RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 PDCP20941 246 aa13.92□□□□□ -0.18
VPS13A-205ENST00000376636 CCDC91Q7Z6B0 441 aa13.92□□□□□ -0.18
VPS13A-205ENST00000376636 LRRCC1Q9C099 1032 aa13.92□□□□□ -0.18
VPS13A-205ENST00000376636 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.92□□□□□ -0.18
VPS13A-205ENST00000376636 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.92□□□□□ -0.18
VPS13A-205ENST00000376636 NF2P35240 595 aa13.92□□□□□ -0.18
VPS13A-205ENST00000376636 KIF3BO15066 747 aa13.92□□□□□ -0.18
VPS13A-205ENST00000376636 SPATA24Q86W54 205 aa13.91□□□□□ -0.18
VPS13A-205ENST00000376636 CDK5RAP3Q96JB5 506 aa13.91□□□□□ -0.18
VPS13A-205ENST00000376636 WRNQ14191 1432 aaPredicted RBP eCLIP13.91□□□□□ -0.18
VPS13A-205ENST00000376636 BAZ1BQ9UIG0 1483 aaKnown RBP13.91□□□□□ -0.18
VPS13A-205ENST00000376636 DDX11Q96FC9 970 aa13.91□□□□□ -0.18
VPS13A-205ENST00000376636 STAMBPO95630 424 aa13.9□□□□□ -0.18
VPS13A-205ENST00000376636 AAMPQ13685 434 aa13.9□□□□□ -0.18
VPS13A-205ENST00000376636 MYBBP1AQ9BQG0 1328 aaKnown RBP13.9□□□□□ -0.18
VPS13A-205ENST00000376636 SART3Q15020 963 aaKnown RBP13.9□□□□□ -0.18
VPS13A-205ENST00000376636 TTC5Q8N0Z6 440 aa13.9□□□□□ -0.18
VPS13A-205ENST00000376636 UACAQ9BZF9 1416 aa13.89□□□□□ -0.19
VPS13A-205ENST00000376636 CCDC146Q8IYE0 955 aa13.89□□□□□ -0.19
VPS13A-205ENST00000376636 STIM1Q13586 685 aa13.89□□□□□ -0.19
VPS13A-205ENST00000376636 HSP90AB4PQ58FF6 505 aa13.89□□□□□ -0.19
VPS13A-205ENST00000376636 DDX58O95786 925 aaKnown RBP13.89□□□□□ -0.19
VPS13A-205ENST00000376636 CENPHQ9H3R5 247 aa13.89□□□□□ -0.19
VPS13A-205ENST00000376636 SEPT11Q9NVA2 429 aaKnown RBP13.89□□□□□ -0.19
VPS13A-205ENST00000376636 TAX1BP1Q86VP1 789 aa13.89□□□□□ -0.19
VPS13A-205ENST00000376636 RBM33Q96EV2 1170 aaKnown RBP13.88□□□□□ -0.19
VPS13A-205ENST00000376636 DACH1Q9UI36 760 aa13.88□□□□□ -0.19
VPS13A-205ENST00000376636 TSPY26PQ9H489 355 aa13.88□□□□□ -0.19
VPS13A-205ENST00000376636 ZBED9Q6R2W3 1325 aa13.88□□□□□ -0.19
VPS13A-205ENST00000376636 TMEM132AQ24JP5 1023 aa13.88□□□□□ -0.19
VPS13A-205ENST00000376636 ERCC6Q03468 1493 aa13.87□□□□□ -0.19
VPS13A-205ENST00000376636 RRP1P56182 461 aaKnown RBP13.87□□□□□ -0.19
VPS13A-205ENST00000376636 NGDNQ8NEJ9 315 aaKnown RBP13.87□□□□□ -0.19
VPS13A-205ENST00000376636 JMYQ8N9B5 988 aa13.87□□□□□ -0.19
VPS13A-205ENST00000376636 CCDC112Q8NEF3 446 aa13.87□□□□□ -0.19
VPS13A-205ENST00000376636 RRP9O43818 475 aaKnown RBP13.87□□□□□ -0.19
VPS13A-205ENST00000376636 G3BP1Q13283 466 aaKnown RBP eCLIP13.86□□□□□ -0.19
VPS13A-205ENST00000376636 NGEFQ8N5V2 710 aa13.86□□□□□ -0.19
VPS13A-205ENST00000376636 TRIM21P19474 475 aaKnown RBP13.86□□□□□ -0.19
VPS13A-205ENST00000376636 CEP63Q96MT8 703 aa13.86□□□□□ -0.19
VPS13A-205ENST00000376636 RB1CC1Q8TDY2 1594 aa13.86□□□□□ -0.19
VPS13A-205ENST00000376636 MCM2P49736 904 aa13.86□□□□□ -0.19
VPS13A-205ENST00000376636 ZNF396Q96N95 335 aaPredicted RBP13.86□□□□□ -0.19
VPS13A-205ENST00000376636 PPFIBP1Q86W92 1011 aa13.85□□□□□ -0.19
VPS13A-205ENST00000376636 FAM107BQ9H098 131 aa13.85□□□□□ -0.19
VPS13A-205ENST00000376636 GOLGA6L10A0A0M3HER8 536 aa13.85□□□□□ -0.19
VPS13A-205ENST00000376636 PKD2Q13563 968 aa13.85□□□□□ -0.19
VPS13A-205ENST00000376636 SHTN1A0MZ66 631 aa13.85□□□□□ -0.19
VPS13A-205ENST00000376636 SLC4A3P48751 1232 aa13.85□□□□□ -0.19
VPS13A-205ENST00000376636 CFAP57Q96MR6 1250 aa13.85□□□□□ -0.19
VPS13A-205ENST00000376636 EID1Q9Y6B2 187 aa13.85□□□□□ -0.19
VPS13A-205ENST00000376636 TEFQ10587 303 aa13.84□□□□□ -0.19
VPS13A-205ENST00000376636 CCDC192P0DO97 292 aa13.84□□□□□ -0.19
VPS13A-205ENST00000376636 ANKRD30AQ9BXX3 1397 aa13.84□□□□□ -0.19
VPS13A-205ENST00000376636 TRHP20396 242 aaPredicted RBP13.84□□□□□ -0.19
VPS13A-205ENST00000376636 MCM3P25205 808 aa13.84□□□□□ -0.19
VPS13A-205ENST00000376636 SLC3A2P08195 630 aaKnown RBP13.84□□□□□ -0.19
VPS13A-205ENST00000376636 BCL11BQ9C0K0 894 aaPredicted RBP13.83□□□□□ -0.19
VPS13A-205ENST00000376636 FMN1Q68DA7 1419 aa13.83□□□□□ -0.19
VPS13A-205ENST00000376636 PDCL2Q8N4E4 241 aa13.83□□□□□ -0.2
VPS13A-205ENST00000376636 CBFA2T2O43439 604 aa13.83□□□□□ -0.2
VPS13A-205ENST00000376636 MLECQ14165 292 aa13.83□□□□□ -0.2
VPS13A-205ENST00000376636 C22orf23Q9BZE7 217 aa13.83□□□□□ -0.2
VPS13A-205ENST00000376636 SERPINC1P01008 464 aa13.83□□□□□ -0.2
VPS13A-205ENST00000376636 KRT18P05783 430 aaKnown RBP13.82□□□□□ -0.2
VPS13A-205ENST00000376636 MAP9Q49MG5 647 aa13.82□□□□□ -0.2
VPS13A-205ENST00000376636 MAP2K1Q02750 393 aaPredicted RBP13.82□□□□□ -0.2
VPS13A-205ENST00000376636 WASHC2AQ641Q2 1341 aa13.82□□□□□ -0.2
VPS13A-205ENST00000376636 CCDC97Q96F63 343 aaPredicted RBP13.82□□□□□ -0.2
VPS13A-205ENST00000376636 JAKMIP3Q5VZ66 844 aa13.82□□□□□ -0.2
VPS13A-205ENST00000376636 BRPF1P55201 1214 aaPredicted RBP13.82□□□□□ -0.2
VPS13A-205ENST00000376636 NUP155O75694 1391 aa13.82□□□□□ -0.2
VPS13A-205ENST00000376636 MYO15BQ96JP2 1530 aa13.82□□□□□ -0.2
VPS13A-205ENST00000376636 HIP1O00291 1037 aa13.81□□□□□ -0.2
VPS13A-205ENST00000376636 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.81□□□□□ -0.22e-6■■■□□ 14.9
VPS13A-205ENST00000376636 CNTROBQ8N137 903 aa13.81□□□□□ -0.2
VPS13A-205ENST00000376636 BAZ1AQ9NRL2 1556 aaPredicted RBP13.81□□□□□ -0.2
VPS13A-205ENST00000376636 PDCL3Q9H2J4 239 aa13.8□□□□□ -0.2
VPS13A-205ENST00000376636 TMCO3Q6UWJ1 677 aa13.8□□□□□ -0.2
VPS13A-205ENST00000376636 API5Q9BZZ5 524 aaKnown RBP13.8□□□□□ -0.2
VPS13A-205ENST00000376636 GBP3Q9H0R5 595 aa13.8□□□□□ -0.2
VPS13A-205ENST00000376636 CCDC102AQ96A19 550 aa13.8□□□□□ -0.2
VPS13A-205ENST00000376636 MICALCLQ6ZW33 695 aa13.8□□□□□ -0.2
VPS13A-205ENST00000376636 FOSBP53539 338 aa13.79□□□□□ -0.2
VPS13A-205ENST00000376636 LRRFIP2Q9Y608 721 aaKnown RBP13.79□□□□□ -0.2
VPS13A-205ENST00000376636 NFKBIBQ15653 356 aa13.79□□□□□ -0.2
VPS13A-205ENST00000376636 IKQ13123 557 aaPredicted RBP13.79□□□□□ -0.2
VPS13A-205ENST00000376636 DZIP1LQ8IYY4 767 aaKnown RBP13.79□□□□□ -0.2
VPS13A-205ENST00000376636 CRACR2AQ9BSW2 395 aa13.79□□□□□ -0.2
VPS13A-205ENST00000376636 DNAI2Q9GZS0 605 aa13.79□□□□□ -0.2
VPS13A-205ENST00000376636 COG3Q96JB2 828 aa13.79□□□□□ -0.2
VPS13A-205ENST00000376636 ANKRD18BA2A2Z9 1011 aa13.78□□□□□ -0.2
VPS13A-205ENST00000376636 NEBLO76041 1014 aa13.78□□□□□ -0.2
VPS13A-205ENST00000376636 RNF214Q8ND24 703 aa13.78□□□□□ -0.2
VPS13A-205ENST00000376636 TRAK2O60296 914 aa13.78□□□□□ -0.2
VPS13A-205ENST00000376636 FAM193AP78312 1265 aa13.78□□□□□ -0.2
VPS13A-205ENST00000376636 GGT6Q6P531 493 aa13.78□□□□□ -0.2
VPS13A-205ENST00000376636 CFAP45Q9UL16 551 aa13.78□□□□□ -0.2
VPS13A-205ENST00000376636 CDC45O75419 566 aa13.78□□□□□ -0.2
VPS13A-205ENST00000376636 KIF2AO00139 706 aaPredicted RBP13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms