RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 SPHKAPQ2M3C7 1700 aa19.52■□□□□ 0.72
LDB3-204ENST00000372066 MST1RQ04912 1400 aa19.51■□□□□ 0.71
LDB3-204ENST00000372066 NRXN3Q9Y4C0 1643 aa19.51■□□□□ 0.71
LDB3-204ENST00000372066 DDX17Q92841 729 aaKnown RBP19.51■□□□□ 0.71
LDB3-204ENST00000372066 RXRBP28702 533 aa19.5■□□□□ 0.71
LDB3-204ENST00000372066 TRPM1Q7Z4N2 1603 aa19.49■□□□□ 0.71
LDB3-204ENST00000372066 ASXL1Q8IXJ9 1541 aa19.49■□□□□ 0.71
LDB3-204ENST00000372066 XRN1Q8IZH2 1706 aaKnown RBP19.48■□□□□ 0.71
LDB3-204ENST00000372066 CLTCL1P53675 1640 aa19.48■□□□□ 0.71
LDB3-204ENST00000372066 USP47Q96K76 1375 aa19.48■□□□□ 0.71
LDB3-204ENST00000372066 NEXMIFQ5QGS0 1516 aa19.48■□□□□ 0.71
LDB3-204ENST00000372066 ADGRL3Q9HAR2 1447 aa19.48■□□□□ 0.71
LDB3-204ENST00000372066 RPGRIP1LQ68CZ1 1315 aa19.47■□□□□ 0.71
LDB3-204ENST00000372066 AFF2P51816 1311 aa19.46■□□□□ 0.71
LDB3-204ENST00000372066 SHPRHQ149N8 1683 aa19.45■□□□□ 0.7
LDB3-204ENST00000372066 UPF1Q92900 1129 aaKnown RBP eCLIP19.44■□□□□ 0.7
LDB3-204ENST00000372066 C8orf37Q96NL8 207 aa19.44■□□□□ 0.7
LDB3-204ENST00000372066 ROBO2Q9HCK4 1378 aa19.43■□□□□ 0.7
LDB3-204ENST00000372066 ORAI2Q96SN7 254 aa19.42■□□□□ 0.7
LDB3-204ENST00000372066 KIF7Q2M1P5 1343 aa19.42■□□□□ 0.7
LDB3-204ENST00000372066 PRAG1Q86YV5 1406 aa19.42■□□□□ 0.7
LDB3-204ENST00000372066 C1orf167Q5SNV9 1468 aa19.42■□□□□ 0.7
LDB3-204ENST00000372066 ROCK2O75116 1388 aaKnown RBP19.41■□□□□ 0.7
LDB3-204ENST00000372066 PNPLA6Q8IY17 1366 aa19.41■□□□□ 0.7
LDB3-204ENST00000372066 SETD1AO15047 1707 aaKnown RBP19.41■□□□□ 0.7
LDB3-204ENST00000372066 QTRT2Q9H974 415 aaKnown RBP19.4■□□□□ 0.7
LDB3-204ENST00000372066 ADAMTS2O95450 1211 aa19.4■□□□□ 0.7
LDB3-204ENST00000372066 PTCH1Q13635 1447 aa19.39■□□□□ 0.69
LDB3-204ENST00000372066 NGLY1Q96IV0 654 aa19.39■□□□□ 0.69
LDB3-204ENST00000372066 RGL3Q3MIN7 710 aa19.38■□□□□ 0.69
LDB3-204ENST00000372066 KIF1BO60333 1816 aa19.38■□□□□ 0.69
LDB3-204ENST00000372066 GPRASP1Q5JY77 1395 aa19.37■□□□□ 0.69
LDB3-204ENST00000372066 C11orf95C9JLR9 678 aaPredicted RBP19.37■□□□□ 0.69
LDB3-204ENST00000372066 SOS2Q07890 1332 aaPredicted RBP19.37■□□□□ 0.69
LDB3-204ENST00000372066 RBM6P78332 1123 aaKnown RBP19.36■□□□□ 0.69
LDB3-204ENST00000372066 DCAF11Q8TEB1 546 aa19.36■□□□□ 0.69
LDB3-204ENST00000372066 NHSL1Q5SYE7 1610 aa19.36■□□□□ 0.69
LDB3-204ENST00000372066 CARD11Q9BXL7 1154 aa19.36■□□□□ 0.69
LDB3-204ENST00000372066 ADGRF5Q8IZF2 1346 aa19.35■□□□□ 0.69
LDB3-204ENST00000372066 ESCO1Q5FWF5 840 aa19.35■□□□□ 0.69
LDB3-204ENST00000372066 STK26Q9P289 416 aa19.35■□□□□ 0.69
LDB3-204ENST00000372066 NALCNQ8IZF0 1738 aa19.34■□□□□ 0.69
LDB3-204ENST00000372066 CDK12Q9NYV4 1490 aaPredicted RBP19.33■□□□□ 0.69
LDB3-204ENST00000372066 STAC3Q96MF2 364 aa19.33■□□□□ 0.69
LDB3-204ENST00000372066 WAPLQ7Z5K2 1190 aa19.32■□□□□ 0.68
LDB3-204ENST00000372066 PRKRIP1Q9H875 184 aaPredicted RBP19.31■□□□□ 0.68
LDB3-204ENST00000372066 USP21Q9UK80 565 aa19.3■□□□□ 0.68
LDB3-204ENST00000372066 KIAA1210Q9ULL0 1709 aa19.3■□□□□ 0.68
LDB3-204ENST00000372066 NUTM2FA1L443 756 aa19.29■□□□□ 0.68
LDB3-204ENST00000372066 FOXO3O43524 673 aa19.29■□□□□ 0.68
LDB3-204ENST00000372066 TMEM132EQ6IEE7 984 aa19.29■□□□□ 0.68
LDB3-204ENST00000372066 KDM2AQ9Y2K7 1162 aa19.29■□□□□ 0.68
LDB3-204ENST00000372066 NPHP3Q7Z494 1330 aa19.29■□□□□ 0.68
LDB3-204ENST00000372066 XPCQ01831 940 aaPredicted RBP19.27■□□□□ 0.68
LDB3-204ENST00000372066 RGS12O14924 1447 aa19.27■□□□□ 0.67
LDB3-204ENST00000372066 TRPC5Q9UL62 973 aaPredicted RBP19.27■□□□□ 0.67
LDB3-204ENST00000372066 FNBP4Q8N3X1 1017 aaPredicted RBP19.26■□□□□ 0.67
LDB3-204ENST00000372066 LRPPRCP42704 1394 aaKnown RBP19.25■□□□□ 0.67
LDB3-204ENST00000372066 KTN1Q86UP2 1357 aaKnown RBP19.25■□□□□ 0.67
LDB3-204ENST00000372066 PPLO60437 1756 aa19.24■□□□□ 0.67
LDB3-204ENST00000372066 ABCC11Q96J66 1382 aa19.24■□□□□ 0.67
LDB3-204ENST00000372066 IFT172Q9UG01 1749 aa19.23■□□□□ 0.67
LDB3-204ENST00000372066 PLEKHH1Q9ULM0 1364 aa19.22■□□□□ 0.67
LDB3-204ENST00000372066 ST20-MTHFSA0A0A6YYL1 179 aa19.21■□□□□ 0.67
LDB3-204ENST00000372066 TECPR2O15040 1411 aa19.21■□□□□ 0.67
LDB3-204ENST00000372066 CDC42BPGQ6DT37 1551 aa19.19■□□□□ 0.66
LDB3-204ENST00000372066 MYOM2P54296 1465 aa19.19■□□□□ 0.66
LDB3-204ENST00000372066 C14orf93Q9H972 538 aaKnown RBP19.19■□□□□ 0.66
LDB3-204ENST00000372066 SIRT1Q96EB6 747 aa19.19■□□□□ 0.66
LDB3-204ENST00000372066 PXDNQ92626 1479 aa19.18■□□□□ 0.66
LDB3-204ENST00000372066 ATAD2Q6PL18 1390 aa19.18■□□□□ 0.66
LDB3-204ENST00000372066 PIK3C2GO75747 1445 aa19.17■□□□□ 0.66
LDB3-204ENST00000372066 YTHDC2Q9H6S0 1430 aaKnown RBP19.17■□□□□ 0.66
LDB3-204ENST00000372066 CFAP70Q5T0N1 1121 aa19.17■□□□□ 0.66
LDB3-204ENST00000372066 KRT28Q7Z3Y7 464 aa19.17■□□□□ 0.66
LDB3-204ENST00000372066 SUPT16HQ9Y5B9 1047 aaKnown RBP19.17■□□□□ 0.66
LDB3-204ENST00000372066 ATRNO75882 1429 aa19.17■□□□□ 0.66
LDB3-204ENST00000372066 MRS2Q9HD23 443 aa19.16■□□□□ 0.66
LDB3-204ENST00000372066 SPATA31A3Q5VYP0 1347 aa19.15■□□□□ 0.66
LDB3-204ENST00000372066 GJD4Q96KN9 370 aaPredicted RBP19.15■□□□□ 0.66
LDB3-204ENST00000372066 BCL9LQ86UU0 1499 aa19.14■□□□□ 0.65
LDB3-204ENST00000372066 HNRNPUQ00839 825 aaKnown RBP eCLIP19.14■□□□□ 0.65
LDB3-204ENST00000372066 SAFB2Q14151 953 aaKnown RBP eCLIP19.14■□□□□ 0.65
LDB3-204ENST00000372066 PSME1Q06323 249 aa19.13■□□□□ 0.65
LDB3-204ENST00000372066 PHF8Q9UPP1 1060 aa19.13■□□□□ 0.65
LDB3-204ENST00000372066 COL22A1Q8NFW1 1626 aaPredicted RBP19.12■□□□□ 0.65
LDB3-204ENST00000372066 HAP1P54257 671 aaPredicted RBP19.12■□□□□ 0.65
LDB3-204ENST00000372066 NBPF1Q3BBV0 1214 aa19.12■□□□□ 0.65
LDB3-204ENST00000372066 PRAM1Q96QH2 718 aa19.12■□□□□ 0.65
LDB3-204ENST00000372066 PLEKHG5O94827 1062 aa19.11■□□□□ 0.65
LDB3-204ENST00000372066 UNC5CLQ8IV45 518 aa19.11■□□□□ 0.65
LDB3-204ENST00000372066 POGKQ9P215 609 aa19.11■□□□□ 0.65
LDB3-204ENST00000372066 POLR3GLQ9BT43 218 aa19.1■□□□□ 0.65
LDB3-204ENST00000372066 NEFLP07196 543 aa19.1■□□□□ 0.65
LDB3-204ENST00000372066 RALBP1Q15311 655 aa19.1■□□□□ 0.65
LDB3-204ENST00000372066 LMOD2Q6P5Q4 547 aa19.1■□□□□ 0.65
LDB3-204ENST00000372066 EIF3AQ14152 1382 aaKnown RBP19.09■□□□□ 0.65
LDB3-204ENST00000372066 TMF1P82094 1093 aa19.09■□□□□ 0.65
LDB3-204ENST00000372066 TESK2Q96S53 571 aa19.09■□□□□ 0.65
LDB3-204ENST00000372066 NRXN1Q9ULB1 1477 aa19.08■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms