RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 HMOX1P09601 288 aa14.34□□□□□ -0.11
COL9A1-202ENST00000357250 FRAT2O75474 233 aaPredicted RBP14.34□□□□□ -0.11
COL9A1-202ENST00000357250 PTPRKQ15262 1439 aa14.33□□□□□ -0.11
COL9A1-202ENST00000357250 CUL7Q14999 1698 aa14.33□□□□□ -0.12
COL9A1-202ENST00000357250 IFIT2P09913 472 aaKnown RBP14.33□□□□□ -0.12
COL9A1-202ENST00000357250 TPM1P09493 284 aa14.33□□□□□ -0.12
COL9A1-202ENST00000357250 ERC2O15083 957 aa14.33□□□□□ -0.12
COL9A1-202ENST00000357250 TSR1Q2NL82 804 aaKnown RBP14.33□□□□□ -0.12
COL9A1-202ENST00000357250 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.32□□□□□ -0.12
COL9A1-202ENST00000357250 MTHFSP49914 203 aa14.32□□□□□ -0.12
COL9A1-202ENST00000357250 CCDC9Q9Y3X0 531 aaKnown RBP14.32□□□□□ -0.12
COL9A1-202ENST00000357250 WWC1Q8IX03 1113 aa14.31□□□□□ -0.12
COL9A1-202ENST00000357250 CAMSAP2Q08AD1 1489 aa14.31□□□□□ -0.12
COL9A1-202ENST00000357250 G3V3G9 751 aa14.31□□□□□ -0.12
COL9A1-202ENST00000357250 DCAF8Q5TAQ9 597 aa14.31□□□□□ -0.12
COL9A1-202ENST00000357250 NINLQ9Y2I6 1382 aa14.31□□□□□ -0.12
COL9A1-202ENST00000357250 G3BP1Q13283 466 aaKnown RBP eCLIP14.31□□□□□ -0.12
COL9A1-202ENST00000357250 PRAM1Q96QH2 718 aa14.3□□□□□ -0.12
COL9A1-202ENST00000357250 PTPN23Q9H3S7 1636 aa14.3□□□□□ -0.12
COL9A1-202ENST00000357250 TPM2P07951 284 aa14.3□□□□□ -0.12
COL9A1-202ENST00000357250 FKBP5Q13451 457 aaPredicted RBP14.3□□□□□ -0.12
COL9A1-202ENST00000357250 THOC2Q8NI27 1593 aaKnown RBP14.3□□□□□ -0.12
COL9A1-202ENST00000357250 ANKRD30BQ9BXX2 1392 aa14.3□□□□□ -0.12
COL9A1-202ENST00000357250 TRIM29Q14134 588 aa14.3□□□□□ -0.12
COL9A1-202ENST00000357250 TXNDC2Q86VQ3 553 aa14.3□□□□□ -0.12
COL9A1-202ENST00000357250 HOOK1Q9UJC3 728 aaKnown RBP14.3□□□□□ -0.12
COL9A1-202ENST00000357250 CT47B1P0C2W7 299 aaPredicted RBP14.29□□□□□ -0.12
COL9A1-202ENST00000357250 PDE3AQ14432 1141 aa14.29□□□□□ -0.12
COL9A1-202ENST00000357250 NECTIN2Q92692 538 aa14.29□□□□□ -0.12
COL9A1-202ENST00000357250 MARCH6O60337 910 aa14.29□□□□□ -0.12
COL9A1-202ENST00000357250 AMOTL1Q8IY63 956 aa14.29□□□□□ -0.12
COL9A1-202ENST00000357250 TPD52L1Q16890 204 aaPredicted RBP14.29□□□□□ -0.12
COL9A1-202ENST00000357250 CEP89Q96ST8 783 aa14.28□□□□□ -0.12
COL9A1-202ENST00000357250 C22orf23Q9BZE7 217 aa14.28□□□□□ -0.12
COL9A1-202ENST00000357250 CDC45O75419 566 aa14.28□□□□□ -0.12
COL9A1-202ENST00000357250 NCOA1Q15788 1441 aa14.28□□□□□ -0.12
COL9A1-202ENST00000357250 PPP2R1AP30153 589 aa14.28□□□□□ -0.12
COL9A1-202ENST00000357250 TRDNQ13061 729 aa14.27□□□□□ -0.12
COL9A1-202ENST00000357250 CCDC47Q96A33 483 aaKnown RBP14.27□□□□□ -0.12
COL9A1-202ENST00000357250 TSPYL4Q9UJ04 414 aa14.27□□□□□ -0.12
COL9A1-202ENST00000357250 CPLX1O14810 134 aa14.27□□□□□ -0.13
COL9A1-202ENST00000357250 ANKRD20A12PQ8NF67 263 aa14.27□□□□□ -0.13
COL9A1-202ENST00000357250 ANO2Q9NQ90 1003 aa14.27□□□□□ -0.13
COL9A1-202ENST00000357250 GNAI3P08754 354 aa14.26□□□□□ -0.13
COL9A1-202ENST00000357250 SLC4A3P48751 1232 aa14.26□□□□□ -0.13
COL9A1-202ENST00000357250 SLC26A8Q96RN1 970 aa14.26□□□□□ -0.13
COL9A1-202ENST00000357250 EIF2S2P20042 333 aaKnown RBP14.26□□□□□ -0.13
COL9A1-202ENST00000357250 GPS2Q13227 327 aa14.26□□□□□ -0.13
COL9A1-202ENST00000357250 NOL10Q9BSC4 688 aaKnown RBP14.26□□□□□ -0.13
COL9A1-202ENST00000357250 PSME1Q06323 249 aa14.26□□□□□ -0.13
COL9A1-202ENST00000357250 MCM2P49736 904 aa14.25□□□□□ -0.13
COL9A1-202ENST00000357250 EVA1CP58658 441 aa14.25□□□□□ -0.13
COL9A1-202ENST00000357250 FOXD4L5Q5VV16 416 aaPredicted RBP14.25□□□□□ -0.13
COL9A1-202ENST00000357250 CCDC70Q6NSX1 233 aa14.25□□□□□ -0.13
COL9A1-202ENST00000357250 FOXD4L4Q8WXT5 416 aaPredicted RBP14.25□□□□□ -0.13
COL9A1-202ENST00000357250 SMC3Q9UQE7 1217 aa14.25□□□□□ -0.13
COL9A1-202ENST00000357250 HSP90AA2PQ14568 343 aaPredicted RBP14.25□□□□□ -0.13
COL9A1-202ENST00000357250 GAS2L2Q8NHY3 880 aa14.24□□□□□ -0.13
COL9A1-202ENST00000357250 PNISRQ8TF01 805 aaKnown RBP14.24□□□□□ -0.13
COL9A1-202ENST00000357250 IPO7O95373 1038 aaKnown RBP14.23□□□□□ -0.13
COL9A1-202ENST00000357250 MCTP1Q6DN14 999 aa14.23□□□□□ -0.13
COL9A1-202ENST00000357250 RAPGEF4Q8WZA2 1011 aa14.23□□□□□ -0.13
COL9A1-202ENST00000357250 CCDC141Q6ZP82 1450 aa14.23□□□□□ -0.13
COL9A1-202ENST00000357250 TNNT3P45378 269 aaPredicted RBP14.23□□□□□ -0.13
COL9A1-202ENST00000357250 TCP11L2Q8N4U5 519 aa14.23□□□□□ -0.13
COL9A1-202ENST00000357250 A0A0U1RQG5 324 aaPredicted RBP14.23□□□□□ -0.13
COL9A1-202ENST00000357250 PANK1Q8TE04 598 aa14.23□□□□□ -0.13
COL9A1-202ENST00000357250 CABP1Q9NZU7 370 aa14.23□□□□□ -0.13
COL9A1-202ENST00000357250 GCC1Q96CN9 775 aa14.22□□□□□ -0.13
COL9A1-202ENST00000357250 LNPKQ9C0E8 428 aa14.22□□□□□ -0.13
COL9A1-202ENST00000357250 MAP3K1Q13233 1512 aa14.22□□□□□ -0.13
COL9A1-202ENST00000357250 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.22□□□□□ -0.13
COL9A1-202ENST00000357250 ERBINQ96RT1 1412 aa14.22□□□□□ -0.13
COL9A1-202ENST00000357250 PSMA5P28066 241 aa14.22□□□□□ -0.13
COL9A1-202ENST00000357250 FBXO31Q5XUX0 539 aaPredicted RBP14.22□□□□□ -0.13
COL9A1-202ENST00000357250 AKNAQ7Z591 1439 aa14.22□□□□□ -0.13
COL9A1-202ENST00000357250 UBTFL1P0CB47 393 aaPredicted RBP14.22□□□□□ -0.13
COL9A1-202ENST00000357250 MRE11P49959 708 aa14.21□□□□□ -0.13
COL9A1-202ENST00000357250 BICD2Q8TD16 824 aa14.21□□□□□ -0.13
COL9A1-202ENST00000357250 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.21□□□□□ -0.13
COL9A1-202ENST00000357250 HIP1O00291 1037 aa14.21□□□□□ -0.14
COL9A1-202ENST00000357250 CCDC30Q5VVM6 783 aa14.21□□□□□ -0.14
COL9A1-202ENST00000357250 CCDC73Q6ZRK6 1079 aa14.21□□□□□ -0.14
COL9A1-202ENST00000357250 CREBRFQ8IUR6 639 aa14.21□□□□□ -0.14
COL9A1-202ENST00000357250 MBD3O95983 291 aa14.2□□□□□ -0.14
COL9A1-202ENST00000357250 ZNF428Q96B54 188 aa14.2□□□□□ -0.14
COL9A1-202ENST00000357250 RPGRIP1LQ68CZ1 1315 aa14.2□□□□□ -0.14
COL9A1-202ENST00000357250 SAFBQ15424 915 aaKnown RBP eCLIP14.2□□□□□ -0.14
COL9A1-202ENST00000357250 WDR63Q8IWG1 891 aa14.2□□□□□ -0.14
COL9A1-202ENST00000357250 GPATCH8Q9UKJ3 1502 aaKnown RBP14.2□□□□□ -0.14
COL9A1-202ENST00000357250 ADGRF5Q8IZF2 1346 aa14.2□□□□□ -0.14
COL9A1-202ENST00000357250 ERICH2A1L162 156 aa14.19□□□□□ -0.14
COL9A1-202ENST00000357250 LETM1O95202 739 aaPredicted RBP14.19□□□□□ -0.14
COL9A1-202ENST00000357250 SLC52A1Q9NWF4 448 aa14.19□□□□□ -0.14
COL9A1-202ENST00000357250 SASS6Q6UVJ0 657 aa14.19□□□□□ -0.14
COL9A1-202ENST00000357250 CD109Q6YHK3 1445 aa14.19□□□□□ -0.14
COL9A1-202ENST00000357250 CNTROBQ8N137 903 aa14.19□□□□□ -0.14
COL9A1-202ENST00000357250 CLASRPQ8N2M8 674 aaKnown RBP14.19□□□□□ -0.14
COL9A1-202ENST00000357250 NUP153P49790 1475 aaKnown RBP14.19□□□□□ -0.14
COL9A1-202ENST00000357250 PES1O00541 588 aaKnown RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms