RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 FKBP8Q14318 412 aa15.94■□□□□ 0.14
USF1-201ENST00000368019 PPLO60437 1756 aa15.94■□□□□ 0.14
USF1-201ENST00000368019 VGFO15240 615 aaPredicted RBP15.93■□□□□ 0.14
USF1-201ENST00000368019 LRRC59Q96AG4 307 aaKnown RBP15.93■□□□□ 0.14
USF1-201ENST00000368019 PTCH1Q13635 1447 aa15.93■□□□□ 0.14
USF1-201ENST00000368019 RPGRIP1LQ68CZ1 1315 aa15.92■□□□□ 0.14
USF1-201ENST00000368019 C1orf167Q5SNV9 1468 aa15.91■□□□□ 0.14
USF1-201ENST00000368019 ROBO2Q9HCK4 1378 aa15.91■□□□□ 0.14
USF1-201ENST00000368019 NUTM2BA6NNL0 878 aaPredicted RBP15.91■□□□□ 0.14
USF1-201ENST00000368019 NUTM2EB1AL46 878 aaPredicted RBP15.91■□□□□ 0.14
USF1-201ENST00000368019 NUTM2AQ8IVF1 878 aaPredicted RBP15.91■□□□□ 0.14
USF1-201ENST00000368019 DDX17Q92841 729 aaKnown RBP15.91■□□□□ 0.14
USF1-201ENST00000368019 PNPLA6Q8IY17 1366 aa15.9■□□□□ 0.14
USF1-201ENST00000368019 TRIM52Q96A61 297 aa15.9■□□□□ 0.14
USF1-201ENST00000368019 CDK12Q9NYV4 1490 aaPredicted RBP15.9■□□□□ 0.14
USF1-201ENST00000368019 RXRBP28702 533 aa15.89■□□□□ 0.13
USF1-201ENST00000368019 UPF1Q92900 1129 aaKnown RBP eCLIP15.89■□□□□ 0.13
USF1-201ENST00000368019 SLC4A1APQ9BWU0 796 aaKnown RBP15.89■□□□□ 0.13
USF1-201ENST00000368019 AFF2P51816 1311 aa15.89■□□□□ 0.13
USF1-201ENST00000368019 SOS2Q07890 1332 aaPredicted RBP15.87■□□□□ 0.13
USF1-201ENST00000368019 ORAI2Q96SN7 254 aa15.86■□□□□ 0.13
USF1-201ENST00000368019 IFT172Q9UG01 1749 aa15.85■□□□□ 0.13
USF1-201ENST00000368019 FOXD1Q16676 465 aa15.82■□□□□ 0.12
USF1-201ENST00000368019 C8orf37Q96NL8 207 aa15.82■□□□□ 0.12
USF1-201ENST00000368019 SPATA31E1Q6ZUB1 1445 aa15.82■□□□□ 0.12
USF1-201ENST00000368019 CDC42BPGQ6DT37 1551 aa15.82■□□□□ 0.12
USF1-201ENST00000368019 COL22A1Q8NFW1 1626 aaPredicted RBP15.82■□□□□ 0.12
USF1-201ENST00000368019 RBM6P78332 1123 aaKnown RBP15.81■□□□□ 0.12
USF1-201ENST00000368019 ADGRF5Q8IZF2 1346 aa15.81■□□□□ 0.12
USF1-201ENST00000368019 QTRT2Q9H974 415 aaKnown RBP15.81■□□□□ 0.12
USF1-201ENST00000368019 FANCIQ9NVI1 1328 aa15.81■□□□□ 0.12
USF1-201ENST00000368019 RBM19Q9Y4C8 960 aaKnown RBP15.81■□□□□ 0.12
USF1-201ENST00000368019 RGS12O14924 1447 aa15.8■□□□□ 0.12
USF1-201ENST00000368019 TECPR2O15040 1411 aa15.8■□□□□ 0.12
USF1-201ENST00000368019 KNDC1Q76NI1 1749 aa15.79■□□□□ 0.12
USF1-201ENST00000368019 CCDC144AA2RUR9 1427 aa15.78■□□□□ 0.12
USF1-201ENST00000368019 ADAMTS2O95450 1211 aa15.78■□□□□ 0.12
USF1-201ENST00000368019 NGLY1Q96IV0 654 aa15.78■□□□□ 0.12
USF1-201ENST00000368019 MPHOSPH9Q99550 1183 aa15.78■□□□□ 0.12
USF1-201ENST00000368019 MARF1Q9Y4F3 1742 aaKnown RBP15.77■□□□□ 0.12
USF1-201ENST00000368019 ANKRD30BQ9BXX2 1392 aa15.77■□□□□ 0.12
USF1-201ENST00000368019 PXDNQ92626 1479 aa15.77■□□□□ 0.11
USF1-201ENST00000368019 LRPPRCP42704 1394 aaKnown RBP15.76■□□□□ 0.11
USF1-201ENST00000368019 ABCC11Q96J66 1382 aa15.76■□□□□ 0.11
USF1-201ENST00000368019 RGL3Q3MIN7 710 aa15.76■□□□□ 0.11
USF1-201ENST00000368019 FNBP4Q8N3X1 1017 aaPredicted RBP15.76■□□□□ 0.11
USF1-201ENST00000368019 MYOM2P54296 1465 aa15.76■□□□□ 0.11
USF1-201ENST00000368019 NPHP3Q7Z494 1330 aa15.75■□□□□ 0.11
USF1-201ENST00000368019 WAPLQ7Z5K2 1190 aa15.75■□□□□ 0.11
USF1-201ENST00000368019 PIK3C2GO75747 1445 aa15.75■□□□□ 0.11
USF1-201ENST00000368019 FMN2Q9NZ56 1722 aa15.74■□□□□ 0.11
USF1-201ENST00000368019 EIF4G2P78344 907 aaKnown RBP eCLIP15.74■□□□□ 0.11
USF1-201ENST00000368019 ESCO1Q5FWF5 840 aa15.74■□□□□ 0.11
USF1-201ENST00000368019 TMEM132EQ6IEE7 984 aa15.73■□□□□ 0.11
USF1-201ENST00000368019 STK26Q9P289 416 aa15.73■□□□□ 0.11
USF1-201ENST00000368019 USP21Q9UK80 565 aa15.73■□□□□ 0.11
USF1-201ENST00000368019 ATRNO75882 1429 aa15.73■□□□□ 0.11
USF1-201ENST00000368019 PLEKHH1Q9ULM0 1364 aa15.73■□□□□ 0.11
USF1-201ENST00000368019 WASHC2AQ641Q2 1341 aa15.72■□□□□ 0.11
USF1-201ENST00000368019 FOXO3O43524 673 aa15.72■□□□□ 0.11
USF1-201ENST00000368019 TRPC5Q9UL62 973 aaPredicted RBP15.72■□□□□ 0.11
USF1-201ENST00000368019 RGPD8O14715 1765 aaPredicted RBP15.72■□□□□ 0.11
USF1-201ENST00000368019 YTHDC2Q9H6S0 1430 aaKnown RBP15.71■□□□□ 0.11
USF1-201ENST00000368019 SIRT1Q96EB6 747 aa15.71■□□□□ 0.11
USF1-201ENST00000368019 BCL9LQ86UU0 1499 aa15.71■□□□□ 0.1
USF1-201ENST00000368019 EP400Q96L91 3159 aa15.71■□□□□ 0.1
USF1-201ENST00000368019 HSPA5P11021 654 aaKnown RBP15.7■□□□□ 0.1
USF1-201ENST00000368019 CCDC7Q96M83 1385 aa15.7■□□□□ 0.1
USF1-201ENST00000368019 NRXN1Q9ULB1 1477 aa15.7■□□□□ 0.1
USF1-201ENST00000368019 KIF1AQ12756 1690 aa15.7■□□□□ 0.1
USF1-201ENST00000368019 XPCQ01831 940 aaPredicted RBP15.69■□□□□ 0.1
USF1-201ENST00000368019 C14orf93Q9H972 538 aaKnown RBP15.69■□□□□ 0.1
USF1-201ENST00000368019 NUTM2FA1L443 756 aa15.68■□□□□ 0.1
USF1-201ENST00000368019 HNRNPUQ00839 825 aaKnown RBP eCLIP15.68■□□□□ 0.1
USF1-201ENST00000368019 PPP4R2Q9NY27 417 aa15.68■□□□□ 0.1
USF1-201ENST00000368019 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.68■□□□□ 0.1
USF1-201ENST00000368019 ZBED9Q6R2W3 1325 aa15.68■□□□□ 0.1
USF1-201ENST00000368019 HIRIP3Q9BW71 556 aaPredicted RBP15.67■□□□□ 0.1
USF1-201ENST00000368019 SPATA31A3Q5VYP0 1347 aa15.67■□□□□ 0.1
USF1-201ENST00000368019 ATAD2Q6PL18 1390 aa15.66■□□□□ 0.1
USF1-201ENST00000368019 CFAP70Q5T0N1 1121 aa15.64■□□□□ 0.09
USF1-201ENST00000368019 SRCAPQ6ZRS2 3230 aa15.64■□□□□ 0.09
USF1-201ENST00000368019 SLIT2O94813 1529 aa15.63■□□□□ 0.09
USF1-201ENST00000368019 KRT28Q7Z3Y7 464 aa15.63■□□□□ 0.09
USF1-201ENST00000368019 GJD4Q96KN9 370 aaPredicted RBP15.63■□□□□ 0.09
USF1-201ENST00000368019 USP32Q8NFA0 1604 aa15.62■□□□□ 0.09
USF1-201ENST00000368019 PRKRIP1Q9H875 184 aaPredicted RBP15.62■□□□□ 0.09
USF1-201ENST00000368019 DLC1Q96QB1 1528 aa15.62■□□□□ 0.09
USF1-201ENST00000368019 GLI3P10071 1580 aa15.62■□□□□ 0.09
USF1-201ENST00000368019 PHF8Q9UPP1 1060 aa15.61■□□□□ 0.09
USF1-201ENST00000368019 BRWD3Q6RI45 1802 aa15.6■□□□□ 0.09
USF1-201ENST00000368019 UNC5CLQ8IV45 518 aa15.6■□□□□ 0.09
USF1-201ENST00000368019 ADGRB1O14514 1584 aa15.6■□□□□ 0.09
USF1-201ENST00000368019 ABCA3Q99758 1704 aa15.6■□□□□ 0.09
USF1-201ENST00000368019 TNS3Q68CZ2 1445 aa15.6■□□□□ 0.09
USF1-201ENST00000368019 PRAM1Q96QH2 718 aa15.59■□□□□ 0.09
USF1-201ENST00000368019 SBNO1A3KN83 1393 aa15.59■□□□□ 0.09
USF1-201ENST00000368019 SMG6Q86US8 1419 aaKnown RBP15.59■□□□□ 0.09
USF1-201ENST00000368019 RALGAPBQ86X10 1494 aa15.59■□□□□ 0.09
USF1-201ENST00000368019 ADGRB2O60241 1585 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms