RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SPINK5Q9NQ38 1064 aaPredicted RBP27.35■■□□□ 1.97
CCDC88B-203ENST00000359902 CGNL1Q0VF96 1302 aa27.35■■□□□ 1.97
CCDC88B-203ENST00000359902 RIMBP3CA6NJZ7 1639 aa27.34■■□□□ 1.97
CCDC88B-203ENST00000359902 RIMBP3BA6NNM3 1639 aa27.34■■□□□ 1.97
CCDC88B-203ENST00000359902 RIMBP3Q9UFD9 1639 aa27.34■■□□□ 1.97
CCDC88B-203ENST00000359902 DIP2BQ9P265 1576 aa27.34■■□□□ 1.97
CCDC88B-203ENST00000359902 TNNT2P45379 298 aaPredicted RBP27.34■■□□□ 1.97
CCDC88B-203ENST00000359902 FBXO31Q5XUX0 539 aaPredicted RBP27.34■■□□□ 1.97
CCDC88B-203ENST00000359902 ANKRD36BQ8N2N9 1353 aa27.32■■□□□ 1.96
CCDC88B-203ENST00000359902 CABP2Q9NPB3 220 aa27.32■■□□□ 1.96
CCDC88B-203ENST00000359902 STK26Q9P289 416 aa27.31■■□□□ 1.96
CCDC88B-203ENST00000359902 SHPRHQ149N8 1683 aa27.3■■□□□ 1.96
CCDC88B-203ENST00000359902 E9PSI1 815 aa27.3■■□□□ 1.96
CCDC88B-203ENST00000359902 TCERG1O14776 1098 aaKnown RBP27.3■■□□□ 1.96
CCDC88B-203ENST00000359902 SAFB2Q14151 953 aaKnown RBP eCLIP27.3■■□□□ 1.96
CCDC88B-203ENST00000359902 SENP3Q9H4L4 574 aaPredicted RBP27.29■■□□□ 1.96
CCDC88B-203ENST00000359902 NKTRP30414 1462 aaKnown RBP27.28■■□□□ 1.96
CCDC88B-203ENST00000359902 DMRT2Q9Y5R5 561 aa27.28■■□□□ 1.96
CCDC88B-203ENST00000359902 MTHFSP49914 203 aa27.27■■□□□ 1.96
CCDC88B-203ENST00000359902 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.27■■□□□ 1.96
CCDC88B-203ENST00000359902 NSD2O96028 1365 aa27.26■■□□□ 1.95
CCDC88B-203ENST00000359902 PTPRMP28827 1452 aa27.25■■□□□ 1.95
CCDC88B-203ENST00000359902 TSPOAP1O95153 1857 aa27.25■■□□□ 1.95
CCDC88B-203ENST00000359902 WWC1Q8IX03 1113 aa27.24■■□□□ 1.95
CCDC88B-203ENST00000359902 REREQ9P2R6 1566 aa27.24■■□□□ 1.95
CCDC88B-203ENST00000359902 PPP6R1Q9UPN7 881 aa27.23■■□□□ 1.95
CCDC88B-203ENST00000359902 AGLP35573 1532 aa27.23■■□□□ 1.95
CCDC88B-203ENST00000359902 RUNDC1Q96C34 613 aa27.23■■□□□ 1.95
CCDC88B-203ENST00000359902 YTHDC2Q9H6S0 1430 aaKnown RBP27.23■■□□□ 1.95
CCDC88B-203ENST00000359902 ERICH6Q7L0X2 663 aa27.22■■□□□ 1.95
CCDC88B-203ENST00000359902 NINLQ9Y2I6 1382 aa27.22■■□□□ 1.95
CCDC88B-203ENST00000359902 SRPK2P78362 688 aaKnown RBP27.21■■□□□ 1.95
CCDC88B-203ENST00000359902 PRAM1Q96QH2 718 aa27.21■■□□□ 1.95
CCDC88B-203ENST00000359902 MS4A1P11836 297 aa27.21■■□□□ 1.95
CCDC88B-203ENST00000359902 CFAP53Q96M91 514 aa27.21■■□□□ 1.95
CCDC88B-203ENST00000359902 A0A1W2PP64 1363 aa27.19■■□□□ 1.94
CCDC88B-203ENST00000359902 ALKQ9UM73 1620 aa27.18■■□□□ 1.94
CCDC88B-203ENST00000359902 STAG3Q9UJ98 1225 aa27.18■■□□□ 1.94
CCDC88B-203ENST00000359902 POGKQ9P215 609 aa27.18■■□□□ 1.94
CCDC88B-203ENST00000359902 MINK1Q8N4C8 1332 aaPredicted RBP27.18■■□□□ 1.94
CCDC88B-203ENST00000359902 KDM2BQ8NHM5 1336 aa27.18■■□□□ 1.94
CCDC88B-203ENST00000359902 ABCC11Q96J66 1382 aa27.17■■□□□ 1.94
CCDC88B-203ENST00000359902 BCAR3O75815 825 aa27.17■■□□□ 1.94
CCDC88B-203ENST00000359902 TCP11L2Q8N4U5 519 aa27.17■■□□□ 1.94
CCDC88B-203ENST00000359902 IQSEC2Q5JU85 1478 aa27.17■■□□□ 1.94
CCDC88B-203ENST00000359902 PHF23Q9BUL5 403 aaPredicted RBP27.16■■□□□ 1.94
CCDC88B-203ENST00000359902 ATAD2Q6PL18 1390 aa27.16■■□□□ 1.94
CCDC88B-203ENST00000359902 PDE4AP27815 886 aa27.16■■□□□ 1.94
CCDC88B-203ENST00000359902 ANP32AP39687 249 aaKnown RBP27.15■■□□□ 1.94
CCDC88B-203ENST00000359902 CLTCQ00610 1675 aaKnown RBP27.15■■□□□ 1.94
CCDC88B-203ENST00000359902 NEUROD2Q15784 382 aa27.15■■□□□ 1.94
CCDC88B-203ENST00000359902 RRP7AQ9Y3A4 280 aaKnown RBP27.15■■□□□ 1.94
CCDC88B-203ENST00000359902 BACH2Q9BYV9 841 aa27.13■■□□□ 1.93
CCDC88B-203ENST00000359902 TERF2IPQ9NYB0 399 aa27.12■■□□□ 1.93
CCDC88B-203ENST00000359902 CENPQQ7L2Z9 268 aaPredicted RBP27.11■■□□□ 1.93
CCDC88B-203ENST00000359902 NOP58Q9Y2X3 529 aaKnown RBP27.11■■□□□ 1.93
CCDC88B-203ENST00000359902 A2ML1A8K2U0 1454 aa27.11■■□□□ 1.93
CCDC88B-203ENST00000359902 SKAP1Q86WV1 359 aa27.11■■□□□ 1.93
CCDC88B-203ENST00000359902 IPO9Q96P70 1041 aaKnown RBP27.11■■□□□ 1.93
CCDC88B-203ENST00000359902 SPATA31D1Q6ZQQ2 1576 aa27.11■■□□□ 1.93
CCDC88B-203ENST00000359902 CD163L1Q9NR16 1453 aa27.11■■□□□ 1.93
CCDC88B-203ENST00000359902 WDR63Q8IWG1 891 aa27.1■■□□□ 1.93
CCDC88B-203ENST00000359902 GGNBP2Q9H3C7 697 aa27.1■■□□□ 1.93
CCDC88B-203ENST00000359902 CCDC27Q2M243 656 aa27.09■■□□□ 1.93
CCDC88B-203ENST00000359902 CDK19Q9BWU1 502 aa27.08■■□□□ 1.93
CCDC88B-203ENST00000359902 FYB1O15117 783 aa27.08■■□□□ 1.93
CCDC88B-203ENST00000359902 ARHGEF40Q8TER5 1519 aa27.08■■□□□ 1.93
CCDC88B-203ENST00000359902 U2AF1L5P0DN76 240 aaPredicted RBP27.07■■□□□ 1.92
CCDC88B-203ENST00000359902 U2AF1Q01081 240 aaKnown RBP eCLIP27.07■■□□□ 1.92
CCDC88B-203ENST00000359902 MLECQ14165 292 aa27.07■■□□□ 1.92
CCDC88B-203ENST00000359902 NCBP3Q53F19 620 aaKnown RBP27.07■■□□□ 1.92
CCDC88B-203ENST00000359902 RIMS2Q9UQ26 1411 aa27.06■■□□□ 1.92
CCDC88B-203ENST00000359902 PAK3O75914 559 aaPredicted RBP27.05■■□□□ 1.92
CCDC88B-203ENST00000359902 MED14O60244 1454 aa27.05■■□□□ 1.92
CCDC88B-203ENST00000359902 NLRP1Q9C000 1473 aa27.04■■□□□ 1.92
CCDC88B-203ENST00000359902 PDE3AQ14432 1141 aa27.04■■□□□ 1.92
CCDC88B-203ENST00000359902 HDGFL2Q7Z4V5 671 aaPredicted RBP27.02■■□□□ 1.92
CCDC88B-203ENST00000359902 CABP1Q9NZU7 370 aa27.02■■□□□ 1.92
CCDC88B-203ENST00000359902 DLC1Q96QB1 1528 aa27.02■■□□□ 1.92
CCDC88B-203ENST00000359902 ANKRD26Q9UPS8 1709 aa27.01■■□□□ 1.91
CCDC88B-203ENST00000359902 WAPLQ7Z5K2 1190 aa27■■□□□ 1.91
CCDC88B-203ENST00000359902 COL3A1P02461 1466 aaPredicted RBP27■■□□□ 1.91
CCDC88B-203ENST00000359902 RARSP54136 660 aaKnown RBP27■■□□□ 1.91
CCDC88B-203ENST00000359902 ADGRB2O60241 1585 aa27■■□□□ 1.91
CCDC88B-203ENST00000359902 SETD1AO15047 1707 aaKnown RBP26.99■■□□□ 1.91
CCDC88B-203ENST00000359902 PLEKHF1Q96S99 279 aa26.98■■□□□ 1.91
CCDC88B-203ENST00000359902 NPM2Q86SE8 214 aaKnown RBP26.97■■□□□ 1.91
CCDC88B-203ENST00000359902 ZBTB47Q9UFB7 747 aaPredicted RBP26.97■■□□□ 1.91
CCDC88B-203ENST00000359902 U2SURPO15042 1029 aaKnown RBP26.96■■□□□ 1.91
CCDC88B-203ENST00000359902 BCL11AQ9H165 835 aa26.95■■□□□ 1.91
CCDC88B-203ENST00000359902 CANXP27824 592 aaKnown RBP26.95■■□□□ 1.9
CCDC88B-203ENST00000359902 PANK1Q8TE04 598 aa26.95■■□□□ 1.9
CCDC88B-203ENST00000359902 MYH16Q9H6N6 1097 aa26.95■■□□□ 1.9
CCDC88B-203ENST00000359902 ZMYM3Q14202 1370 aa26.95■■□□□ 1.9
CCDC88B-203ENST00000359902 KIF13AQ9H1H9 1805 aa26.94■■□□□ 1.9
CCDC88B-203ENST00000359902 FRAT1Q92837 279 aaPredicted RBP26.93■■□□□ 1.9
CCDC88B-203ENST00000359902 COG6Q9Y2V7 657 aa26.93■■□□□ 1.9
CCDC88B-203ENST00000359902 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.92■■□□□ 1.9
CCDC88B-203ENST00000359902 PNPLA6Q8IY17 1366 aa26.92■■□□□ 1.9
CCDC88B-203ENST00000359902 NRXN3Q9Y4C0 1643 aa26.91■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms