RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TPM2P07951 284 aa8.59□□□□□ -1.03
VPS39-202ENST00000348544 AAMPQ13685 434 aa8.58□□□□□ -1.04
VPS39-202ENST00000348544 NGEFQ8N5V2 710 aa8.58□□□□□ -1.04
VPS39-202ENST00000348544 TNPO1Q92973 898 aaKnown RBP8.58□□□□□ -1.04
VPS39-202ENST00000348544 PDCL3Q9H2J4 239 aa8.58□□□□□ -1.04
VPS39-202ENST00000348544 RWDD1Q9H446 243 aaPredicted RBP8.58□□□□□ -1.04
VPS39-202ENST00000348544 RRP7AQ9Y3A4 280 aaKnown RBP8.58□□□□□ -1.04
VPS39-202ENST00000348544 CEP152O94986 1710 aa8.58□□□□□ -1.04
VPS39-202ENST00000348544 CDC42BPBQ9Y5S2 1711 aa8.58□□□□□ -1.04
VPS39-202ENST00000348544 SCAF11Q99590 1463 aaKnown RBP8.58□□□□□ -1.04
VPS39-202ENST00000348544 SHPRHQ149N8 1683 aa8.58□□□□□ -1.04
VPS39-202ENST00000348544 KIAA1211Q6ZU35 1233 aa8.57□□□□□ -1.04
VPS39-202ENST00000348544 TRIM44Q96DX7 344 aaPredicted RBP8.57□□□□□ -1.04
VPS39-202ENST00000348544 CARD14Q9BXL6 1004 aa8.57□□□□□ -1.04
VPS39-202ENST00000348544 IQSEC2Q5JU85 1478 aa8.57□□□□□ -1.04
VPS39-202ENST00000348544 SCAPERQ9BY12 1400 aa8.57□□□□□ -1.04
VPS39-202ENST00000348544 NEUROD2Q15784 382 aa8.57□□□□□ -1.04
VPS39-202ENST00000348544 HSCBQ8IWL3 235 aa8.57□□□□□ -1.04
VPS39-202ENST00000348544 CDCA8Q53HL2 280 aa8.57□□□□□ -1.04
VPS39-202ENST00000348544 SHROOM2Q13796 1616 aa8.56□□□□□ -1.04
VPS39-202ENST00000348544 SYCP2Q9BX26 1530 aa8.56□□□□□ -1.04
VPS39-202ENST00000348544 KDM5AP29375 1690 aaKnown RBP8.56□□□□□ -1.04
VPS39-202ENST00000348544 RIPK4P57078 832 aa8.56□□□□□ -1.04
VPS39-202ENST00000348544 PREX2Q70Z35 1606 aa8.56□□□□□ -1.04
VPS39-202ENST00000348544 POLR3AO14802 1390 aaPredicted RBP8.56□□□□□ -1.04
VPS39-202ENST00000348544 MVPQ14764 893 aaKnown RBP8.56□□□□□ -1.04
VPS39-202ENST00000348544 SMC5Q8IY18 1101 aa8.56□□□□□ -1.04
VPS39-202ENST00000348544 MAST1Q9Y2H9 1570 aa8.55□□□□□ -1.04
VPS39-202ENST00000348544 PPP1R9BQ96SB3 815 aa8.55□□□□□ -1.04
VPS39-202ENST00000348544 SPHKAPQ2M3C7 1700 aa8.55□□□□□ -1.04
VPS39-202ENST00000348544 RAB3GAP1Q15042 981 aa8.55□□□□□ -1.04
VPS39-202ENST00000348544 MRC2Q9UBG0 1479 aa8.55□□□□□ -1.04
VPS39-202ENST00000348544 RBM25P49756 843 aaKnown RBP8.54□□□□□ -1.04
VPS39-202ENST00000348544 TCP11L2Q8N4U5 519 aa8.54□□□□□ -1.04
VPS39-202ENST00000348544 SNX21Q969T3 373 aa8.54□□□□□ -1.04
VPS39-202ENST00000348544 PRDM4Q9UKN5 801 aa8.54□□□□□ -1.04
VPS39-202ENST00000348544 ERVK-7P63135 1459 aa8.54□□□□□ -1.04
VPS39-202ENST00000348544 IFT140Q96RY7 1462 aa8.54□□□□□ -1.04
VPS39-202ENST00000348544 DUOX2Q9NRD8 1548 aa8.54□□□□□ -1.04
VPS39-202ENST00000348544 TTC37Q6PGP7 1564 aa8.54□□□□□ -1.04
VPS39-202ENST00000348544 CARMIL2Q6F5E8 1435 aa8.54□□□□□ -1.04
VPS39-202ENST00000348544 OFD1O75665 1012 aa8.54□□□□□ -1.04
VPS39-202ENST00000348544 CD2BP2O95400 341 aaKnown RBP8.53□□□□□ -1.04
VPS39-202ENST00000348544 CALD1Q05682 793 aaKnown RBP8.53□□□□□ -1.04
VPS39-202ENST00000348544 CCDC173Q0VFZ6 552 aa8.53□□□□□ -1.04
VPS39-202ENST00000348544 ZSCAN30Q86W11 494 aa8.53□□□□□ -1.04
VPS39-202ENST00000348544 CIZ1Q9ULV3 898 aaPredicted RBP8.53□□□□□ -1.04
VPS39-202ENST00000348544 RBM10P98175 930 aaKnown RBP8.53□□□□□ -1.04
VPS39-202ENST00000348544 RUNDC1Q96C34 613 aa8.53□□□□□ -1.04
VPS39-202ENST00000348544 GBP4Q96PP9 640 aa8.53□□□□□ -1.04
VPS39-202ENST00000348544 KIF2CQ99661 725 aa8.53□□□□□ -1.04
VPS39-202ENST00000348544 HDAC1Q13547 482 aaPredicted RBP8.52□□□□□ -1.05
VPS39-202ENST00000348544 RSPH4AQ5TD94 716 aa8.52□□□□□ -1.05
VPS39-202ENST00000348544 WDR63Q8IWG1 891 aa8.52□□□□□ -1.05
VPS39-202ENST00000348544 KANK1Q14678 1352 aa8.52□□□□□ -1.05
VPS39-202ENST00000348544 NASPP49321 788 aaPredicted RBP8.52□□□□□ -1.05
VPS39-202ENST00000348544 SKOR2Q2VWA4 1001 aaPredicted RBP8.52□□□□□ -1.05
VPS39-202ENST00000348544 DZIP1LQ8IYY4 767 aaKnown RBP8.52□□□□□ -1.05
VPS39-202ENST00000348544 JPH4Q96JJ6 628 aa8.52□□□□□ -1.05
VPS39-202ENST00000348544 FOXD4L1Q9NU39 408 aa8.52□□□□□ -1.05
VPS39-202ENST00000348544 HSP90AB1P08238 724 aaKnown RBP8.51□□□□□ -1.05
VPS39-202ENST00000348544 SSFA2P28290 1259 aa8.51□□□□□ -1.05
VPS39-202ENST00000348544 ZKSCAN2Q63HK3 967 aa8.51□□□□□ -1.05
VPS39-202ENST00000348544 FTSJ3Q8IY81 847 aaKnown RBP8.5□□□□□ -1.05
VPS39-202ENST00000348544 CLTCL1P53675 1640 aa8.5□□□□□ -1.05
VPS39-202ENST00000348544 TRIM27P14373 513 aa8.5□□□□□ -1.05
VPS39-202ENST00000348544 TNNT2P45379 298 aaPredicted RBP8.5□□□□□ -1.05
VPS39-202ENST00000348544 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.5□□□□□ -1.05
VPS39-202ENST00000348544 TRPM2O94759 1503 aa8.5□□□□□ -1.05
VPS39-202ENST00000348544 IBTKQ9P2D0 1353 aaPredicted RBP8.49□□□□□ -1.05
VPS39-202ENST00000348544 TERF1P54274 439 aa8.49□□□□□ -1.05
VPS39-202ENST00000348544 CCDC27Q2M243 656 aa8.49□□□□□ -1.05
VPS39-202ENST00000348544 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.49□□□□□ -1.05
VPS39-202ENST00000348544 GAS2L2Q8NHY3 880 aa8.49□□□□□ -1.05
VPS39-202ENST00000348544 TSR2Q969E8 191 aaKnown RBP8.49□□□□□ -1.05
VPS39-202ENST00000348544 RBM42Q9BTD8 480 aaKnown RBP8.49□□□□□ -1.05
VPS39-202ENST00000348544 ARHGAP5Q13017 1502 aa8.49□□□□□ -1.05
VPS39-202ENST00000348544 KLHL40Q2TBA0 621 aa8.48□□□□□ -1.05
VPS39-202ENST00000348544 CHMP7Q8WUX9 453 aaPredicted RBP8.48□□□□□ -1.05
VPS39-202ENST00000348544 R3HCC1Q9Y3T6 440 aaKnown RBP8.48□□□□□ -1.05
VPS39-202ENST00000348544 KIAA1210Q9ULL0 1709 aa8.48□□□□□ -1.05
VPS39-202ENST00000348544 ZBTB22O15209 634 aa8.48□□□□□ -1.05
VPS39-202ENST00000348544 PTMSP20962 102 aa8.48□□□□□ -1.05
VPS39-202ENST00000348544 MSNP26038 577 aaKnown RBP8.48□□□□□ -1.05
VPS39-202ENST00000348544 CLEC17AQ6ZS10 378 aa8.48□□□□□ -1.05
VPS39-202ENST00000348544 ITPRIPQ8IWB1 547 aa8.48□□□□□ -1.05
VPS39-202ENST00000348544 FAM13BQ9NYF5 915 aa8.48□□□□□ -1.05
VPS39-202ENST00000348544 ARHGAP31Q2M1Z3 1444 aa8.48□□□□□ -1.05
VPS39-202ENST00000348544 NSD3Q9BZ95 1437 aa8.48□□□□□ -1.05
VPS39-202ENST00000348544 ZNF518AQ6AHZ1 1483 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 K7ELQ4 463 aaPredicted RBP8.47□□□□□ -1.05
VPS39-202ENST00000348544 BAG4O95429 457 aaKnown RBP8.47□□□□□ -1.05
VPS39-202ENST00000348544 NUCB1Q02818 461 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 MORC1Q86VD1 984 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 LNPKQ9C0E8 428 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 CFAP70Q5T0N1 1121 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 SSH1Q8WYL5 1049 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 SMC4Q9NTJ3 1288 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 ZBTB40Q9NUA8 1239 aa8.47□□□□□ -1.05
VPS39-202ENST00000348544 PODXL2Q9NZ53 605 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms