RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 WDR43Q15061 677 aaKnown RBP eCLIP17.87■□□□□ 0.45
SDC1-202ENST00000381150 FAM43AQ8N2R8 423 aa17.87■□□□□ 0.45
SDC1-202ENST00000381150 ADAMTS8Q9UP79 889 aa17.86■□□□□ 0.45
SDC1-202ENST00000381150 PIK3C2BO00750 1634 aa17.86■□□□□ 0.45
SDC1-202ENST00000381150 ADGRB1O14514 1584 aa17.86■□□□□ 0.45
SDC1-202ENST00000381150 CENPQQ7L2Z9 268 aaPredicted RBP17.86■□□□□ 0.45
SDC1-202ENST00000381150 SLC24A1O60721 1099 aa17.85■□□□□ 0.45
SDC1-202ENST00000381150 CCDC146Q8IYE0 955 aa17.85■□□□□ 0.45
SDC1-202ENST00000381150 C8orf34Q49A92 452 aa17.85■□□□□ 0.45
SDC1-202ENST00000381150 PKNOX2Q96KN3 472 aa17.85■□□□□ 0.45
SDC1-202ENST00000381150 C14orf93Q9H972 538 aaKnown RBP17.85■□□□□ 0.45
SDC1-202ENST00000381150 RRAGDQ9NQL2 400 aaPredicted RBP17.84■□□□□ 0.45
SDC1-202ENST00000381150 GLIPR1L2Q4G1C9 344 aa17.83■□□□□ 0.45
SDC1-202ENST00000381150 CARD14Q9BXL6 1004 aa17.83■□□□□ 0.45
SDC1-202ENST00000381150 ZC3H13Q5T200 1668 aaKnown RBP17.83■□□□□ 0.44
SDC1-202ENST00000381150 RPGRIP1LQ68CZ1 1315 aa17.82■□□□□ 0.44
SDC1-202ENST00000381150 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.82■□□□□ 0.44
SDC1-202ENST00000381150 ARHGAP31Q2M1Z3 1444 aa17.81■□□□□ 0.44
SDC1-202ENST00000381150 CHGAP10645 457 aaKnown RBP17.8■□□□□ 0.44
SDC1-202ENST00000381150 PNNQ9H307 717 aaKnown RBP17.8■□□□□ 0.44
SDC1-202ENST00000381150 BECN1Q14457 450 aa17.79■□□□□ 0.44
SDC1-202ENST00000381150 GLI2P10070 1586 aa17.79■□□□□ 0.44
SDC1-202ENST00000381150 NEUROD2Q15784 382 aa17.78■□□□□ 0.44
SDC1-202ENST00000381150 CENPJQ9HC77 1338 aaPredicted RBP17.78■□□□□ 0.44
SDC1-202ENST00000381150 YEATS2Q9ULM3 1422 aa17.78■□□□□ 0.44
SDC1-202ENST00000381150 SEC24BO95487 1268 aa17.78■□□□□ 0.44
SDC1-202ENST00000381150 NEXMIFQ5QGS0 1516 aa17.78■□□□□ 0.44
SDC1-202ENST00000381150 QRICH2Q9H0J4 1663 aa17.78■□□□□ 0.44
SDC1-202ENST00000381150 ZNF521Q96K83 1311 aa17.78■□□□□ 0.44
SDC1-202ENST00000381150 PLEKHH1Q9ULM0 1364 aa17.77■□□□□ 0.44
SDC1-202ENST00000381150 BCAR3O75815 825 aa17.77■□□□□ 0.43
SDC1-202ENST00000381150 TRAK1Q9UPV9 953 aa17.76■□□□□ 0.43
SDC1-202ENST00000381150 TMEM132EQ6IEE7 984 aa17.76■□□□□ 0.43
SDC1-202ENST00000381150 PANK2Q9BZ23 570 aa17.75■□□□□ 0.43
SDC1-202ENST00000381150 GOLGA2Q08379 1002 aa17.74■□□□□ 0.43
SDC1-202ENST00000381150 HSP90AA2PQ14568 343 aaPredicted RBP17.74■□□□□ 0.43
SDC1-202ENST00000381150 UPF2Q9HAU5 1272 aaKnown RBP17.74■□□□□ 0.43
SDC1-202ENST00000381150 L1TD1Q5T7N2 865 aaKnown RBP17.73■□□□□ 0.43
SDC1-202ENST00000381150 IDI1Q13907 227 aa17.73■□□□□ 0.43
SDC1-202ENST00000381150 COG6Q9Y2V7 657 aa17.73■□□□□ 0.43
SDC1-202ENST00000381150 GOLGA6L3A6NEY3 463 aa17.73■□□□□ 0.43
SDC1-202ENST00000381150 HSP90AA1P07900 732 aaKnown RBP17.73■□□□□ 0.43
SDC1-202ENST00000381150 ARHGEF28Q8N1W1 1705 aaKnown RBP17.72■□□□□ 0.43
SDC1-202ENST00000381150 CYB5RLQ6IPT4 315 aa17.71■□□□□ 0.43
SDC1-202ENST00000381150 KDM2BQ8NHM5 1336 aa17.71■□□□□ 0.43
SDC1-202ENST00000381150 ZFYVE9O95405 1425 aa17.71■□□□□ 0.43
SDC1-202ENST00000381150 MYO5BQ9ULV0 1848 aa17.71■□□□□ 0.43
SDC1-202ENST00000381150 IGHDP01880 384 aa17.71■□□□□ 0.42
SDC1-202ENST00000381150 DUSP27Q5VZP5 1158 aa17.71■□□□□ 0.42
SDC1-202ENST00000381150 ZMYND15Q9H091 742 aa17.71■□□□□ 0.42
SDC1-202ENST00000381150 VGFO15240 615 aaPredicted RBP17.7■□□□□ 0.42
SDC1-202ENST00000381150 PANK1Q8TE04 598 aa17.7■□□□□ 0.42
SDC1-202ENST00000381150 SLC12A5Q9H2X9 1139 aa17.7■□□□□ 0.42
SDC1-202ENST00000381150 PREX1Q8TCU6 1659 aa17.7■□□□□ 0.42
SDC1-202ENST00000381150 APAF1O14727 1248 aa17.69■□□□□ 0.42
SDC1-202ENST00000381150 NUTM2DQ5VT03 806 aaPredicted RBP17.69■□□□□ 0.42
SDC1-202ENST00000381150 CLUAP1Q96AJ1 413 aa17.69■□□□□ 0.42
SDC1-202ENST00000381150 BCL2L13Q9BXK5 485 aa17.69■□□□□ 0.42
SDC1-202ENST00000381150 TMEM131LA2VDJ0 1609 aa17.69■□□□□ 0.42
SDC1-202ENST00000381150 TRMT2AQ8IZ69 625 aaKnown RBP17.68■□□□□ 0.42
SDC1-202ENST00000381150 SLC52A1Q9NWF4 448 aa17.68■□□□□ 0.42
SDC1-202ENST00000381150 PUS7Q96PZ0 661 aaKnown RBP17.67■□□□□ 0.42
SDC1-202ENST00000381150 TULP4Q9NRJ4 1543 aa17.67■□□□□ 0.42
SDC1-202ENST00000381150 USP32Q8NFA0 1604 aa17.67■□□□□ 0.42
SDC1-202ENST00000381150 RIMBP3CA6NJZ7 1639 aa17.67■□□□□ 0.42
SDC1-202ENST00000381150 RIMBP3BA6NNM3 1639 aa17.67■□□□□ 0.42
SDC1-202ENST00000381150 RIMBP3Q9UFD9 1639 aa17.67■□□□□ 0.42
SDC1-202ENST00000381150 NSD3Q9BZ95 1437 aa17.67■□□□□ 0.42
SDC1-202ENST00000381150 POLR3AO14802 1390 aaPredicted RBP17.67■□□□□ 0.42
SDC1-202ENST00000381150 DIP2BQ9P265 1576 aa17.66■□□□□ 0.42
SDC1-202ENST00000381150 XRCC6P12956 609 aaKnown RBP eCLIP17.66■□□□□ 0.42
SDC1-202ENST00000381150 SENP3Q9H4L4 574 aaPredicted RBP17.66■□□□□ 0.42
SDC1-202ENST00000381150 ARID3AQ99856 593 aa17.65■□□□□ 0.42
SDC1-202ENST00000381150 SHPRHQ149N8 1683 aa17.65■□□□□ 0.42
SDC1-202ENST00000381150 SLFN5Q08AF3 891 aa17.65■□□□□ 0.42
SDC1-202ENST00000381150 TNNT2P45379 298 aaPredicted RBP17.64■□□□□ 0.42
SDC1-202ENST00000381150 SPINK5Q9NQ38 1064 aaPredicted RBP17.64■□□□□ 0.41
SDC1-202ENST00000381150 TRIM44Q96DX7 344 aaPredicted RBP17.63■□□□□ 0.41
SDC1-202ENST00000381150 MFAP1P55081 439 aaKnown RBP17.62■□□□□ 0.41
SDC1-202ENST00000381150 FAM69CQ0P6D2 419 aa17.62■□□□□ 0.41
SDC1-202ENST00000381150 RRP7AQ9Y3A4 280 aaKnown RBP17.61■□□□□ 0.41
SDC1-202ENST00000381150 REREQ9P2R6 1566 aa17.61■□□□□ 0.41
SDC1-202ENST00000381150 FBXO31Q5XUX0 539 aaPredicted RBP17.6■□□□□ 0.41
SDC1-202ENST00000381150 FOXD4L1Q9NU39 408 aa17.6■□□□□ 0.41
SDC1-202ENST00000381150 EVC2Q86UK5 1308 aa17.6■□□□□ 0.41
SDC1-202ENST00000381150 MYH16Q9H6N6 1097 aa17.59■□□□□ 0.41
SDC1-202ENST00000381150 PTPRMP28827 1452 aa17.59■□□□□ 0.41
SDC1-202ENST00000381150 TBC1D2Q9BYX2 928 aa17.59■□□□□ 0.41
SDC1-202ENST00000381150 TSPOAP1O95153 1857 aa17.59■□□□□ 0.41
SDC1-202ENST00000381150 MORC1Q86VD1 984 aa17.59■□□□□ 0.41
SDC1-202ENST00000381150 ANKRD36BQ8N2N9 1353 aa17.58■□□□□ 0.41
SDC1-202ENST00000381150 AGLP35573 1532 aa17.58■□□□□ 0.41
SDC1-202ENST00000381150 DMRT2Q9Y5R5 561 aa17.58■□□□□ 0.41
SDC1-202ENST00000381150 NGEFQ8N5V2 710 aa17.57■□□□□ 0.4
SDC1-202ENST00000381150 TRAK2O60296 914 aa17.57■□□□□ 0.4
SDC1-202ENST00000381150 CABP2Q9NPB3 220 aa17.56■□□□□ 0.4
SDC1-202ENST00000381150 USP19O94966 1318 aa17.55■□□□□ 0.4
SDC1-202ENST00000381150 CGNL1Q0VF96 1302 aa17.55■□□□□ 0.4
SDC1-202ENST00000381150 MCM4P33991 863 aa17.55■□□□□ 0.4
SDC1-202ENST00000381150 NKTRP30414 1462 aaKnown RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms