RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 R3HCC1Q9Y3T6 440 aaKnown RBP15.92■□□□□ 0.14
COL6A3-202ENST00000347401 TRIM5Q9C035 493 aa15.92■□□□□ 0.14
COL6A3-202ENST00000347401 CALCOCO1Q9P1Z2 691 aa15.92■□□□□ 0.14
COL6A3-202ENST00000347401 TXLNAP40222 546 aa15.91■□□□□ 0.14
COL6A3-202ENST00000347401 CBFA2T2O43439 604 aa15.91■□□□□ 0.14
COL6A3-202ENST00000347401 OFD1O75665 1012 aa15.91■□□□□ 0.14
COL6A3-202ENST00000347401 EZRP15311 586 aaKnown RBP15.91■□□□□ 0.14
COL6A3-202ENST00000347401 MAP9Q49MG5 647 aa15.91■□□□□ 0.14
COL6A3-202ENST00000347401 CCDC112Q8NEF3 446 aa15.9■□□□□ 0.14
COL6A3-202ENST00000347401 SOGA1O94964 1423 aa15.9■□□□□ 0.14
COL6A3-202ENST00000347401 DHX57Q6P158 1386 aaKnown RBP15.9■□□□□ 0.14
COL6A3-202ENST00000347401 AEBP1Q8IUX7 1158 aa15.9■□□□□ 0.14
COL6A3-202ENST00000347401 POLR3GO15318 223 aaPredicted RBP15.9■□□□□ 0.14
COL6A3-202ENST00000347401 NAP1L1P55209 391 aaKnown RBP15.9■□□□□ 0.14
COL6A3-202ENST00000347401 SDF4Q9BRK5 362 aa15.9■□□□□ 0.14
COL6A3-202ENST00000347401 ANO2Q9NQ90 1003 aa15.9■□□□□ 0.14
COL6A3-202ENST00000347401 IFIT2P09913 472 aaKnown RBP15.89■□□□□ 0.13
COL6A3-202ENST00000347401 SENP3-EIF4A1A0A087X0R7 540 aa15.89■□□□□ 0.13
COL6A3-202ENST00000347401 FOXD4L1Q9NU39 408 aa15.89■□□□□ 0.13
COL6A3-202ENST00000347401 CLUAP1Q96AJ1 413 aa15.89■□□□□ 0.13
COL6A3-202ENST00000347401 CRBNQ96SW2 442 aa15.89■□□□□ 0.13
COL6A3-202ENST00000347401 EFCAB2Q5VUJ9 269 aa15.89■□□□□ 0.13
COL6A3-202ENST00000347401 AXDND1Q5T1B0 1012 aaPredicted RBP15.89■□□□□ 0.13
COL6A3-202ENST00000347401 L3MBTL2Q969R5 705 aa15.88■□□□□ 0.13
COL6A3-202ENST00000347401 VPS53Q5VIR6 699 aa15.88■□□□□ 0.13
COL6A3-202ENST00000347401 GOLGA6L10A0A0M3HER8 536 aa15.88■□□□□ 0.13
COL6A3-202ENST00000347401 C9orf78Q9NZ63 289 aaPredicted RBP15.88■□□□□ 0.13
COL6A3-202ENST00000347401 NOL8Q76FK4 1167 aaKnown RBP15.88■□□□□ 0.13
COL6A3-202ENST00000347401 PLEKHG5O94827 1062 aa15.88■□□□□ 0.13
COL6A3-202ENST00000347401 MCM5P33992 734 aa15.88■□□□□ 0.13
COL6A3-202ENST00000347401 PODXL2Q9NZ53 605 aa15.88■□□□□ 0.13
COL6A3-202ENST00000347401 TOMM22Q9NS69 142 aa15.88■□□□□ 0.13
COL6A3-202ENST00000347401 STIM1Q13586 685 aa15.87■□□□□ 0.13
COL6A3-202ENST00000347401 CCDC88BA6NC98 1476 aa15.87■□□□□ 0.13
COL6A3-202ENST00000347401 RALYLQ86SE5 291 aaKnown RBP15.87■□□□□ 0.13
COL6A3-202ENST00000347401 SART3Q15020 963 aaKnown RBP15.86■□□□□ 0.13
COL6A3-202ENST00000347401 FRAT2O75474 233 aaPredicted RBP15.86■□□□□ 0.13
COL6A3-202ENST00000347401 CNTROBQ8N137 903 aa15.86■□□□□ 0.13
COL6A3-202ENST00000347401 RUNDC1Q96C34 613 aa15.86■□□□□ 0.13
COL6A3-202ENST00000347401 MAGEC2Q9UBF1 373 aaPredicted RBP15.86■□□□□ 0.13
COL6A3-202ENST00000347401 PDS5BQ9NTI5 1447 aa15.86■□□□□ 0.13
COL6A3-202ENST00000347401 WDR33Q9C0J8 1336 aaKnown RBP15.86■□□□□ 0.13
COL6A3-202ENST00000347401 CCDC43Q96MW1 224 aaKnown RBP15.86■□□□□ 0.13
COL6A3-202ENST00000347401 HSP90AB2PQ58FF8 381 aa15.85■□□□□ 0.13
COL6A3-202ENST00000347401 PDCL3Q9H2J4 239 aa15.85■□□□□ 0.13
COL6A3-202ENST00000347401 PLEKHH1Q9ULM0 1364 aa15.85■□□□□ 0.13
COL6A3-202ENST00000347401 VPS37CA5D8V6 355 aaPredicted RBP15.85■□□□□ 0.13
COL6A3-202ENST00000347401 PDE3AQ14432 1141 aa15.85■□□□□ 0.13
COL6A3-202ENST00000347401 AMPHP49418 695 aa15.85■□□□□ 0.13
COL6A3-202ENST00000347401 G3V3G9 751 aa15.85■□□□□ 0.13
COL6A3-202ENST00000347401 DCAF8Q5TAQ9 597 aa15.85■□□□□ 0.13
COL6A3-202ENST00000347401 SLC26A8Q96RN1 970 aa15.84■□□□□ 0.13
COL6A3-202ENST00000347401 GNAI1P63096 354 aa15.84■□□□□ 0.13
COL6A3-202ENST00000347401 HSP90AB3PQ58FF7 597 aa15.84■□□□□ 0.13
COL6A3-202ENST00000347401 RRBP1Q9P2E9 1410 aaKnown RBP15.84■□□□□ 0.13
COL6A3-202ENST00000347401 SMARCA4P51532 1647 aa15.84■□□□□ 0.13
COL6A3-202ENST00000347401 SEPT7Q16181 437 aaKnown RBP15.83■□□□□ 0.13
COL6A3-202ENST00000347401 CFAP45Q9UL16 551 aa15.83■□□□□ 0.13
COL6A3-202ENST00000347401 POLA1P09884 1462 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-202ENST00000347401 FOXD4L5Q5VV16 416 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-202ENST00000347401 MICALCLQ6ZW33 695 aa15.83■□□□□ 0.12
COL6A3-202ENST00000347401 FOXD4L4Q8WXT5 416 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-202ENST00000347401 C1orf141Q5JVX7 400 aa15.83■□□□□ 0.12
COL6A3-202ENST00000347401 ESPNB1AK53 854 aa15.83■□□□□ 0.12
COL6A3-202ENST00000347401 CAVIN2O95810 425 aa15.83■□□□□ 0.12
COL6A3-202ENST00000347401 G3BP1Q13283 466 aaKnown RBP eCLIP15.83■□□□□ 0.12
COL6A3-202ENST00000347401 LUZP1Q86V48 1076 aa15.82■□□□□ 0.12
COL6A3-202ENST00000347401 GCC1Q96CN9 775 aa15.82■□□□□ 0.12
COL6A3-202ENST00000347401 EID1Q9Y6B2 187 aa15.82■□□□□ 0.12
COL6A3-202ENST00000347401 LRRCC1Q9C099 1032 aa15.82■□□□□ 0.12
COL6A3-202ENST00000347401 ZSCAN30Q86W11 494 aa15.82■□□□□ 0.12
COL6A3-202ENST00000347401 MYOM3Q5VTT5 1437 aa15.82■□□□□ 0.12
COL6A3-202ENST00000347401 EXOC6Q8TAG9 804 aa15.81■□□□□ 0.12
COL6A3-202ENST00000347401 GBP2P32456 591 aaPredicted RBP15.81■□□□□ 0.12
COL6A3-202ENST00000347401 ERC1Q8IUD2 1116 aa15.81■□□□□ 0.12
COL6A3-202ENST00000347401 GRPEL1Q9HAV7 217 aa15.81■□□□□ 0.12
COL6A3-202ENST00000347401 GIMAP7Q8NHV1 300 aa15.81■□□□□ 0.12
COL6A3-202ENST00000347401 COG3Q96JB2 828 aa15.81■□□□□ 0.12
COL6A3-202ENST00000347401 TRIM34Q9BYJ4 488 aa15.81■□□□□ 0.12
COL6A3-202ENST00000347401 SRCIN1Q9C0H9 1055 aa15.81■□□□□ 0.12
COL6A3-202ENST00000347401 ERICH3Q5RHP9 1530 aa15.81■□□□□ 0.12
COL6A3-202ENST00000347401 FEZ1Q99689 392 aa15.81■□□□□ 0.12
COL6A3-202ENST00000347401 TUBB4BP68371 445 aa15.8■□□□□ 0.12
COL6A3-202ENST00000347401 POTEB2H3BUK9 544 aa15.8■□□□□ 0.12
COL6A3-202ENST00000347401 NEMFO60524 1076 aa15.8■□□□□ 0.12
COL6A3-202ENST00000347401 PPFIBP1Q86W92 1011 aa15.8■□□□□ 0.12
COL6A3-202ENST00000347401 UQCRHLA0A096LP55 91 aa15.8■□□□□ 0.12
COL6A3-202ENST00000347401 UQCRHP07919 91 aa15.8■□□□□ 0.12
COL6A3-202ENST00000347401 ZNF428Q96B54 188 aa15.8■□□□□ 0.12
COL6A3-202ENST00000347401 CSB-PGBD3P0DP91 1061 aa15.79■□□□□ 0.12
COL6A3-202ENST00000347401 NFXL1Q6ZNB6 911 aa15.79■□□□□ 0.12
COL6A3-202ENST00000347401 PANK3Q9H999 370 aa15.79■□□□□ 0.12
COL6A3-202ENST00000347401 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.79■□□□□ 0.127e-8■■■■■ 186.3
COL6A3-202ENST00000347401 MEX3CQ5U5Q3 659 aaKnown RBP15.79■□□□□ 0.12
COL6A3-202ENST00000347401 SHTN1A0MZ66 631 aa15.79■□□□□ 0.12
COL6A3-202ENST00000347401 CCDC146Q8IYE0 955 aa15.79■□□□□ 0.12
COL6A3-202ENST00000347401 SYCP1Q15431 976 aa15.79■□□□□ 0.12
COL6A3-202ENST00000347401 VGFO15240 615 aaPredicted RBP15.79■□□□□ 0.12
COL6A3-202ENST00000347401 CGNQ9P2M7 1197 aaKnown RBP15.78■□□□□ 0.12
COL6A3-202ENST00000347401 KRT85P78386 507 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms