RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 BCL2L13Q9BXK5 485 aa11.54□□□□□ -0.56
SNX1-202ENST00000380285 RRBP1Q9P2E9 1410 aaKnown RBP11.54□□□□□ -0.56
SNX1-202ENST00000380285 R3HCC1Q9Y3T6 440 aaKnown RBP11.54□□□□□ -0.56
SNX1-202ENST00000380285 RRP12Q5JTH9 1297 aaKnown RBP11.54□□□□□ -0.56
SNX1-202ENST00000380285 RIPK4P57078 832 aa11.54□□□□□ -0.56
SNX1-202ENST00000380285 GCC1Q96CN9 775 aa11.54□□□□□ -0.56
SNX1-202ENST00000380285 TRAK1Q9UPV9 953 aa11.53□□□□□ -0.56
SNX1-202ENST00000380285 PRDM2Q13029 1718 aa11.53□□□□□ -0.56
SNX1-202ENST00000380285 TEFQ10587 303 aa11.53□□□□□ -0.56
SNX1-202ENST00000380285 G3BP1Q13283 466 aaKnown RBP eCLIP11.53□□□□□ -0.56
SNX1-202ENST00000380285 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.53□□□□□ -0.56
SNX1-202ENST00000380285 PCMTD1Q96MG8 357 aaPredicted RBP11.53□□□□□ -0.56
SNX1-202ENST00000380285 CASKIN1Q8WXD9 1431 aa11.52□□□□□ -0.56
SNX1-202ENST00000380285 VPS37CA5D8V6 355 aaPredicted RBP11.52□□□□□ -0.56
SNX1-202ENST00000380285 PIP4K2AP48426 406 aaPredicted RBP11.52□□□□□ -0.57
SNX1-202ENST00000380285 ERICH2A1L162 156 aa11.52□□□□□ -0.57
SNX1-202ENST00000380285 EFCAB5A4FU69 1503 aa11.52□□□□□ -0.57
SNX1-202ENST00000380285 ATAD2BQ9ULI0 1458 aa11.51□□□□□ -0.57
SNX1-202ENST00000380285 CNTROBQ8N137 903 aa11.51□□□□□ -0.57
SNX1-202ENST00000380285 CCDC191Q8NCU4 936 aa11.51□□□□□ -0.57
SNX1-202ENST00000380285 ZNF330Q9Y3S2 320 aaPredicted RBP11.51□□□□□ -0.57
SNX1-202ENST00000380285 PLEKHH2Q8IVE3 1493 aa11.51□□□□□ -0.57
SNX1-202ENST00000380285 FRAT2O75474 233 aaPredicted RBP11.51□□□□□ -0.57
SNX1-202ENST00000380285 XBP1P17861 261 aa11.51□□□□□ -0.57
SNX1-202ENST00000380285 LEKR1Q6ZMV7 388 aa11.51□□□□□ -0.57
SNX1-202ENST00000380285 PDCL2Q8N4E4 241 aa11.51□□□□□ -0.57
SNX1-202ENST00000380285 RDXP35241 583 aaKnown RBP11.51□□□□□ -0.57
SNX1-202ENST00000380285 NOL10Q9BSC4 688 aaKnown RBP11.51□□□□□ -0.57
SNX1-202ENST00000380285 BACH2Q9BYV9 841 aa11.51□□□□□ -0.57
SNX1-202ENST00000380285 BRMS1Q9HCU9 246 aa11.51□□□□□ -0.57
SNX1-202ENST00000380285 SMARCE1Q969G3 411 aa11.5□□□□□ -0.57
SNX1-202ENST00000380285 MLECQ14165 292 aa11.5□□□□□ -0.57
SNX1-202ENST00000380285 TXLNBQ8N3L3 684 aa11.5□□□□□ -0.57
SNX1-202ENST00000380285 KINO60870 393 aaKnown RBP11.5□□□□□ -0.57
SNX1-202ENST00000380285 FOXD4L6Q3SYB3 417 aaPredicted RBP11.5□□□□□ -0.57
SNX1-202ENST00000380285 FOXD4L3Q6VB84 417 aaPredicted RBP11.5□□□□□ -0.57
SNX1-202ENST00000380285 AEBP1Q8IUX7 1158 aa11.5□□□□□ -0.57
SNX1-202ENST00000380285 PKNOX2Q96KN3 472 aa11.49□□□□□ -0.57
SNX1-202ENST00000380285 DHX16O60231 1041 aaKnown RBP11.49□□□□□ -0.57
SNX1-202ENST00000380285 ZNF396Q96N95 335 aaPredicted RBP11.49□□□□□ -0.57
SNX1-202ENST00000380285 GNAI3P08754 354 aa11.49□□□□□ -0.57
SNX1-202ENST00000380285 LNPKQ9C0E8 428 aa11.49□□□□□ -0.57
SNX1-202ENST00000380285 HFM1A2PYH4 1435 aa11.49□□□□□ -0.57
SNX1-202ENST00000380285 TRIM5Q9C035 493 aa11.49□□□□□ -0.57
SNX1-202ENST00000380285 ANKRD1Q15327 319 aa11.48□□□□□ -0.57
SNX1-202ENST00000380285 CCDC192P0DO97 292 aa11.48□□□□□ -0.57
SNX1-202ENST00000380285 TTC5Q8N0Z6 440 aa11.48□□□□□ -0.57
SNX1-202ENST00000380285 EHBP1L1Q8N3D4 1523 aa11.48□□□□□ -0.57
SNX1-202ENST00000380285 RALYLQ86SE5 291 aaKnown RBP11.48□□□□□ -0.57
SNX1-202ENST00000380285 ANO8Q9HCE9 1232 aaPredicted RBP11.48□□□□□ -0.57
SNX1-202ENST00000380285 SDF4Q9BRK5 362 aa11.48□□□□□ -0.57
SNX1-202ENST00000380285 SUPT6HQ7KZ85 1726 aaKnown RBP11.47□□□□□ -0.57
SNX1-202ENST00000380285 FILIP1LQ4L180 1135 aa11.47□□□□□ -0.57
SNX1-202ENST00000380285 G3V3G9 751 aa11.47□□□□□ -0.57
SNX1-202ENST00000380285 H0YHG0 523 aa11.47□□□□□ -0.57
SNX1-202ENST00000380285 DCAF8Q5TAQ9 597 aa11.47□□□□□ -0.57
SNX1-202ENST00000380285 WDR33Q9C0J8 1336 aaKnown RBP11.47□□□□□ -0.57
SNX1-202ENST00000380285 FKBP5Q13451 457 aaPredicted RBP11.47□□□□□ -0.57
SNX1-202ENST00000380285 RUSC2Q8N2Y8 1516 aa11.47□□□□□ -0.57
SNX1-202ENST00000380285 USP8P40818 1118 aa11.47□□□□□ -0.57
SNX1-202ENST00000380285 ERC1Q8IUD2 1116 aa11.47□□□□□ -0.57
SNX1-202ENST00000380285 JMYQ8N9B5 988 aa11.47□□□□□ -0.57
SNX1-202ENST00000380285 GRPEL1Q9HAV7 217 aa11.47□□□□□ -0.57
SNX1-202ENST00000380285 VPS53Q5VIR6 699 aa11.46□□□□□ -0.57
SNX1-202ENST00000380285 EIF3JO75822 258 aaKnown RBP11.46□□□□□ -0.57
SNX1-202ENST00000380285 ZNF428Q96B54 188 aa11.46□□□□□ -0.57
SNX1-202ENST00000380285 ANKRD50Q9ULJ7 1429 aa11.46□□□□□ -0.57
SNX1-202ENST00000380285 JPH4Q96JJ6 628 aa11.46□□□□□ -0.57
SNX1-202ENST00000380285 ELL2O00472 640 aaPredicted RBP11.46□□□□□ -0.58
SNX1-202ENST00000380285 NFXL1Q6ZNB6 911 aa11.46□□□□□ -0.58
SNX1-202ENST00000380285 FANCD2Q9BXW9 1451 aa11.46□□□□□ -0.58
SNX1-202ENST00000380285 KIF2AO00139 706 aaPredicted RBP11.46□□□□□ -0.58
SNX1-202ENST00000380285 NCOA2Q15596 1464 aa11.46□□□□□ -0.58
SNX1-202ENST00000380285 DACH1Q9UI36 760 aa11.46□□□□□ -0.58
SNX1-202ENST00000380285 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.45□□□□□ -0.58
SNX1-202ENST00000380285 ERLIN1O75477 346 aa11.45□□□□□ -0.58
SNX1-202ENST00000380285 GTF2E1P29083 439 aaPredicted RBP11.45□□□□□ -0.58
SNX1-202ENST00000380285 LUC7LQ9NQ29 371 aaKnown RBP11.45□□□□□ -0.58
SNX1-202ENST00000380285 IL27Q8NEV9 243 aa11.45□□□□□ -0.58
SNX1-202ENST00000380285 K7ELQ4 463 aaPredicted RBP11.45□□□□□ -0.58
SNX1-202ENST00000380285 CAGE1Q8TC20 777 aa11.45□□□□□ -0.58
SNX1-202ENST00000380285 SRCIN1Q9C0H9 1055 aa11.45□□□□□ -0.58
SNX1-202ENST00000380285 WDR63Q8IWG1 891 aa11.45□□□□□ -0.58
SNX1-202ENST00000380285 UBTFL1P0CB47 393 aaPredicted RBP11.44□□□□□ -0.58
SNX1-202ENST00000380285 PANK1Q8TE04 598 aa11.44□□□□□ -0.58
SNX1-202ENST00000380285 TCEAL9Q9UHQ7 104 aa11.44□□□□□ -0.58
SNX1-202ENST00000380285 TSPYL1Q9H0U9 437 aa11.44□□□□□ -0.58
SNX1-202ENST00000380285 APPP05067 770 aa11.44□□□□□ -0.58
SNX1-202ENST00000380285 IQCEQ6IPM2 695 aa11.44□□□□□ -0.58
SNX1-202ENST00000380285 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.44□□□□□ -0.58
SNX1-202ENST00000380285 CCDC112Q8NEF3 446 aa11.44□□□□□ -0.58
SNX1-202ENST00000380285 GAPVD1Q14C86 1478 aa11.44□□□□□ -0.58
SNX1-202ENST00000380285 CBFA2T2O43439 604 aa11.44□□□□□ -0.58
SNX1-202ENST00000380285 SART3Q15020 963 aaKnown RBP11.43□□□□□ -0.58
SNX1-202ENST00000380285 CLASRPQ8N2M8 674 aaKnown RBP11.43□□□□□ -0.58
SNX1-202ENST00000380285 ESPNB1AK53 854 aa11.43□□□□□ -0.58
SNX1-202ENST00000380285 PTPRGP23470 1445 aa11.43□□□□□ -0.58
SNX1-202ENST00000380285 TSPYL4Q9UJ04 414 aa11.43□□□□□ -0.58
SNX1-202ENST00000380285 NAP1L1P55209 391 aaKnown RBP11.42□□□□□ -0.58
SNX1-202ENST00000380285 ERLIN2O94905 339 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms