RNA–Protein interactions for RNA: ENST00000357235.5

CDC42SE1-201, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42SE1, Length 3,045 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-201ENST00000357235 SAFB2Q14151 953 aaKnown RBP eCLIP10.42□□□□□ -0.74
CDC42SE1-201ENST00000357235 CDC42BPBQ9Y5S2 1711 aa10.42□□□□□ -0.74
CDC42SE1-201ENST00000357235 MTHFSP49914 203 aa10.42□□□□□ -0.74
CDC42SE1-201ENST00000357235 NUTM2DQ5VT03 806 aaPredicted RBP10.42□□□□□ -0.74
CDC42SE1-201ENST00000357235 TMEM132EQ6IEE7 984 aa10.42□□□□□ -0.74
CDC42SE1-201ENST00000357235 RWDD1Q9H446 243 aaPredicted RBP10.42□□□□□ -0.74
CDC42SE1-201ENST00000357235 TPM2P07951 284 aa10.41□□□□□ -0.74
CDC42SE1-201ENST00000357235 TSR2Q969E8 191 aaKnown RBP10.41□□□□□ -0.74
CDC42SE1-201ENST00000357235 RUNDC1Q96C34 613 aa10.41□□□□□ -0.74
CDC42SE1-201ENST00000357235 U2SURPO15042 1029 aaKnown RBP10.41□□□□□ -0.74
CDC42SE1-201ENST00000357235 MYO5CQ9NQX4 1742 aa10.41□□□□□ -0.74
CDC42SE1-201ENST00000357235 TRAPPC8Q9Y2L5 1435 aa10.4□□□□□ -0.74
CDC42SE1-201ENST00000357235 TTC37Q6PGP7 1564 aa10.4□□□□□ -0.74
CDC42SE1-201ENST00000357235 ITPRIPQ8IWB1 547 aa10.4□□□□□ -0.74
CDC42SE1-201ENST00000357235 TBC1D32Q96NH3 1257 aa10.39□□□□□ -0.75
CDC42SE1-201ENST00000357235 PREX2Q70Z35 1606 aa10.39□□□□□ -0.75
CDC42SE1-201ENST00000357235 GOLGA6L3A6NEY3 463 aa10.39□□□□□ -0.75
CDC42SE1-201ENST00000357235 CFAP53Q96M91 514 aa10.39□□□□□ -0.75
CDC42SE1-201ENST00000357235 SMC4Q9NTJ3 1288 aa10.39□□□□□ -0.75
CDC42SE1-201ENST00000357235 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.39□□□□□ -0.754e-7■■□□□ 13.5
CDC42SE1-201ENST00000357235 DUOX2Q9NRD8 1548 aa10.39□□□□□ -0.75
CDC42SE1-201ENST00000357235 XRCC6P12956 609 aaKnown RBP eCLIP10.39□□□□□ -0.75
CDC42SE1-201ENST00000357235 PANK2Q9BZ23 570 aa10.39□□□□□ -0.75
CDC42SE1-201ENST00000357235 NSD3Q9BZ95 1437 aa10.38□□□□□ -0.75
CDC42SE1-201ENST00000357235 C22orf23Q9BZE7 217 aa10.38□□□□□ -0.75
CDC42SE1-201ENST00000357235 KANK1Q14678 1352 aa10.38□□□□□ -0.75
CDC42SE1-201ENST00000357235 UNC13BO14795 1591 aa10.38□□□□□ -0.75
CDC42SE1-201ENST00000357235 MAST1Q9Y2H9 1570 aa10.38□□□□□ -0.75
CDC42SE1-201ENST00000357235 DZIP1LQ8IYY4 767 aaKnown RBP10.37□□□□□ -0.75
CDC42SE1-201ENST00000357235 MYH16Q9H6N6 1097 aa10.37□□□□□ -0.75
CDC42SE1-201ENST00000357235 ANTXR1Q9H6X2 564 aa10.37□□□□□ -0.75
CDC42SE1-201ENST00000357235 FOXD4L1Q9NU39 408 aa10.37□□□□□ -0.75
CDC42SE1-201ENST00000357235 IQGAP3Q86VI3 1631 aa10.37□□□□□ -0.75
CDC42SE1-201ENST00000357235 ZKSCAN2Q63HK3 967 aa10.36□□□□□ -0.75
CDC42SE1-201ENST00000357235 NGEFQ8N5V2 710 aa10.36□□□□□ -0.75
CDC42SE1-201ENST00000357235 SYNMO15061 1565 aa10.36□□□□□ -0.75
CDC42SE1-201ENST00000357235 LAMC1P11047 1609 aa10.36□□□□□ -0.75
CDC42SE1-201ENST00000357235 NPC1L1Q9UHC9 1359 aa10.36□□□□□ -0.75
CDC42SE1-201ENST00000357235 ESPNB1AK53 854 aa10.36□□□□□ -0.75
CDC42SE1-201ENST00000357235 MCM4P33991 863 aa10.36□□□□□ -0.75
CDC42SE1-201ENST00000357235 MVPQ14764 893 aaKnown RBP10.36□□□□□ -0.75
CDC42SE1-201ENST00000357235 ATP10AO60312 1499 aa10.35□□□□□ -0.75
CDC42SE1-201ENST00000357235 EXOSC9Q06265 439 aaKnown RBP10.35□□□□□ -0.75
CDC42SE1-201ENST00000357235 HSCBQ8IWL3 235 aa10.35□□□□□ -0.75
CDC42SE1-201ENST00000357235 ABCC2Q92887 1545 aa10.35□□□□□ -0.75
CDC42SE1-201ENST00000357235 MADDQ8WXG6 1647 aa10.34□□□□□ -0.75
CDC42SE1-201ENST00000357235 TRAK2O60296 914 aa10.34□□□□□ -0.75
CDC42SE1-201ENST00000357235 GGT6Q6P531 493 aa10.34□□□□□ -0.75
CDC42SE1-201ENST00000357235 BBXQ8WY36 941 aaPredicted RBP10.34□□□□□ -0.75
CDC42SE1-201ENST00000357235 STAC3Q96MF2 364 aa10.34□□□□□ -0.75
CDC42SE1-201ENST00000357235 NINLQ9Y2I6 1382 aa10.34□□□□□ -0.75
CDC42SE1-201ENST00000357235 ERVK-7P63135 1459 aa10.34□□□□□ -0.75
CDC42SE1-201ENST00000357235 LNPKQ9C0E8 428 aa10.34□□□□□ -0.75
CDC42SE1-201ENST00000357235 POLR3AO14802 1390 aaPredicted RBP10.34□□□□□ -0.75
CDC42SE1-201ENST00000357235 UGGT1Q9NYU2 1555 aa10.34□□□□□ -0.75
CDC42SE1-201ENST00000357235 WDR63Q8IWG1 891 aa10.33□□□□□ -0.75
CDC42SE1-201ENST00000357235 PLCH2O75038 1416 aa10.33□□□□□ -0.76
CDC42SE1-201ENST00000357235 TRIM27P14373 513 aa10.33□□□□□ -0.76
CDC42SE1-201ENST00000357235 CABP2Q9NPB3 220 aa10.33□□□□□ -0.76
CDC42SE1-201ENST00000357235 CHMP5Q9NZZ3 219 aa10.33□□□□□ -0.76
CDC42SE1-201ENST00000357235 STK26Q9P289 416 aa10.33□□□□□ -0.76
CDC42SE1-201ENST00000357235 SCAPERQ9BY12 1400 aa10.33□□□□□ -0.76
CDC42SE1-201ENST00000357235 FAM69CQ0P6D2 419 aa10.33□□□□□ -0.76
CDC42SE1-201ENST00000357235 SSH1Q8WYL5 1049 aa10.32□□□□□ -0.76
CDC42SE1-201ENST00000357235 GGNBP2Q9H3C7 697 aa10.32□□□□□ -0.76
CDC42SE1-201ENST00000357235 RNF17Q9BXT8 1623 aaKnown RBP10.32□□□□□ -0.76
CDC42SE1-201ENST00000357235 NOB1Q9ULX3 412 aaKnown RBP10.32□□□□□ -0.76
CDC42SE1-201ENST00000357235 FSD2A1L4K1 749 aa10.31□□□□□ -0.76
CDC42SE1-201ENST00000357235 HSP90AB1P08238 724 aaKnown RBP10.31□□□□□ -0.76
CDC42SE1-201ENST00000357235 SRPK2P78362 688 aaKnown RBP10.31□□□□□ -0.76
CDC42SE1-201ENST00000357235 TRIM44Q96DX7 344 aaPredicted RBP10.31□□□□□ -0.76
CDC42SE1-201ENST00000357235 MAP7D2Q96T17 732 aa10.31□□□□□ -0.76
CDC42SE1-201ENST00000357235 NLRP1Q9C000 1473 aa10.31□□□□□ -0.76
CDC42SE1-201ENST00000357235 KIAA1211Q6ZU35 1233 aa10.31□□□□□ -0.76
CDC42SE1-201ENST00000357235 TMEM57Q8N5G2 664 aa10.31□□□□□ -0.76
CDC42SE1-201ENST00000357235 PLXNC1O60486 1568 aa10.3□□□□□ -0.76
CDC42SE1-201ENST00000357235 KDM5AP29375 1690 aaKnown RBP10.3□□□□□ -0.76
CDC42SE1-201ENST00000357235 IQGAP1P46940 1657 aa10.3□□□□□ -0.76
CDC42SE1-201ENST00000357235 CLTCL1P53675 1640 aa10.3□□□□□ -0.76
CDC42SE1-201ENST00000357235 ELL2O00472 640 aaPredicted RBP10.3□□□□□ -0.76
CDC42SE1-201ENST00000357235 MRE11P49959 708 aa10.3□□□□□ -0.76
CDC42SE1-201ENST00000357235 TAF7LQ5H9L4 462 aa10.3□□□□□ -0.76
CDC42SE1-201ENST00000357235 NAP1L2Q9ULW6 460 aaPredicted RBP10.3□□□□□ -0.76
CDC42SE1-201ENST00000357235 DDX19BQ9UMR2 479 aa10.3□□□□□ -0.76
CDC42SE1-201ENST00000357235 NOS1P29475 1434 aa10.3□□□□□ -0.76
CDC42SE1-201ENST00000357235 ATF7IPQ6VMQ6 1270 aa10.29□□□□□ -0.76
CDC42SE1-201ENST00000357235 SMAP1Q8IYB5 467 aaPredicted RBP10.29□□□□□ -0.76
CDC42SE1-201ENST00000357235 C1orf115Q9H7X2 142 aa10.29□□□□□ -0.76
CDC42SE1-201ENST00000357235 NCLP19338 710 aaKnown RBP10.29□□□□□ -0.76
CDC42SE1-201ENST00000357235 RIPK4P57078 832 aa10.29□□□□□ -0.76
CDC42SE1-201ENST00000357235 TRPM2O94759 1503 aa10.29□□□□□ -0.76
CDC42SE1-201ENST00000357235 PTPRTO14522 1441 aa10.28□□□□□ -0.76
CDC42SE1-201ENST00000357235 ZHX1Q9UKY1 873 aaPredicted RBP10.28□□□□□ -0.76
CDC42SE1-201ENST00000357235 MYOM1P52179 1685 aa10.28□□□□□ -0.76
CDC42SE1-201ENST00000357235 ERBB4Q15303 1308 aa10.28□□□□□ -0.76
CDC42SE1-201ENST00000357235 TMPOP42166 694 aaKnown RBP10.28□□□□□ -0.76
CDC42SE1-201ENST00000357235 ANKRD45Q5TZF3 282 aa10.28□□□□□ -0.76
CDC42SE1-201ENST00000357235 GRPEL1Q9HAV7 217 aa10.27□□□□□ -0.77
CDC42SE1-201ENST00000357235 DDX11L8A8MPP1 907 aa10.26□□□□□ -0.77
CDC42SE1-201ENST00000357235 FBLN1P23142 703 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms