RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 RAB3GAP2Q9H2M9 1393 aa8.98□□□□□ -0.97
VPS13A-202ENST00000357409 CFAP70Q5T0N1 1121 aa8.98□□□□□ -0.97
VPS13A-202ENST00000357409 TSR1Q2NL82 804 aaKnown RBP8.98□□□□□ -0.97
VPS13A-202ENST00000357409 R3HCC1Q9Y3T6 440 aaKnown RBP8.98□□□□□ -0.97
VPS13A-202ENST00000357409 MPHOSPH10O00566 681 aaKnown RBP8.98□□□□□ -0.97
VPS13A-202ENST00000357409 SURF6O75683 361 aaKnown RBP8.98□□□□□ -0.97
VPS13A-202ENST00000357409 PDE3BQ13370 1112 aa8.97□□□□□ -0.97
VPS13A-202ENST00000357409 NUP133Q8WUM0 1156 aa8.97□□□□□ -0.97
VPS13A-202ENST00000357409 ODF2Q5BJF6 829 aa8.97□□□□□ -0.97
VPS13A-202ENST00000357409 CT47A1Q5JQC4 288 aaPredicted RBP8.97□□□□□ -0.97
VPS13A-202ENST00000357409 LIG1P18858 919 aa8.97□□□□□ -0.97
VPS13A-202ENST00000357409 DHX8Q14562 1220 aaKnown RBP8.97□□□□□ -0.97
VPS13A-202ENST00000357409 EEA1Q15075 1411 aa8.96□□□□□ -0.97
VPS13A-202ENST00000357409 FBLN1P23142 703 aa8.96□□□□□ -0.97
VPS13A-202ENST00000357409 CABP4P57796 275 aa8.96□□□□□ -0.97
VPS13A-202ENST00000357409 FAM177A1Q8N128 213 aaPredicted RBP8.96□□□□□ -0.97
VPS13A-202ENST00000357409 TSR2Q969E8 191 aaKnown RBP8.96□□□□□ -0.97
VPS13A-202ENST00000357409 ST18O60284 1047 aa8.96□□□□□ -0.97
VPS13A-202ENST00000357409 ABCF2Q9UG63 623 aa8.96□□□□□ -0.97
VPS13A-202ENST00000357409 HTATSF1O43719 755 aaKnown RBP8.96□□□□□ -0.98
VPS13A-202ENST00000357409 TTLL12Q14166 644 aaPredicted RBP8.96□□□□□ -0.98
VPS13A-202ENST00000357409 HOMER1Q86YM7 354 aa8.96□□□□□ -0.98
VPS13A-202ENST00000357409 RAPGEF3O95398 923 aa8.96□□□□□ -0.98
VPS13A-202ENST00000357409 CA8P35219 290 aa8.96□□□□□ -0.98
VPS13A-202ENST00000357409 MTHFSP49914 203 aa8.96□□□□□ -0.98
VPS13A-202ENST00000357409 MPRIPQ6WCQ1 1025 aa8.96□□□□□ -0.98
VPS13A-202ENST00000357409 IL1RAPL2Q9NP60 686 aa8.96□□□□□ -0.98
VPS13A-202ENST00000357409 SLC12A5Q9H2X9 1139 aa8.95□□□□□ -0.98
VPS13A-202ENST00000357409 PSMD1Q99460 953 aa8.95□□□□□ -0.98
VPS13A-202ENST00000357409 VGFO15240 615 aaPredicted RBP8.95□□□□□ -0.98
VPS13A-202ENST00000357409 ACSBG1Q96GR2 724 aa8.95□□□□□ -0.98
VPS13A-202ENST00000357409 FHOD3Q2V2M9 1422 aa8.95□□□□□ -0.98
VPS13A-202ENST00000357409 TSHZ2Q9NRE2 1034 aa8.94□□□□□ -0.98
VPS13A-202ENST00000357409 HSP90AB2PQ58FF8 381 aa8.94□□□□□ -0.98
VPS13A-202ENST00000357409 MATR3P43243 847 aaKnown RBP eCLIP8.94□□□□□ -0.983e-6■■■■□ 20.9
VPS13A-202ENST00000357409 PRAM1Q96QH2 718 aa8.94□□□□□ -0.98
VPS13A-202ENST00000357409 DDX58O95786 925 aaKnown RBP8.94□□□□□ -0.98
VPS13A-202ENST00000357409 SULT6B1Q6IMI4 303 aa8.94□□□□□ -0.98
VPS13A-202ENST00000357409 WAPLQ7Z5K2 1190 aa8.94□□□□□ -0.98
VPS13A-202ENST00000357409 GOLGA6L1Q8N7Z2 621 aa8.94□□□□□ -0.98
VPS13A-202ENST00000357409 ZKSCAN2Q63HK3 967 aa8.94□□□□□ -0.98
VPS13A-202ENST00000357409 PIP4K2AP48426 406 aaPredicted RBP8.94□□□□□ -0.98
VPS13A-202ENST00000357409 GUCY1B3Q02153 619 aa8.94□□□□□ -0.98
VPS13A-202ENST00000357409 RBM26Q5T8P6 1007 aaKnown RBP8.93□□□□□ -0.98
VPS13A-202ENST00000357409 CCDC97Q96F63 343 aaPredicted RBP8.93□□□□□ -0.98
VPS13A-202ENST00000357409 DNAJC5BQ9UF47 199 aa8.93□□□□□ -0.98
VPS13A-202ENST00000357409 SETD5Q9C0A6 1442 aa8.93□□□□□ -0.98
VPS13A-202ENST00000357409 SSBP05455 408 aaKnown RBP eCLIP8.93□□□□□ -0.98
VPS13A-202ENST00000357409 TTC39AQ5SRH9 613 aa8.93□□□□□ -0.98
VPS13A-202ENST00000357409 TMX1Q9H3N1 280 aa8.93□□□□□ -0.98
VPS13A-202ENST00000357409 ANKRD62A6NC57 917 aa8.93□□□□□ -0.98
VPS13A-202ENST00000357409 EVC2Q86UK5 1308 aa8.93□□□□□ -0.98
VPS13A-202ENST00000357409 SPC24Q8NBT2 197 aa8.93□□□□□ -0.98
VPS13A-202ENST00000357409 GPTP24298 496 aa8.92□□□□□ -0.98
VPS13A-202ENST00000357409 PDE4AP27815 886 aa8.92□□□□□ -0.98
VPS13A-202ENST00000357409 KIF6Q6ZMV9 814 aa8.92□□□□□ -0.98
VPS13A-202ENST00000357409 SMC3Q9UQE7 1217 aa8.92□□□□□ -0.98
VPS13A-202ENST00000357409 BCAR3O75815 825 aa8.92□□□□□ -0.98
VPS13A-202ENST00000357409 ZNF622Q969S3 477 aaKnown RBP eCLIP8.92□□□□□ -0.982e-6■■□□□ 14.3
VPS13A-202ENST00000357409 PDS5BQ9NTI5 1447 aa8.92□□□□□ -0.98
VPS13A-202ENST00000357409 TPM2P07951 284 aa8.92□□□□□ -0.98
VPS13A-202ENST00000357409 EPS15P42566 896 aa8.92□□□□□ -0.98
VPS13A-202ENST00000357409 RALYLQ86SE5 291 aaKnown RBP8.92□□□□□ -0.98
VPS13A-202ENST00000357409 FSD1Q9BTV5 496 aa8.92□□□□□ -0.98
VPS13A-202ENST00000357409 EXOSC9Q06265 439 aaKnown RBP8.92□□□□□ -0.98
VPS13A-202ENST00000357409 CPLX2Q6PUV4 134 aaKnown RBP8.92□□□□□ -0.98
VPS13A-202ENST00000357409 THUMPD2Q9BTF0 503 aaKnown RBP8.92□□□□□ -0.98
VPS13A-202ENST00000357409 ABCC8Q09428 1581 aa8.91□□□□□ -0.98
VPS13A-202ENST00000357409 CABP1Q9NZU7 370 aa8.91□□□□□ -0.98
VPS13A-202ENST00000357409 SPDYE4A6NLX3 237 aa8.91□□□□□ -0.98
VPS13A-202ENST00000357409 RALBP1Q15311 655 aa8.91□□□□□ -0.98
VPS13A-202ENST00000357409 LMOD3Q0VAK6 560 aa8.91□□□□□ -0.98
VPS13A-202ENST00000357409 SLC4A2P04920 1241 aa8.91□□□□□ -0.98
VPS13A-202ENST00000357409 UBTFL1P0CB47 393 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-202ENST00000357409 NBPF1Q3BBV0 1214 aa8.9□□□□□ -0.98
VPS13A-202ENST00000357409 SYAP1Q96A49 352 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-202ENST00000357409 PLCD4Q9BRC7 762 aa8.9□□□□□ -0.98
VPS13A-202ENST00000357409 VAT1LQ9HCJ6 419 aa8.9□□□□□ -0.98
VPS13A-202ENST00000357409 F8W031 263 aaPredicted RBP8.9□□□□□ -0.98
VPS13A-202ENST00000357409 CLEC11AQ9Y240 323 aa8.9□□□□□ -0.98
VPS13A-202ENST00000357409 CARMIL2Q6F5E8 1435 aa8.9□□□□□ -0.98
VPS13A-202ENST00000357409 MINDY4BA8MYZ0 360 aa8.9□□□□□ -0.99
VPS13A-202ENST00000357409 RAB11FIP4Q86YS3 637 aa8.9□□□□□ -0.99
VPS13A-202ENST00000357409 TANGO6Q9C0B7 1094 aa8.9□□□□□ -0.99
VPS13A-202ENST00000357409 ANKRD30AQ9BXX3 1397 aa8.9□□□□□ -0.99
VPS13A-202ENST00000357409 PRKAR2BP31323 418 aa8.89□□□□□ -0.99
VPS13A-202ENST00000357409 ZKSCAN1P17029 563 aaPredicted RBP8.89□□□□□ -0.99
VPS13A-202ENST00000357409 CHRNA2Q15822 529 aa8.89□□□□□ -0.99
VPS13A-202ENST00000357409 SASS6Q6UVJ0 657 aa8.89□□□□□ -0.99
VPS13A-202ENST00000357409 FAM13BQ9NYF5 915 aa8.89□□□□□ -0.99
VPS13A-202ENST00000357409 FOXO3O43524 673 aa8.89□□□□□ -0.99
VPS13A-202ENST00000357409 KRT18P05783 430 aaKnown RBP8.89□□□□□ -0.99
VPS13A-202ENST00000357409 CCDC34Q96HJ3 373 aa8.89□□□□□ -0.99
VPS13A-202ENST00000357409 PDCL3Q9H2J4 239 aa8.89□□□□□ -0.99
VPS13A-202ENST00000357409 OFD1O75665 1012 aa8.89□□□□□ -0.99
VPS13A-202ENST00000357409 ADAMTS8Q9UP79 889 aa8.89□□□□□ -0.99
VPS13A-202ENST00000357409 SEPT11Q9NVA2 429 aaKnown RBP8.89□□□□□ -0.99
VPS13A-202ENST00000357409 TATP17735 454 aaPredicted RBP8.88□□□□□ -0.99
VPS13A-202ENST00000357409 NGLY1Q96IV0 654 aa8.88□□□□□ -0.99
VPS13A-202ENST00000357409 IPO9Q96P70 1041 aaKnown RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms