RNA–Protein interactions for RNA: ENST00000369407.3

PHGDH-201, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 2

Gene PHGDH, Length 3,180 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-201ENST00000369407 MYH16Q9H6N6 1097 aa15.53■□□□□ 0.08
PHGDH-201ENST00000369407 NPC1L1Q9UHC9 1359 aa15.53■□□□□ 0.08
PHGDH-201ENST00000369407 ITPRIPQ8IWB1 547 aa15.53■□□□□ 0.08
PHGDH-201ENST00000369407 HSCBQ8IWL3 235 aa15.53■□□□□ 0.08
PHGDH-201ENST00000369407 ARID3AQ99856 593 aa15.53■□□□□ 0.08
PHGDH-201ENST00000369407 NINLQ9Y2I6 1382 aa15.53■□□□□ 0.08
PHGDH-201ENST00000369407 PREX2Q70Z35 1606 aa15.52■□□□□ 0.08
PHGDH-201ENST00000369407 TTC37Q6PGP7 1564 aa15.52■□□□□ 0.07
PHGDH-201ENST00000369407 MYOM1P52179 1685 aa15.52■□□□□ 0.07
PHGDH-201ENST00000369407 MRE11P49959 708 aa15.52■□□□□ 0.07
PHGDH-201ENST00000369407 GAS2L3Q86XJ1 694 aa15.52■□□□□ 0.07
PHGDH-201ENST00000369407 TRAK1Q9UPV9 953 aa15.52■□□□□ 0.07
PHGDH-201ENST00000369407 IQGAP1P46940 1657 aa15.52■□□□□ 0.07
PHGDH-201ENST00000369407 U2AF1L5P0DN76 240 aaPredicted RBP15.51■□□□□ 0.07
PHGDH-201ENST00000369407 U2AF1Q01081 240 aaKnown RBP eCLIP15.51■□□□□ 0.07
PHGDH-201ENST00000369407 DZIP1LQ8IYY4 767 aaKnown RBP15.51■□□□□ 0.07
PHGDH-201ENST00000369407 CHGAP10645 457 aaKnown RBP15.51■□□□□ 0.07
PHGDH-201ENST00000369407 SMC4Q9NTJ3 1288 aa15.51■□□□□ 0.07
PHGDH-201ENST00000369407 ATP10AO60312 1499 aa15.51■□□□□ 0.07
PHGDH-201ENST00000369407 ZKSCAN2Q63HK3 967 aa15.5■□□□□ 0.07
PHGDH-201ENST00000369407 ERVK-7P63135 1459 aa15.5■□□□□ 0.07
PHGDH-201ENST00000369407 NSD3Q9BZ95 1437 aa15.5■□□□□ 0.07
PHGDH-201ENST00000369407 MAST1Q9Y2H9 1570 aa15.5■□□□□ 0.07
PHGDH-201ENST00000369407 RTEL1-TNFRSF6BF6WH68 1400 aa15.49■□□□□ 0.07
PHGDH-201ENST00000369407 ESPNB1AK53 854 aa15.49■□□□□ 0.07
PHGDH-201ENST00000369407 POLR3AO14802 1390 aaPredicted RBP15.49■□□□□ 0.07
PHGDH-201ENST00000369407 ZNF692Q9BU19 519 aaPredicted RBP15.49■□□□□ 0.07
PHGDH-201ENST00000369407 SLC24A1O60721 1099 aa15.48■□□□□ 0.07
PHGDH-201ENST00000369407 EXOSC9Q06265 439 aaKnown RBP15.48■□□□□ 0.07
PHGDH-201ENST00000369407 TNPO1Q92973 898 aaKnown RBP15.48■□□□□ 0.07
PHGDH-201ENST00000369407 LNPKQ9C0E8 428 aa15.48■□□□□ 0.07
PHGDH-201ENST00000369407 TRIM27P14373 513 aa15.48■□□□□ 0.07
PHGDH-201ENST00000369407 NGEFQ8N5V2 710 aa15.48■□□□□ 0.07
PHGDH-201ENST00000369407 DUOX2Q9NRD8 1548 aa15.47■□□□□ 0.07
PHGDH-201ENST00000369407 WDR63Q8IWG1 891 aa15.47■□□□□ 0.07
PHGDH-201ENST00000369407 TRAPPC8Q9Y2L5 1435 aa15.47■□□□□ 0.07
PHGDH-201ENST00000369407 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.47■□□□□ 0.07
PHGDH-201ENST00000369407 RBM10P98175 930 aaKnown RBP15.47■□□□□ 0.07
PHGDH-201ENST00000369407 TRIM44Q96DX7 344 aaPredicted RBP15.47■□□□□ 0.07
PHGDH-201ENST00000369407 HSP90AB1P08238 724 aaKnown RBP15.46■□□□□ 0.07
PHGDH-201ENST00000369407 TMEM132EQ6IEE7 984 aa15.46■□□□□ 0.07
PHGDH-201ENST00000369407 SSH1Q8WYL5 1049 aa15.46■□□□□ 0.07
PHGDH-201ENST00000369407 SCAPERQ9BY12 1400 aa15.46■□□□□ 0.06
PHGDH-201ENST00000369407 U2SURPO15042 1029 aaKnown RBP15.46■□□□□ 0.06
PHGDH-201ENST00000369407 SPAG9O60271 1321 aaKnown RBP15.45■□□□□ 0.06
PHGDH-201ENST00000369407 DDX11L8A8MPP1 907 aa15.45■□□□□ 0.06
PHGDH-201ENST00000369407 NOB1Q9ULX3 412 aaKnown RBP15.45■□□□□ 0.06
PHGDH-201ENST00000369407 KDM5AP29375 1690 aaKnown RBP15.45■□□□□ 0.06
PHGDH-201ENST00000369407 KIF3BO15066 747 aa15.45■□□□□ 0.06
PHGDH-201ENST00000369407 CD2BP2O95400 341 aaKnown RBP15.45■□□□□ 0.06
PHGDH-201ENST00000369407 RBM42Q9BTD8 480 aaKnown RBP15.45■□□□□ 0.06
PHGDH-201ENST00000369407 PHF23Q9BUL5 403 aaPredicted RBP15.45■□□□□ 0.06
PHGDH-201ENST00000369407 TMEM57Q8N5G2 664 aa15.44■□□□□ 0.06
PHGDH-201ENST00000369407 UGGT1Q9NYU2 1555 aa15.44■□□□□ 0.06
PHGDH-201ENST00000369407 PLXNC1O60486 1568 aa15.44■□□□□ 0.06
PHGDH-201ENST00000369407 EFCAB2Q5VUJ9 269 aa15.44■□□□□ 0.06
PHGDH-201ENST00000369407 NUTM2DQ5VT03 806 aaPredicted RBP15.43■□□□□ 0.06
PHGDH-201ENST00000369407 CLTCL1P53675 1640 aa15.43■□□□□ 0.06
PHGDH-201ENST00000369407 CEP152O94986 1710 aa15.43■□□□□ 0.06
PHGDH-201ENST00000369407 AAMPQ13685 434 aa15.42■□□□□ 0.06
PHGDH-201ENST00000369407 SAFB2Q14151 953 aaKnown RBP eCLIP15.42■□□□□ 0.06
PHGDH-201ENST00000369407 CFAP53Q96M91 514 aa15.42■□□□□ 0.06
PHGDH-201ENST00000369407 C1orf115Q9H7X2 142 aa15.41■□□□□ 0.06
PHGDH-201ENST00000369407 RRP9O43818 475 aaKnown RBP15.4■□□□□ 0.06
PHGDH-201ENST00000369407 ATF7IPQ6VMQ6 1270 aa15.4■□□□□ 0.06
PHGDH-201ENST00000369407 SSFA2P28290 1259 aa15.4■□□□□ 0.06
PHGDH-201ENST00000369407 DDX19BQ9UMR2 479 aa15.4■□□□□ 0.06
PHGDH-201ENST00000369407 IQSEC2Q5JU85 1478 aa15.39■□□□□ 0.06
PHGDH-201ENST00000369407 DDIT3P35638 169 aa15.39■□□□□ 0.05
PHGDH-201ENST00000369407 HDAC1Q13547 482 aaPredicted RBP15.39■□□□□ 0.05
PHGDH-201ENST00000369407 SPHKAPQ2M3C7 1700 aa15.39■□□□□ 0.05
PHGDH-201ENST00000369407 PTPRTO14522 1441 aa15.39■□□□□ 0.05
PHGDH-201ENST00000369407 SMC5Q8IY18 1101 aa15.38■□□□□ 0.05
PHGDH-201ENST00000369407 TRPM2O94759 1503 aa15.38■□□□□ 0.05
PHGDH-201ENST00000369407 SHPRHQ149N8 1683 aa15.38■□□□□ 0.05
PHGDH-201ENST00000369407 ANKRD45Q5TZF3 282 aa15.38■□□□□ 0.05
PHGDH-201ENST00000369407 GBP4Q96PP9 640 aa15.38■□□□□ 0.05
PHGDH-201ENST00000369407 ZMYM3Q14202 1370 aa15.38■□□□□ 0.05
PHGDH-201ENST00000369407 CCDC27Q2M243 656 aa15.37■□□□□ 0.05
PHGDH-201ENST00000369407 RAB3GAP1Q15042 981 aa15.36■□□□□ 0.05
PHGDH-201ENST00000369407 KIF2CQ99661 725 aa15.36■□□□□ 0.05
PHGDH-201ENST00000369407 ZBTB40Q9NUA8 1239 aa15.36■□□□□ 0.05
PHGDH-201ENST00000369407 NCLP19338 710 aaKnown RBP15.36■□□□□ 0.05
PHGDH-201ENST00000369407 RBM25P49756 843 aaKnown RBP15.36■□□□□ 0.05
PHGDH-201ENST00000369407 TRIM35Q9UPQ4 493 aa15.36■□□□□ 0.05
PHGDH-201ENST00000369407 CHD1LQ86WJ1 897 aa15.36■□□□□ 0.05
PHGDH-201ENST00000369407 GAS2L2Q8NHY3 880 aa15.36■□□□□ 0.05
PHGDH-201ENST00000369407 GGNBP2Q9H3C7 697 aa15.36■□□□□ 0.05
PHGDH-201ENST00000369407 CABP2Q9NPB3 220 aa15.36■□□□□ 0.05
PHGDH-201ENST00000369407 TMPOP42166 694 aaKnown RBP15.35■□□□□ 0.05
PHGDH-201ENST00000369407 NUCB1Q02818 461 aa15.35■□□□□ 0.05
PHGDH-201ENST00000369407 STAC3Q96MF2 364 aa15.35■□□□□ 0.05
PHGDH-201ENST00000369407 KIAA1211Q6ZU35 1233 aa15.35■□□□□ 0.05
PHGDH-201ENST00000369407 ZNF518AQ6AHZ1 1483 aa15.34■□□□□ 0.05
PHGDH-201ENST00000369407 NASPP49321 788 aaPredicted RBP15.34■□□□□ 0.05
PHGDH-201ENST00000369407 SNX21Q969T3 373 aa15.34■□□□□ 0.05
PHGDH-201ENST00000369407 DDX49Q9Y6V7 483 aaKnown RBP15.34■□□□□ 0.05
PHGDH-201ENST00000369407 ELL2O00472 640 aaPredicted RBP15.33■□□□□ 0.04
PHGDH-201ENST00000369407 RIPK4P57078 832 aa15.33■□□□□ 0.04
PHGDH-201ENST00000369407 ABCA6Q8N139 1617 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms