RNA–Protein interactions for RNA: ENST00000345392.2

VHL-202, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

TSL 1 (best) BASIC

Gene VHL, Length 2,696 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-202ENST00000345392 UPF2Q9HAU5 1272 aaKnown RBP22.73■■□□□ 1.23
VHL-202ENST00000345392 SENP3Q9H4L4 574 aaPredicted RBP22.73■■□□□ 1.23
VHL-202ENST00000345392 FANCAO15360 1455 aa22.72■■□□□ 1.23
VHL-202ENST00000345392 PDZRN3Q9UPQ7 1066 aa22.72■■□□□ 1.23
VHL-202ENST00000345392 CD109Q6YHK3 1445 aa22.72■■□□□ 1.23
VHL-202ENST00000345392 RARSP54136 660 aaKnown RBP22.72■■□□□ 1.23
VHL-202ENST00000345392 TBC1D32Q96NH3 1257 aa22.72■■□□□ 1.23
VHL-202ENST00000345392 ATP7AQ04656 1500 aa22.71■■□□□ 1.23
VHL-202ENST00000345392 RTEL1-TNFRSF6BF6WH68 1400 aa22.71■■□□□ 1.23
VHL-202ENST00000345392 TSPOAP1O95153 1857 aa22.71■■□□□ 1.23
VHL-202ENST00000345392 PMFBP1Q8TBY8 1022 aa22.7■■□□□ 1.22
VHL-202ENST00000345392 ERVK-7P63135 1459 aa22.7■■□□□ 1.22
VHL-202ENST00000345392 TET3O43151 1660 aa22.69■■□□□ 1.22
VHL-202ENST00000345392 L1TD1Q5T7N2 865 aaKnown RBP22.69■■□□□ 1.22
VHL-202ENST00000345392 GZF1Q9H116 711 aaPredicted RBP22.69■■□□□ 1.22
VHL-202ENST00000345392 TRAK1Q9UPV9 953 aa22.68■■□□□ 1.22
VHL-202ENST00000345392 NINLQ9Y2I6 1382 aa22.68■■□□□ 1.22
VHL-202ENST00000345392 KDM5AP29375 1690 aaKnown RBP22.68■■□□□ 1.22
VHL-202ENST00000345392 NGEFQ8N5V2 710 aa22.68■■□□□ 1.22
VHL-202ENST00000345392 DEPDC5O75140 1603 aa22.67■■□□□ 1.22
VHL-202ENST00000345392 ABCA6Q8N139 1617 aa22.67■■□□□ 1.22
VHL-202ENST00000345392 ABCA9Q8IUA7 1624 aa22.67■■□□□ 1.22
VHL-202ENST00000345392 ADGRL1O94910 1474 aa22.66■■□□□ 1.22
VHL-202ENST00000345392 TCP11L2Q8N4U5 519 aa22.65■■□□□ 1.22
VHL-202ENST00000345392 NUTM2DQ5VT03 806 aaPredicted RBP22.65■■□□□ 1.22
VHL-202ENST00000345392 TMEM132EQ6IEE7 984 aa22.65■■□□□ 1.22
VHL-202ENST00000345392 CFAP65Q6ZU64 1925 aaKnown RBP22.65■■□□□ 1.22
VHL-202ENST00000345392 XRCC6P12956 609 aaKnown RBP eCLIP22.65■■□□□ 1.22
VHL-202ENST00000345392 DIP2BQ9P265 1576 aa22.64■■□□□ 1.21
VHL-202ENST00000345392 INO80Q9ULG1 1556 aaPredicted RBP22.63■■□□□ 1.21
VHL-202ENST00000345392 SLC12A5Q9H2X9 1139 aa22.63■■□□□ 1.21
VHL-202ENST00000345392 MAP3K4Q9Y6R4 1608 aa22.62■■□□□ 1.21
VHL-202ENST00000345392 PANK2Q9BZ23 570 aa22.62■■□□□ 1.21
VHL-202ENST00000345392 POLR3AO14802 1390 aaPredicted RBP22.62■■□□□ 1.21
VHL-202ENST00000345392 MORC1Q86VD1 984 aa22.62■■□□□ 1.21
VHL-202ENST00000345392 RUNDC1Q96C34 613 aa22.62■■□□□ 1.21
VHL-202ENST00000345392 RWDD1Q9H446 243 aaPredicted RBP22.62■■□□□ 1.21
VHL-202ENST00000345392 NOS1P29475 1434 aa22.62■■□□□ 1.21
VHL-202ENST00000345392 MROH1Q8NDA8 1641 aa22.61■■□□□ 1.21
VHL-202ENST00000345392 GOLGA6L3A6NEY3 463 aa22.61■■□□□ 1.21
VHL-202ENST00000345392 MROH2AA6NES4 1674 aa22.61■■□□□ 1.21
VHL-202ENST00000345392 MCM4P33991 863 aa22.61■■□□□ 1.21
VHL-202ENST00000345392 STAC3Q96MF2 364 aa22.61■■□□□ 1.21
VHL-202ENST00000345392 VWDEQ8N2E2 1590 aa22.6■■□□□ 1.21
VHL-202ENST00000345392 GGT6Q6P531 493 aa22.6■■□□□ 1.21
VHL-202ENST00000345392 MFAP1P55081 439 aaKnown RBP22.59■■□□□ 1.21
VHL-202ENST00000345392 RAPGEF3O95398 923 aa22.58■■□□□ 1.2
VHL-202ENST00000345392 NSD3Q9BZ95 1437 aa22.58■■□□□ 1.2
VHL-202ENST00000345392 KIF13AQ9H1H9 1805 aa22.57■■□□□ 1.2
VHL-202ENST00000345392 C22orf23Q9BZE7 217 aa22.56■■□□□ 1.2
VHL-202ENST00000345392 FSD2A1L4K1 749 aa22.55■■□□□ 1.2
VHL-202ENST00000345392 AAMPQ13685 434 aa22.55■■□□□ 1.2
VHL-202ENST00000345392 PPRC1Q5VV67 1664 aaKnown RBP22.55■■□□□ 1.2
VHL-202ENST00000345392 ARAP3Q8WWN8 1544 aa22.55■■□□□ 1.2
VHL-202ENST00000345392 KIF1BO60333 1816 aa22.55■■□□□ 1.2
VHL-202ENST00000345392 WDR63Q8IWG1 891 aa22.54■■□□□ 1.2
VHL-202ENST00000345392 MYOM2P54296 1465 aa22.54■■□□□ 1.2
VHL-202ENST00000345392 MVPQ14764 893 aaKnown RBP22.54■■□□□ 1.2
VHL-202ENST00000345392 PHF23Q9BUL5 403 aaPredicted RBP22.54■■□□□ 1.2
VHL-202ENST00000345392 KIAA1210Q9ULL0 1709 aa22.54■■□□□ 1.2
VHL-202ENST00000345392 MTHFSP49914 203 aa22.54■■□□□ 1.2
VHL-202ENST00000345392 SAFB2Q14151 953 aaKnown RBP eCLIP22.54■■□□□ 1.2
VHL-202ENST00000345392 EFCAB6Q5THR3 1501 aa22.54■■□□□ 1.2
VHL-202ENST00000345392 TRAK2O60296 914 aa22.53■■□□□ 1.2
VHL-202ENST00000345392 FTSJ3Q8IY81 847 aaKnown RBP22.53■■□□□ 1.2
VHL-202ENST00000345392 SLC24A1O60721 1099 aa22.52■■□□□ 1.2
VHL-202ENST00000345392 CHMP5Q9NZZ3 219 aa22.52■■□□□ 1.2
VHL-202ENST00000345392 ZMYM3Q14202 1370 aa22.5■■□□□ 1.19
VHL-202ENST00000345392 NAP1L5Q96NT1 182 aaPredicted RBP22.5■■□□□ 1.19
VHL-202ENST00000345392 SHPRHQ149N8 1683 aa22.49■■□□□ 1.19
VHL-202ENST00000345392 KIDINS220Q9ULH0 1771 aa22.49■■□□□ 1.19
VHL-202ENST00000345392 ZKSCAN2Q63HK3 967 aa22.49■■□□□ 1.19
VHL-202ENST00000345392 DZIP1LQ8IYY4 767 aaKnown RBP22.49■■□□□ 1.19
VHL-202ENST00000345392 TSR2Q969E8 191 aaKnown RBP22.49■■□□□ 1.19
VHL-202ENST00000345392 GLI2P10070 1586 aa22.49■■□□□ 1.19
VHL-202ENST00000345392 IQSEC2Q5JU85 1478 aa22.48■■□□□ 1.19
VHL-202ENST00000345392 MYH16Q9H6N6 1097 aa22.48■■□□□ 1.19
VHL-202ENST00000345392 IFT172Q9UG01 1749 aa22.48■■□□□ 1.19
VHL-202ENST00000345392 PNNQ9H307 717 aaKnown RBP22.47■■□□□ 1.19
VHL-202ENST00000345392 U2AF1L5P0DN76 240 aaPredicted RBP22.46■■□□□ 1.19
VHL-202ENST00000345392 U2AF1Q01081 240 aaKnown RBP eCLIP22.46■■□□□ 1.19
VHL-202ENST00000345392 NPATQ14207 1427 aa22.46■■□□□ 1.19
VHL-202ENST00000345392 CCDC27Q2M243 656 aa22.44■■□□□ 1.18
VHL-202ENST00000345392 SMC4Q9NTJ3 1288 aa22.44■■□□□ 1.18
VHL-202ENST00000345392 ITPRIPQ8IWB1 547 aa22.44■■□□□ 1.18
VHL-202ENST00000345392 HSCBQ8IWL3 235 aa22.44■■□□□ 1.18
VHL-202ENST00000345392 C14orf93Q9H972 538 aaKnown RBP22.44■■□□□ 1.18
VHL-202ENST00000345392 NRXN1Q9ULB1 1477 aa22.44■■□□□ 1.18
VHL-202ENST00000345392 CLCN1P35523 988 aa22.44■■□□□ 1.18
VHL-202ENST00000345392 CFAP53Q96M91 514 aa22.44■■□□□ 1.18
VHL-202ENST00000345392 TRIM27P14373 513 aa22.43■■□□□ 1.18
VHL-202ENST00000345392 CABP2Q9NPB3 220 aa22.43■■□□□ 1.18
VHL-202ENST00000345392 ADGRB3O60242 1522 aa22.43■■□□□ 1.18
VHL-202ENST00000345392 MRE11P49959 708 aa22.42■■□□□ 1.18
VHL-202ENST00000345392 EXOSC9Q06265 439 aaKnown RBP22.42■■□□□ 1.18
VHL-202ENST00000345392 ZNF692Q9BU19 519 aaPredicted RBP22.42■■□□□ 1.18
VHL-202ENST00000345392 QRICH2Q9H0J4 1663 aa22.41■■□□□ 1.18
VHL-202ENST00000345392 GRPEL1Q9HAV7 217 aa22.4■■□□□ 1.18
VHL-202ENST00000345392 STK26Q9P289 416 aa22.4■■□□□ 1.18
VHL-202ENST00000345392 SBNO2Q9Y2G9 1366 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms