RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MROH1Q8NDA8 1641 aa21.01■□□□□ 0.95
SDC4-201ENST00000372733 POGKQ9P215 609 aa21.01■□□□□ 0.95
SDC4-201ENST00000372733 MYO3AQ8NEV4 1616 aa21.01■□□□□ 0.95
SDC4-201ENST00000372733 PRKCSHP14314 528 aaPredicted RBP21.01■□□□□ 0.95
SDC4-201ENST00000372733 BECN1Q14457 450 aa21.01■□□□□ 0.95
SDC4-201ENST00000372733 TCP11L2Q8N4U5 519 aa21.01■□□□□ 0.95
SDC4-201ENST00000372733 RUNDC1Q96C34 613 aa21■□□□□ 0.95
SDC4-201ENST00000372733 IFT172Q9UG01 1749 aa21■□□□□ 0.95
SDC4-201ENST00000372733 UHRF1BP1LA0JNW5 1464 aa21■□□□□ 0.95
SDC4-201ENST00000372733 SBNO2Q9Y2G9 1366 aa21■□□□□ 0.95
SDC4-201ENST00000372733 ARAP3Q8WWN8 1544 aa20.99■□□□□ 0.95
SDC4-201ENST00000372733 KIF1BO60333 1816 aa20.99■□□□□ 0.95
SDC4-201ENST00000372733 PMFBP1Q8TBY8 1022 aa20.98■□□□□ 0.95
SDC4-201ENST00000372733 SLC12A5Q9H2X9 1139 aa20.98■□□□□ 0.95
SDC4-201ENST00000372733 NOS1P29475 1434 aa20.97■□□□□ 0.95
SDC4-201ENST00000372733 PDZRN3Q9UPQ7 1066 aa20.97■□□□□ 0.95
SDC4-201ENST00000372733 TRAK1Q9UPV9 953 aa20.97■□□□□ 0.95
SDC4-201ENST00000372733 NRXN1Q9ULB1 1477 aa20.97■□□□□ 0.95
SDC4-201ENST00000372733 EFCAB6Q5THR3 1501 aa20.97■□□□□ 0.95
SDC4-201ENST00000372733 FANCAO15360 1455 aa20.96■□□□□ 0.95
SDC4-201ENST00000372733 PHF23Q9BUL5 403 aaPredicted RBP20.96■□□□□ 0.95
SDC4-201ENST00000372733 CHGAP10645 457 aaKnown RBP20.94■□□□□ 0.94
SDC4-201ENST00000372733 TBC1D32Q96NH3 1257 aa20.94■□□□□ 0.94
SDC4-201ENST00000372733 PPRC1Q5VV67 1664 aaKnown RBP20.94■□□□□ 0.94
SDC4-201ENST00000372733 ANTXR1Q9H6X2 564 aa20.93■□□□□ 0.94
SDC4-201ENST00000372733 MTHFSP49914 203 aa20.93■□□□□ 0.94
SDC4-201ENST00000372733 UPF2Q9HAU5 1272 aaKnown RBP20.93■□□□□ 0.94
SDC4-201ENST00000372733 ABCA9Q8IUA7 1624 aa20.93■□□□□ 0.94
SDC4-201ENST00000372733 WDR63Q8IWG1 891 aa20.92■□□□□ 0.94
SDC4-201ENST00000372733 ZNF518AQ6AHZ1 1483 aa20.92■□□□□ 0.94
SDC4-201ENST00000372733 QRICH2Q9H0J4 1663 aa20.92■□□□□ 0.94
SDC4-201ENST00000372733 ADGRL1O94910 1474 aa20.91■□□□□ 0.94
SDC4-201ENST00000372733 ZC3H13Q5T200 1668 aaKnown RBP20.91■□□□□ 0.94
SDC4-201ENST00000372733 TBC1D2Q9BYX2 928 aa20.91■□□□□ 0.94
SDC4-201ENST00000372733 ADGRB3O60242 1522 aa20.91■□□□□ 0.94
SDC4-201ENST00000372733 SETBP1Q9Y6X0 1596 aa20.9■□□□□ 0.94
SDC4-201ENST00000372733 AAMPQ13685 434 aa20.9■□□□□ 0.94
SDC4-201ENST00000372733 TMEM132EQ6IEE7 984 aa20.89■□□□□ 0.93
SDC4-201ENST00000372733 ZMYM3Q14202 1370 aa20.89■□□□□ 0.93
SDC4-201ENST00000372733 RWDD1Q9H446 243 aaPredicted RBP20.89■□□□□ 0.93
SDC4-201ENST00000372733 CFAP53Q96M91 514 aa20.88■□□□□ 0.93
SDC4-201ENST00000372733 MVPQ14764 893 aaKnown RBP20.87■□□□□ 0.93
SDC4-201ENST00000372733 CCDC27Q2M243 656 aa20.87■□□□□ 0.93
SDC4-201ENST00000372733 FAM43AQ8N2R8 423 aa20.87■□□□□ 0.93
SDC4-201ENST00000372733 ADGRB1O14514 1584 aa20.86■□□□□ 0.93
SDC4-201ENST00000372733 SPRYD3Q8NCJ5 442 aa20.86■□□□□ 0.93
SDC4-201ENST00000372733 MYH16Q9H6N6 1097 aa20.86■□□□□ 0.93
SDC4-201ENST00000372733 USP32Q8NFA0 1604 aa20.86■□□□□ 0.93
SDC4-201ENST00000372733 U2AF1L5P0DN76 240 aaPredicted RBP20.85■□□□□ 0.93
SDC4-201ENST00000372733 U2AF1Q01081 240 aaKnown RBP eCLIP20.85■□□□□ 0.93
SDC4-201ENST00000372733 FTSJ3Q8IY81 847 aaKnown RBP20.84■□□□□ 0.93
SDC4-201ENST00000372733 TSR2Q969E8 191 aaKnown RBP20.84■□□□□ 0.93
SDC4-201ENST00000372733 C14orf93Q9H972 538 aaKnown RBP20.84■□□□□ 0.93
SDC4-201ENST00000372733 ZKSCAN2Q63HK3 967 aa20.83■□□□□ 0.92
SDC4-201ENST00000372733 ARXQ96QS3 562 aa20.82■□□□□ 0.92
SDC4-201ENST00000372733 PPLO60437 1756 aa20.82■□□□□ 0.92
SDC4-201ENST00000372733 DZIP1LQ8IYY4 767 aaKnown RBP20.82■□□□□ 0.92
SDC4-201ENST00000372733 KIDINS220Q9ULH0 1771 aa20.82■□□□□ 0.92
SDC4-201ENST00000372733 LMTK2Q8IWU2 1503 aa20.81■□□□□ 0.92
SDC4-201ENST00000372733 ADGRB2O60241 1585 aa20.81■□□□□ 0.92
SDC4-201ENST00000372733 MFAP1P55081 439 aaKnown RBP20.8■□□□□ 0.92
SDC4-201ENST00000372733 NPATQ14207 1427 aa20.8■□□□□ 0.92
SDC4-201ENST00000372733 SMC4Q9NTJ3 1288 aa20.8■□□□□ 0.92
SDC4-201ENST00000372733 EIF5BO60841 1220 aaKnown RBP20.79■□□□□ 0.92
SDC4-201ENST00000372733 CFAP65Q6ZU64 1925 aaKnown RBP20.79■□□□□ 0.92
SDC4-201ENST00000372733 TULP4Q9NRJ4 1543 aa20.79■□□□□ 0.92
SDC4-201ENST00000372733 EXOSC9Q06265 439 aaKnown RBP20.78■□□□□ 0.92
SDC4-201ENST00000372733 L1TD1Q5T7N2 865 aaKnown RBP20.78■□□□□ 0.92
SDC4-201ENST00000372733 ANKRD36BQ8N2N9 1353 aa20.78■□□□□ 0.92
SDC4-201ENST00000372733 TRIM27P14373 513 aa20.77■□□□□ 0.92
SDC4-201ENST00000372733 C22orf23Q9BZE7 217 aa20.77■□□□□ 0.92
SDC4-201ENST00000372733 NUTM2DQ5VT03 806 aaPredicted RBP20.77■□□□□ 0.92
SDC4-201ENST00000372733 GLI2P10070 1586 aa20.76■□□□□ 0.91
SDC4-201ENST00000372733 CD109Q6YHK3 1445 aa20.76■□□□□ 0.91
SDC4-201ENST00000372733 ITPRIPQ8IWB1 547 aa20.76■□□□□ 0.91
SDC4-201ENST00000372733 U2SURPO15042 1029 aaKnown RBP20.75■□□□□ 0.91
SDC4-201ENST00000372733 MCM4P33991 863 aa20.75■□□□□ 0.91
SDC4-201ENST00000372733 SSH1Q8WYL5 1049 aa20.75■□□□□ 0.91
SDC4-201ENST00000372733 GZF1Q9H116 711 aaPredicted RBP20.75■□□□□ 0.91
SDC4-201ENST00000372733 CABP2Q9NPB3 220 aa20.75■□□□□ 0.91
SDC4-201ENST00000372733 RRAGDQ9NQL2 400 aaPredicted RBP20.75■□□□□ 0.91
SDC4-201ENST00000372733 NSD2O96028 1365 aa20.75■□□□□ 0.91
SDC4-201ENST00000372733 EVC2Q86UK5 1308 aa20.75■□□□□ 0.91
SDC4-201ENST00000372733 SAFB2Q14151 953 aaKnown RBP eCLIP20.74■□□□□ 0.91
SDC4-201ENST00000372733 NCBP3Q53F19 620 aaKnown RBP20.73■□□□□ 0.91
SDC4-201ENST00000372733 GGT6Q6P531 493 aa20.73■□□□□ 0.91
SDC4-201ENST00000372733 ARHGEF28Q8N1W1 1705 aaKnown RBP20.72■□□□□ 0.91
SDC4-201ENST00000372733 CT47B1P0C2W7 299 aaPredicted RBP20.72■□□□□ 0.91
SDC4-201ENST00000372733 HDAC1Q13547 482 aaPredicted RBP20.72■□□□□ 0.91
SDC4-201ENST00000372733 TMPOP42166 694 aaKnown RBP20.72■□□□□ 0.91
SDC4-201ENST00000372733 TRIM35Q9UPQ4 493 aa20.72■□□□□ 0.91
SDC4-201ENST00000372733 ATF7IPQ6VMQ6 1270 aa20.71■□□□□ 0.91
SDC4-201ENST00000372733 DDX19BQ9UMR2 479 aa20.71■□□□□ 0.91
SDC4-201ENST00000372733 PLEKHF1Q96S99 279 aa20.71■□□□□ 0.91
SDC4-201ENST00000372733 CHMP5Q9NZZ3 219 aa20.71■□□□□ 0.91
SDC4-201ENST00000372733 XRCC6P12956 609 aaKnown RBP eCLIP20.7■□□□□ 0.9
SDC4-201ENST00000372733 RSPH6AQ9H0K4 717 aa20.7■□□□□ 0.9
SDC4-201ENST00000372733 GGNBP2Q9H3C7 697 aa20.7■□□□□ 0.9
SDC4-201ENST00000372733 NOB1Q9ULX3 412 aaKnown RBP20.7■□□□□ 0.9
SDC4-201ENST00000372733 GOLGA6L3A6NEY3 463 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms