RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 NME8Q8N427 588 aa11.71□□□□□ -0.54
UBR4-201ENST00000375218 TESPA1A2RU30 521 aaPredicted RBP11.7□□□□□ -0.54
UBR4-201ENST00000375218 GIMAP6Q6P9H5 292 aa11.7□□□□□ -0.54
UBR4-201ENST00000375218 PLXNC1O60486 1568 aa11.7□□□□□ -0.54
UBR4-201ENST00000375218 NKX1-1Q15270 411 aaPredicted RBP11.7□□□□□ -0.54
UBR4-201ENST00000375218 CREBRFQ8IUR6 639 aa11.7□□□□□ -0.54
UBR4-201ENST00000375218 TEX14Q8IWB6 1497 aa11.7□□□□□ -0.54
UBR4-201ENST00000375218 KDM5DQ9BY66 1539 aa11.7□□□□□ -0.54
UBR4-201ENST00000375218 SH3BP5O60239 455 aa11.7□□□□□ -0.54
UBR4-201ENST00000375218 PTPRGP23470 1445 aa11.69□□□□□ -0.54
UBR4-201ENST00000375218 ZFYVE16Q7Z3T8 1539 aa11.69□□□□□ -0.54
UBR4-201ENST00000375218 MTUS2Q5JR59 1369 aa11.68□□□□□ -0.54
UBR4-201ENST00000375218 BCORL1Q5H9F3 1711 aa11.68□□□□□ -0.54
UBR4-201ENST00000375218 E9PCH4 1651 aa11.68□□□□□ -0.54
UBR4-201ENST00000375218 VWDEQ8N2E2 1590 aa11.68□□□□□ -0.54
UBR4-201ENST00000375218 SIN3AQ96ST3 1273 aa11.67□□□□□ -0.54
UBR4-201ENST00000375218 ZFYVE27Q5T4F4 411 aa11.66□□□□□ -0.54
UBR4-201ENST00000375218 TRAPPC8Q9Y2L5 1435 aa11.66□□□□□ -0.54
UBR4-201ENST00000375218 IRX3P78415 501 aaPredicted RBP11.65□□□□□ -0.54
UBR4-201ENST00000375218 SH3BP1Q9Y3L3 701 aa11.65□□□□□ -0.54
UBR4-201ENST00000375218 CCDC181Q5TID7 509 aa11.64□□□□□ -0.55
UBR4-201ENST00000375218 SHANK2Q9UPX8 1470 aa11.64□□□□□ -0.55
UBR4-201ENST00000375218 ABCA6Q8N139 1617 aa11.64□□□□□ -0.55
UBR4-201ENST00000375218 ANP32CO43423 234 aa11.64□□□□□ -0.55
UBR4-201ENST00000375218 MTA3Q9BTC8 594 aa11.64□□□□□ -0.55
UBR4-201ENST00000375218 GABBR1Q9UBS5 961 aa11.64□□□□□ -0.55
UBR4-201ENST00000375218 KDM5CP41229 1560 aa11.63□□□□□ -0.55
UBR4-201ENST00000375218 IQGAP3Q86VI3 1631 aa11.63□□□□□ -0.55
UBR4-201ENST00000375218 MROH2AA6NES4 1674 aa11.63□□□□□ -0.55
UBR4-201ENST00000375218 CIZ1Q9ULV3 898 aaPredicted RBP11.63□□□□□ -0.55
UBR4-201ENST00000375218 CARMIL2Q6F5E8 1435 aa11.63□□□□□ -0.55
UBR4-201ENST00000375218 SPDYE4A6NLX3 237 aa11.63□□□□□ -0.55
UBR4-201ENST00000375218 DHX16O60231 1041 aaKnown RBP11.63□□□□□ -0.55
UBR4-201ENST00000375218 KIAA1522Q9P206 1035 aaPredicted RBP11.63□□□□□ -0.55
UBR4-201ENST00000375218 IFT172Q9UG01 1749 aa11.62□□□□□ -0.55
UBR4-201ENST00000375218 ROCK1Q13464 1354 aa11.62□□□□□ -0.55
UBR4-201ENST00000375218 PPFIA4O75335 1185 aa11.62□□□□□ -0.55
UBR4-201ENST00000375218 TSHZ1Q6ZSZ6 1077 aa11.62□□□□□ -0.55
UBR4-201ENST00000375218 ZNF830Q96NB3 372 aaPredicted RBP11.62□□□□□ -0.55
UBR4-201ENST00000375218 DIP2BQ9P265 1576 aa11.62□□□□□ -0.55
UBR4-201ENST00000375218 ITGAEP38570 1179 aa11.62□□□□□ -0.55
UBR4-201ENST00000375218 KRBA2Q6ZNG9 492 aa11.62□□□□□ -0.55
UBR4-201ENST00000375218 POLR1AO95602 1720 aaPredicted RBP11.62□□□□□ -0.55
UBR4-201ENST00000375218 CASC1Q6TDU7 716 aa11.61□□□□□ -0.55
UBR4-201ENST00000375218 GET4Q7L5D6 327 aaPredicted RBP11.61□□□□□ -0.55
UBR4-201ENST00000375218 SLC4A2P04920 1241 aa11.61□□□□□ -0.55
UBR4-201ENST00000375218 RPS6KL1Q9Y6S9 549 aa11.61□□□□□ -0.55
UBR4-201ENST00000375218 ARAP3Q8WWN8 1544 aa11.61□□□□□ -0.55
UBR4-201ENST00000375218 ATXN8OSP0DMR3 200 aa11.61□□□□□ -0.55
UBR4-201ENST00000375218 MRRFQ96E11 262 aaKnown RBP11.61□□□□□ -0.55
UBR4-201ENST00000375218 DRC1Q96MC2 740 aa11.61□□□□□ -0.55
UBR4-201ENST00000375218 WDR7Q9Y4E6 1490 aa11.6□□□□□ -0.55
UBR4-201ENST00000375218 MYBPC2Q14324 1141 aa11.6□□□□□ -0.55
UBR4-201ENST00000375218 AXDND1Q5T1B0 1012 aaPredicted RBP11.6□□□□□ -0.55
UBR4-201ENST00000375218 SPOCK2Q92563 424 aa11.6□□□□□ -0.55
UBR4-201ENST00000375218 ATF5Q9Y2D1 282 aaPredicted RBP11.6□□□□□ -0.55
UBR4-201ENST00000375218 SEMA3EO15041 775 aa11.6□□□□□ -0.55
UBR4-201ENST00000375218 LONRF3Q496Y0 759 aa11.6□□□□□ -0.55
UBR4-201ENST00000375218 MORC4Q8TE76 937 aa11.6□□□□□ -0.55
UBR4-201ENST00000375218 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.6□□□□□ -0.55
UBR4-201ENST00000375218 ASXL2Q76L83 1435 aa11.6□□□□□ -0.55
UBR4-201ENST00000375218 RRP9O43818 475 aaKnown RBP11.59□□□□□ -0.55
UBR4-201ENST00000375218 PLCH2O75038 1416 aa11.59□□□□□ -0.55
UBR4-201ENST00000375218 COL17A1Q9UMD9 1497 aaPredicted RBP11.59□□□□□ -0.55
UBR4-201ENST00000375218 CREB3O43889 395 aa11.59□□□□□ -0.55
UBR4-201ENST00000375218 TTC36A6NLP5 189 aa11.59□□□□□ -0.55
UBR4-201ENST00000375218 SSFA2P28290 1259 aa11.59□□□□□ -0.55
UBR4-201ENST00000375218 GTPBP6O43824 516 aaPredicted RBP11.58□□□□□ -0.55
UBR4-201ENST00000375218 ARID4AP29374 1257 aaPredicted RBP11.58□□□□□ -0.55
UBR4-201ENST00000375218 SPOCK3Q9BQ16 436 aa11.58□□□□□ -0.55
UBR4-201ENST00000375218 ANKRD30BQ9BXX2 1392 aa11.58□□□□□ -0.56
UBR4-201ENST00000375218 SEMA3FQ13275 785 aa11.58□□□□□ -0.56
UBR4-201ENST00000375218 RGL3Q3MIN7 710 aa11.58□□□□□ -0.56
UBR4-201ENST00000375218 CC2D1BQ5T0F9 858 aaKnown RBP11.58□□□□□ -0.56
UBR4-201ENST00000375218 POM121Q96HA1 1249 aa11.58□□□□□ -0.56
UBR4-201ENST00000375218 CEP152O94986 1710 aa11.58□□□□□ -0.56
UBR4-201ENST00000375218 LMOD3Q0VAK6 560 aa11.57□□□□□ -0.56
UBR4-201ENST00000375218 AMOTL2Q9Y2J4 779 aa11.57□□□□□ -0.56
UBR4-201ENST00000375218 ATP1B4Q9UN42 357 aaPredicted RBP11.57□□□□□ -0.56
UBR4-201ENST00000375218 IVNS1ABPQ9Y6Y0 642 aa11.57□□□□□ -0.56
UBR4-201ENST00000375218 PDE6BP35913 854 aa11.57□□□□□ -0.56
UBR4-201ENST00000375218 FLIIQ13045 1269 aa11.56□□□□□ -0.56
UBR4-201ENST00000375218 ZC3H4Q9UPT8 1303 aaKnown RBP11.56□□□□□ -0.56
UBR4-201ENST00000375218 MYO5BQ9ULV0 1848 aa11.56□□□□□ -0.56
UBR4-201ENST00000375218 ATL2Q8NHH9 583 aa11.56□□□□□ -0.56
UBR4-201ENST00000375218 RRP7BPQ9NSQ0 103 aa11.56□□□□□ -0.56
UBR4-201ENST00000375218 CHIC2Q9UKJ5 165 aa11.56□□□□□ -0.56
UBR4-201ENST00000375218 IGSF5Q9NSI5 407 aa11.55□□□□□ -0.56
UBR4-201ENST00000375218 ERBB3P21860 1342 aa11.55□□□□□ -0.56
UBR4-201ENST00000375218 C9orf84Q5VXU9 1444 aa11.55□□□□□ -0.56
UBR4-201ENST00000375218 SPATA31E1Q6ZUB1 1445 aa11.55□□□□□ -0.56
UBR4-201ENST00000375218 NBPF1Q3BBV0 1214 aa11.55□□□□□ -0.56
UBR4-201ENST00000375218 SREK1Q8WXA9 508 aaKnown RBP11.55□□□□□ -0.56
UBR4-201ENST00000375218 RHBDL3P58872 404 aa11.54□□□□□ -0.56
UBR4-201ENST00000375218 NBPF11Q86T75 865 aa11.54□□□□□ -0.56
UBR4-201ENST00000375218 EPB41L2O43491 1005 aaKnown RBP11.54□□□□□ -0.56
UBR4-201ENST00000375218 CCER1Q8TC90 406 aaPredicted RBP11.54□□□□□ -0.56
UBR4-201ENST00000375218 GPATCH3Q96I76 525 aa11.54□□□□□ -0.56
UBR4-201ENST00000375218 UGGT1Q9NYU2 1555 aa11.54□□□□□ -0.56
UBR4-201ENST00000375218 FAM135AQ9P2D6 1515 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms