RNA–Protein interactions for RNA: ENST00000349748.7

CAPN3-203, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 2,955 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-203ENST00000349748 RGS22Q8NE09 1264 aa13.31□□□□□ -0.28
CAPN3-203ENST00000349748 TSPY4P0CV99 314 aa13.3□□□□□ -0.28
CAPN3-203ENST00000349748 TSPY10P0CW01 314 aa13.3□□□□□ -0.28
CAPN3-203ENST00000349748 HS1BP3Q53T59 392 aa13.3□□□□□ -0.28
CAPN3-203ENST00000349748 ZBTB9Q96C00 473 aa13.3□□□□□ -0.28
CAPN3-203ENST00000349748 ARHGAP5Q13017 1502 aa13.3□□□□□ -0.28
CAPN3-203ENST00000349748 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.3□□□□□ -0.28
CAPN3-203ENST00000349748 PZPP20742 1482 aa13.3□□□□□ -0.28
CAPN3-203ENST00000349748 MYRIPQ8NFW9 859 aa13.29□□□□□ -0.28
CAPN3-203ENST00000349748 CHRM1P11229 460 aaPredicted RBP13.29□□□□□ -0.28
CAPN3-203ENST00000349748 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.29□□□□□ -0.28
CAPN3-203ENST00000349748 SKOR2Q2VWA4 1001 aaPredicted RBP13.29□□□□□ -0.28
CAPN3-203ENST00000349748 DUSP27Q5VZP5 1158 aa13.29□□□□□ -0.28
CAPN3-203ENST00000349748 GBP4Q96PP9 640 aa13.29□□□□□ -0.28
CAPN3-203ENST00000349748 BRD2P25440 801 aaKnown RBP13.28□□□□□ -0.28
CAPN3-203ENST00000349748 MFAP1P55081 439 aaKnown RBP13.28□□□□□ -0.28
CAPN3-203ENST00000349748 FOXD4L1Q9NU39 408 aa13.28□□□□□ -0.28
CAPN3-203ENST00000349748 TTC37Q6PGP7 1564 aa13.28□□□□□ -0.28
CAPN3-203ENST00000349748 CAMSAP2Q08AD1 1489 aa13.28□□□□□ -0.28
CAPN3-203ENST00000349748 HSCBQ8IWL3 235 aa13.28□□□□□ -0.28
CAPN3-203ENST00000349748 C22orf23Q9BZE7 217 aa13.28□□□□□ -0.28
CAPN3-203ENST00000349748 VIRMAQ69YN4 1812 aaKnown RBP13.28□□□□□ -0.28
CAPN3-203ENST00000349748 AFAP1Q8N556 730 aa13.27□□□□□ -0.28
CAPN3-203ENST00000349748 RBSNQ9H1K0 784 aa13.27□□□□□ -0.29
CAPN3-203ENST00000349748 MBD5Q9P267 1494 aa13.27□□□□□ -0.29
CAPN3-203ENST00000349748 BCAR3O75815 825 aa13.26□□□□□ -0.29
CAPN3-203ENST00000349748 U2AF2P26368 475 aaKnown RBP eCLIP13.26□□□□□ -0.29
CAPN3-203ENST00000349748 DDIT3P35638 169 aa13.26□□□□□ -0.29
CAPN3-203ENST00000349748 PDLIM2Q96JY6 352 aa13.26□□□□□ -0.29
CAPN3-203ENST00000349748 DDX49Q9Y6V7 483 aaKnown RBP13.26□□□□□ -0.29
CAPN3-203ENST00000349748 ROCK2O75116 1388 aaKnown RBP13.26□□□□□ -0.29
CAPN3-203ENST00000349748 CHMP4CQ96CF2 233 aa13.26□□□□□ -0.29
CAPN3-203ENST00000349748 EIF3AQ14152 1382 aaKnown RBP13.25□□□□□ -0.29
CAPN3-203ENST00000349748 PLCH2O75038 1416 aa13.24□□□□□ -0.29
CAPN3-203ENST00000349748 CD109Q6YHK3 1445 aa13.24□□□□□ -0.29
CAPN3-203ENST00000349748 RAB3GAP1Q15042 981 aa13.23□□□□□ -0.29
CAPN3-203ENST00000349748 MPNDQ8N594 471 aa13.23□□□□□ -0.29
CAPN3-203ENST00000349748 PDCL2Q8N4E4 241 aa13.23□□□□□ -0.29
CAPN3-203ENST00000349748 RTEL1-TNFRSF6BF6WH68 1400 aa13.23□□□□□ -0.29
CAPN3-203ENST00000349748 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.22□□□□□ -0.29
CAPN3-203ENST00000349748 NBPF1Q3BBV0 1214 aa13.22□□□□□ -0.29
CAPN3-203ENST00000349748 PLEKHH1Q9ULM0 1364 aa13.22□□□□□ -0.29
CAPN3-203ENST00000349748 CAVIN1Q6NZI2 390 aaKnown RBP13.22□□□□□ -0.29
CAPN3-203ENST00000349748 BCL2L12Q9HB09 334 aa13.22□□□□□ -0.29
CAPN3-203ENST00000349748 CDC42BPAQ5VT25 1732 aa13.22□□□□□ -0.29
CAPN3-203ENST00000349748 KDM5CP41229 1560 aa13.21□□□□□ -0.29
CAPN3-203ENST00000349748 CC2D1BQ5T0F9 858 aaKnown RBP13.21□□□□□ -0.29
CAPN3-203ENST00000349748 DNAJC2Q99543 621 aaKnown RBP13.21□□□□□ -0.29
CAPN3-203ENST00000349748 COG6Q9Y2V7 657 aa13.21□□□□□ -0.29
CAPN3-203ENST00000349748 SSFA2P28290 1259 aa13.21□□□□□ -0.29
CAPN3-203ENST00000349748 MCM5P33992 734 aa13.21□□□□□ -0.29
CAPN3-203ENST00000349748 PRIM1P49642 420 aaKnown RBP13.21□□□□□ -0.29
CAPN3-203ENST00000349748 PKD2Q13563 968 aa13.21□□□□□ -0.29
CAPN3-203ENST00000349748 BLMP54132 1417 aaPredicted RBP13.21□□□□□ -0.3
CAPN3-203ENST00000349748 RAPGEF3O95398 923 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 KLHL40Q2TBA0 621 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 PANK1Q8TE04 598 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 CLUAP1Q96AJ1 413 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 KIAA1107Q9UPP5 1409 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 ZSCAN23Q3MJ62 389 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 ADAMTS8Q9UP79 889 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 PDZRN3Q9UPQ7 1066 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 KIF3AQ9Y496 699 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 FANCAO15360 1455 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 TRIM6-TRIM34B2RNG4 842 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 HSP90AB1P08238 724 aaKnown RBP13.2□□□□□ -0.3
CAPN3-203ENST00000349748 TRIM34Q9BYJ4 488 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 CCDC39Q9UFE4 941 aa13.2□□□□□ -0.3
CAPN3-203ENST00000349748 ITSN2Q9NZM3 1697 aa13.19□□□□□ -0.3
CAPN3-203ENST00000349748 CAPN2P17655 700 aa13.19□□□□□ -0.3
CAPN3-203ENST00000349748 KIAA2012Q0VF49 1180 aa13.19□□□□□ -0.3
CAPN3-203ENST00000349748 C17orf53Q8N3J3 647 aaPredicted RBP13.19□□□□□ -0.3
CAPN3-203ENST00000349748 VGFO15240 615 aaPredicted RBP13.19□□□□□ -0.3
CAPN3-203ENST00000349748 NGEFQ8N5V2 710 aa13.19□□□□□ -0.3
CAPN3-203ENST00000349748 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.19□□□□□ -0.3
CAPN3-203ENST00000349748 RNF216Q9NWF9 866 aaPredicted RBP13.19□□□□□ -0.3
CAPN3-203ENST00000349748 NCOA3Q9Y6Q9 1424 aa13.19□□□□□ -0.3
CAPN3-203ENST00000349748 SYCP2Q9BX26 1530 aa13.19□□□□□ -0.3
CAPN3-203ENST00000349748 SCAPERQ9BY12 1400 aa13.18□□□□□ -0.3
CAPN3-203ENST00000349748 ZMYM4Q5VZL5 1548 aa13.18□□□□□ -0.3
CAPN3-203ENST00000349748 PARD3Q8TEW0 1356 aa13.18□□□□□ -0.3
CAPN3-203ENST00000349748 TSPOAP1O95153 1857 aa13.18□□□□□ -0.3
CAPN3-203ENST00000349748 TRAPPC8Q9Y2L5 1435 aa13.18□□□□□ -0.3
CAPN3-203ENST00000349748 ZNF445P59923 1031 aa13.18□□□□□ -0.3
CAPN3-203ENST00000349748 GOLGA2Q08379 1002 aa13.18□□□□□ -0.3
CAPN3-203ENST00000349748 TRERF1Q96PN7 1200 aa13.18□□□□□ -0.3
CAPN3-203ENST00000349748 SPAG9O60271 1321 aaKnown RBP13.18□□□□□ -0.3
CAPN3-203ENST00000349748 GTF2F1P35269 517 aaKnown RBP eCLIP13.17□□□□□ -0.3
CAPN3-203ENST00000349748 SMC5Q8IY18 1101 aa13.17□□□□□ -0.3
CAPN3-203ENST00000349748 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.17□□□□□ -0.3
CAPN3-203ENST00000349748 SAMD9LQ8IVG5 1584 aa13.17□□□□□ -0.3
CAPN3-203ENST00000349748 C9orf84Q5VXU9 1444 aa13.17□□□□□ -0.3
CAPN3-203ENST00000349748 ST20-MTHFSA0A0A6YYL1 179 aa13.17□□□□□ -0.3
CAPN3-203ENST00000349748 PTMAP06454 111 aaKnown RBP13.17□□□□□ -0.3
CAPN3-203ENST00000349748 SLC20A2Q08357 652 aa13.17□□□□□ -0.3
CAPN3-203ENST00000349748 PRIMPOLQ96LW4 560 aa13.17□□□□□ -0.3
CAPN3-203ENST00000349748 SPINK5Q9NQ38 1064 aaPredicted RBP13.17□□□□□ -0.3
CAPN3-203ENST00000349748 IBTKQ9P2D0 1353 aaPredicted RBP13.17□□□□□ -0.3
CAPN3-203ENST00000349748 CDC42BPBQ9Y5S2 1711 aa13.17□□□□□ -0.3
CAPN3-203ENST00000349748 ARHGEF12Q9NZN5 1544 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms