RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 KRBA1A5PL33 1030 aa2.91□□□□□ -1.94
RNU6-540P-201ENST00000384622 MAP3K9P80192 1104 aa2.91□□□□□ -1.94
RNU6-540P-201ENST00000384622 SPOCK2Q92563 424 aa2.91□□□□□ -1.94
RNU6-540P-201ENST00000384622 TATDN2Q93075 761 aa2.91□□□□□ -1.94
RNU6-540P-201ENST00000384622 PNMA3Q9UL41 463 aa2.91□□□□□ -1.94
RNU6-540P-201ENST00000384622 FOXD4L6Q3SYB3 417 aaPredicted RBP2.9□□□□□ -1.95
RNU6-540P-201ENST00000384622 RNFT1Q5M7Z0 435 aa2.9□□□□□ -1.95
RNU6-540P-201ENST00000384622 FOXD4L3Q6VB84 417 aaPredicted RBP2.9□□□□□ -1.95
RNU6-540P-201ENST00000384622 FMNL2Q96PY5 1086 aa2.9□□□□□ -1.95
RNU6-540P-201ENST00000384622 FBXO3Q9UK99 471 aa2.9□□□□□ -1.95
RNU6-540P-201ENST00000384622 FCF1Q9Y324 198 aaKnown RBP2.9□□□□□ -1.95
RNU6-540P-201ENST00000384622 NBPF26B4DH59 902 aa2.89□□□□□ -1.95
RNU6-540P-201ENST00000384622 LYPD4Q6UWN0 246 aa2.89□□□□□ -1.95
RNU6-540P-201ENST00000384622 RBM33Q96EV2 1170 aaKnown RBP2.89□□□□□ -1.95
RNU6-540P-201ENST00000384622 REPIN1Q9BWE0 567 aaKnown RBP2.89□□□□□ -1.95
RNU6-540P-201ENST00000384622 MAN1A2O60476 641 aa2.88□□□□□ -1.95
RNU6-540P-201ENST00000384622 SCARF1Q14162 830 aa2.88□□□□□ -1.95
RNU6-540P-201ENST00000384622 SWT1Q5T5J6 900 aaKnown RBP2.88□□□□□ -1.95
RNU6-540P-201ENST00000384622 LCE5AQ5TCM9 118 aa2.88□□□□□ -1.95
RNU6-540P-201ENST00000384622 RNF25Q96BH1 459 aaPredicted RBP2.88□□□□□ -1.95
RNU6-540P-201ENST00000384622 EPAS1Q99814 870 aa2.88□□□□□ -1.95
RNU6-540P-201ENST00000384622 ALDH1A1P00352 501 aa2.87□□□□□ -1.95
RNU6-540P-201ENST00000384622 LCE4AQ5TA78 99 aa2.87□□□□□ -1.95
RNU6-540P-201ENST00000384622 CDCA7LQ96GN5 454 aa2.87□□□□□ -1.95
RNU6-540P-201ENST00000384622 PURBQ96QR8 312 aaKnown RBP2.87□□□□□ -1.95
RNU6-540P-201ENST00000384622 C3orf80F5H4A9 247 aa2.86□□□□□ -1.95
RNU6-540P-201ENST00000384622 NR1I2O75469 434 aa2.86□□□□□ -1.95
RNU6-540P-201ENST00000384622 PPP1R15BQ5SWA1 713 aa2.86□□□□□ -1.95
RNU6-540P-201ENST00000384622 CELA2BP08218 269 aaPredicted RBP2.85□□□□□ -1.95
RNU6-540P-201ENST00000384622 VASPP50552 380 aaPredicted RBP2.85□□□□□ -1.95
RNU6-540P-201ENST00000384622 MRPL14Q6P1L8 145 aaKnown RBP2.85□□□□□ -1.95
RNU6-540P-201ENST00000384622 NUDT18Q6ZVK8 323 aa2.85□□□□□ -1.95
RNU6-540P-201ENST00000384622 SPSB2Q99619 263 aa2.85□□□□□ -1.95
RNU6-540P-201ENST00000384622 ADAMTS2O95450 1211 aa2.84□□□□□ -1.95
RNU6-540P-201ENST00000384622 PRSS12P56730 875 aa2.84□□□□□ -1.95
RNU6-540P-201ENST00000384622 DOC2BQ14184 412 aa2.84□□□□□ -1.95
RNU6-540P-201ENST00000384622 NEDD1Q8NHV4 660 aa2.84□□□□□ -1.95
RNU6-540P-201ENST00000384622 FAM198AQ9UFP1 575 aa2.84□□□□□ -1.95
RNU6-540P-201ENST00000384622 TAOK2Q9UL54 1235 aa2.84□□□□□ -1.95
RNU6-540P-201ENST00000384622 COL17A1Q9UMD9 1497 aaPredicted RBP2.84□□□□□ -1.96
RNU6-540P-201ENST00000384622 ACTN4O43707 911 aaKnown RBP2.83□□□□□ -1.96
RNU6-540P-201ENST00000384622 JAG1P78504 1218 aa2.83□□□□□ -1.96
RNU6-540P-201ENST00000384622 KRTAP1-1Q07627 177 aa2.83□□□□□ -1.96
RNU6-540P-201ENST00000384622 ALYREFQ86V81 257 aaKnown RBP2.83□□□□□ -1.96
RNU6-540P-201ENST00000384622 WASF2Q9Y6W5 498 aa2.83□□□□□ -1.96
RNU6-540P-201ENST00000384622 TRIM32Q13049 653 aa2.82□□□□□ -1.96
RNU6-540P-201ENST00000384622 KMT5BQ4FZB7 885 aa2.82□□□□□ -1.96
RNU6-540P-201ENST00000384622 SCUBE3Q8IX30 993 aa2.82□□□□□ -1.96
RNU6-540P-201ENST00000384622 STK25O00506 426 aa2.81□□□□□ -1.96
RNU6-540P-201ENST00000384622 NANOS1Q8WY41 292 aaKnown RBP2.81□□□□□ -1.96
RNU6-540P-201ENST00000384622 C1QTNF9BB2RNN3 333 aa2.8□□□□□ -1.96
RNU6-540P-201ENST00000384622 HYAL3O43820 417 aaPredicted RBP2.8□□□□□ -1.96
RNU6-540P-201ENST00000384622 SRSF11Q05519 484 aaKnown RBP2.8□□□□□ -1.96
RNU6-540P-201ENST00000384622 LRP8Q14114 963 aa2.8□□□□□ -1.96
RNU6-540P-201ENST00000384622 TSR1Q2NL82 804 aaKnown RBP2.8□□□□□ -1.96
RNU6-540P-201ENST00000384622 RC3H1Q5TC82 1133 aaKnown RBP2.8□□□□□ -1.96
RNU6-540P-201ENST00000384622 CSRNP3Q8WYN3 585 aa2.8□□□□□ -1.96
RNU6-540P-201ENST00000384622 MAP3K7O43318 606 aa2.79□□□□□ -1.96
RNU6-540P-201ENST00000384622 RNF114Q9Y508 228 aa2.79□□□□□ -1.96
RNU6-540P-201ENST00000384622 CD163Q86VB7 1156 aa2.77□□□□□ -1.97
RNU6-540P-201ENST00000384622 CDC14CA4D256 554 aa2.76□□□□□ -1.97
RNU6-540P-201ENST00000384622 COL8A1P27658 744 aa2.76□□□□□ -1.97
RNU6-540P-201ENST00000384622 SV2AQ7L0J3 742 aa2.76□□□□□ -1.97
RNU6-540P-201ENST00000384622 SH3RF1Q7Z6J0 888 aa2.76□□□□□ -1.97
RNU6-540P-201ENST00000384622 VWA5B2Q8N398 1253 aa2.76□□□□□ -1.97
RNU6-540P-201ENST00000384622 CERKQ8TCT0 537 aa2.76□□□□□ -1.97
RNU6-540P-201ENST00000384622 EN1Q05925 392 aaPredicted RBP2.75□□□□□ -1.97
RNU6-540P-201ENST00000384622 C6orf118Q5T5N4 469 aa2.75□□□□□ -1.97
RNU6-540P-201ENST00000384622 CRISPLD2Q9H0B8 497 aa2.75□□□□□ -1.97
RNU6-540P-201ENST00000384622 CFHP08603 1231 aa2.74□□□□□ -1.97
RNU6-540P-201ENST00000384622 BCRP11274 1271 aa2.74□□□□□ -1.97
RNU6-540P-201ENST00000384622 GRIN2CQ14957 1233 aa2.74□□□□□ -1.97
RNU6-540P-201ENST00000384622 RSPO4Q2I0M5 234 aaPredicted RBP2.74□□□□□ -1.97
RNU6-540P-201ENST00000384622 CHRNA4P43681 627 aa2.73□□□□□ -1.97
RNU6-540P-201ENST00000384622 SNRPNP63162 240 aaKnown RBP2.73□□□□□ -1.97
RNU6-540P-201ENST00000384622 SKOR1P84550 965 aa2.73□□□□□ -1.97
RNU6-540P-201ENST00000384622 PTSQ03393 145 aa2.73□□□□□ -1.97
RNU6-540P-201ENST00000384622 PRSS36Q5K4E3 855 aa2.73□□□□□ -1.97
RNU6-540P-201ENST00000384622 IFNLR1Q8IU57 520 aaPredicted RBP2.73□□□□□ -1.97
RNU6-540P-201ENST00000384622 DDX12PQ92771 950 aa2.73□□□□□ -1.97
RNU6-540P-201ENST00000384622 DNMT3LQ9UJW3 386 aa2.73□□□□□ -1.97
RNU6-540P-201ENST00000384622 MKL2Q9ULH7 1088 aa2.73□□□□□ -1.97
RNU6-540P-201ENST00000384622 SIAH2O43255 324 aa2.72□□□□□ -1.97
RNU6-540P-201ENST00000384622 PDE4AP27815 886 aa2.72□□□□□ -1.97
RNU6-540P-201ENST00000384622 WNT7BP56706 349 aa2.72□□□□□ -1.97
RNU6-540P-201ENST00000384622 NBR1Q14596 966 aa2.72□□□□□ -1.97
RNU6-540P-201ENST00000384622 PUS10Q3MIT2 529 aaKnown RBP2.72□□□□□ -1.97
RNU6-540P-201ENST00000384622 FAM160A2Q8N612 972 aaPredicted RBP2.72□□□□□ -1.97
RNU6-540P-201ENST00000384622 CCDC155Q8N6L0 562 aa2.72□□□□□ -1.97
RNU6-540P-201ENST00000384622 EMILIN3Q9NT22 766 aa2.72□□□□□ -1.97
RNU6-540P-201ENST00000384622 BMP2P12643 396 aa2.71□□□□□ -1.98
RNU6-540P-201ENST00000384622 GATA4P43694 442 aa2.71□□□□□ -1.98
RNU6-540P-201ENST00000384622 IRAK1P51617 712 aa2.71□□□□□ -1.98
RNU6-540P-201ENST00000384622 ZNF800Q2TB10 664 aaPredicted RBP eCLIP2.71□□□□□ -1.98
RNU6-540P-201ENST00000384622 NKAPLQ5M9Q1 402 aa2.71□□□□□ -1.98
RNU6-540P-201ENST00000384622 PRDM9Q9NQV7 894 aa2.71□□□□□ -1.98
RNU6-540P-201ENST00000384622 PSPNO60542 156 aa2.7□□□□□ -1.98
RNU6-540P-201ENST00000384622 UPP2O95045 317 aa2.7□□□□□ -1.98
RNU6-540P-201ENST00000384622 TAL1P17542 331 aaPredicted RBP2.7□□□□□ -1.98
RNU6-540P-201ENST00000384622 ITGA6P23229 1130 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms