RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 YTHDC2Q9H6S0 1430 aaKnown RBP16.84■□□□□ 0.29
SNCA-202ENST00000345009 LRRC7Q96NW7 1537 aa16.84■□□□□ 0.29
SNCA-202ENST00000345009 NWD1Q149M9 1564 aa16.84■□□□□ 0.29
SNCA-202ENST00000345009 C19orf44Q9H6X5 657 aa16.82■□□□□ 0.28
SNCA-202ENST00000345009 POGKQ9P215 609 aa16.82■□□□□ 0.28
SNCA-202ENST00000345009 TRAK1Q9UPV9 953 aa16.82■□□□□ 0.28
SNCA-202ENST00000345009 PTCH1Q13635 1447 aa16.81■□□□□ 0.28
SNCA-202ENST00000345009 ROCK2O75116 1388 aaKnown RBP16.81■□□□□ 0.28
SNCA-202ENST00000345009 MSH6P52701 1360 aa16.81■□□□□ 0.28
SNCA-202ENST00000345009 NBPF1Q3BBV0 1214 aa16.81■□□□□ 0.28
SNCA-202ENST00000345009 RBM33Q96EV2 1170 aaKnown RBP16.81■□□□□ 0.28
SNCA-202ENST00000345009 TECPR2O15040 1411 aa16.8■□□□□ 0.28
SNCA-202ENST00000345009 ATF3P18847 181 aa16.8■□□□□ 0.28
SNCA-202ENST00000345009 NBPF8Q3BBV2 869 aa16.8■□□□□ 0.28
SNCA-202ENST00000345009 STRCP1A6NGW2 1772 aa16.79■□□□□ 0.28
SNCA-202ENST00000345009 SETD1AO15047 1707 aaKnown RBP16.79■□□□□ 0.28
SNCA-202ENST00000345009 KIAA1210Q9ULL0 1709 aa16.79■□□□□ 0.28
SNCA-202ENST00000345009 ROBO2Q9HCK4 1378 aa16.79■□□□□ 0.28
SNCA-202ENST00000345009 UBAP1LF5GYI3 381 aa16.79■□□□□ 0.28
SNCA-202ENST00000345009 CADPS2Q86UW7 1296 aa16.79■□□□□ 0.28
SNCA-202ENST00000345009 FAM135BQ49AJ0 1406 aa16.79■□□□□ 0.28
SNCA-202ENST00000345009 PRAM1Q96QH2 718 aa16.78■□□□□ 0.28
SNCA-202ENST00000345009 RBM42Q9BTD8 480 aaKnown RBP16.78■□□□□ 0.28
SNCA-202ENST00000345009 CARD11Q9BXL7 1154 aa16.78■□□□□ 0.28
SNCA-202ENST00000345009 XRN1Q8IZH2 1706 aaKnown RBP16.78■□□□□ 0.28
SNCA-202ENST00000345009 ADGRB1O14514 1584 aa16.77■□□□□ 0.28
SNCA-202ENST00000345009 WAPLQ7Z5K2 1190 aa16.77■□□□□ 0.28
SNCA-202ENST00000345009 EIF3AQ14152 1382 aaKnown RBP16.75■□□□□ 0.27
SNCA-202ENST00000345009 ASXL1Q8IXJ9 1541 aa16.75■□□□□ 0.27
SNCA-202ENST00000345009 FBXO41Q8TF61 875 aa16.74■□□□□ 0.27
SNCA-202ENST00000345009 DLC1Q96QB1 1528 aa16.74■□□□□ 0.27
SNCA-202ENST00000345009 SAFB2Q14151 953 aaKnown RBP eCLIP16.73■□□□□ 0.27
SNCA-202ENST00000345009 SLAIN2Q9P270 581 aa16.73■□□□□ 0.27
SNCA-202ENST00000345009 GPRASP1Q5JY77 1395 aa16.73■□□□□ 0.27
SNCA-202ENST00000345009 ADGRL3Q9HAR2 1447 aa16.72■□□□□ 0.27
SNCA-202ENST00000345009 RALGAPBQ86X10 1494 aa16.72■□□□□ 0.27
SNCA-202ENST00000345009 CENPJQ9HC77 1338 aaPredicted RBP16.71■□□□□ 0.27
SNCA-202ENST00000345009 DCCP43146 1447 aa16.71■□□□□ 0.27
SNCA-202ENST00000345009 KNDC1Q76NI1 1749 aa16.71■□□□□ 0.27
SNCA-202ENST00000345009 SLC24A1O60721 1099 aa16.71■□□□□ 0.27
SNCA-202ENST00000345009 MKRN4PQ13434 485 aaPredicted RBP16.71■□□□□ 0.27
SNCA-202ENST00000345009 TRPM1Q7Z4N2 1603 aa16.7■□□□□ 0.26
SNCA-202ENST00000345009 PIP4K2BP78356 416 aa16.7■□□□□ 0.26
SNCA-202ENST00000345009 PLEKHH1Q9ULM0 1364 aa16.69■□□□□ 0.26
SNCA-202ENST00000345009 MINK1Q8N4C8 1332 aaPredicted RBP16.68■□□□□ 0.26
SNCA-202ENST00000345009 XIRP1Q702N8 1843 aaKnown RBP16.67■□□□□ 0.26
SNCA-202ENST00000345009 HIRIP3Q9BW71 556 aaPredicted RBP16.66■□□□□ 0.26
SNCA-202ENST00000345009 WASLO00401 505 aaPredicted RBP16.65■□□□□ 0.26
SNCA-202ENST00000345009 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.65■□□□□ 0.26
SNCA-202ENST00000345009 ZEB1P37275 1124 aaPredicted RBP16.64■□□□□ 0.25
SNCA-202ENST00000345009 EVC2Q86UK5 1308 aa16.63■□□□□ 0.25
SNCA-202ENST00000345009 CDC42BPGQ6DT37 1551 aa16.61■□□□□ 0.25
SNCA-202ENST00000345009 ST20-MTHFSA0A0A6YYL1 179 aa16.61■□□□□ 0.25
SNCA-202ENST00000345009 NUTM2FA1L443 756 aa16.61■□□□□ 0.25
SNCA-202ENST00000345009 EIF4G2P78344 907 aaKnown RBP eCLIP16.61■□□□□ 0.25
SNCA-202ENST00000345009 ESCO1Q5FWF5 840 aa16.61■□□□□ 0.25
SNCA-202ENST00000345009 CDK19Q9BWU1 502 aa16.61■□□□□ 0.25
SNCA-202ENST00000345009 ARHGEF28Q8N1W1 1705 aaKnown RBP16.61■□□□□ 0.25
SNCA-202ENST00000345009 USP47Q96K76 1375 aa16.61■□□□□ 0.25
SNCA-202ENST00000345009 NALCNQ8IZF0 1738 aa16.6■□□□□ 0.25
SNCA-202ENST00000345009 SRPK2P78362 688 aaKnown RBP16.6■□□□□ 0.25
SNCA-202ENST00000345009 MST1RQ04912 1400 aa16.6■□□□□ 0.25
SNCA-202ENST00000345009 SBNO2Q9Y2G9 1366 aa16.59■□□□□ 0.25
SNCA-202ENST00000345009 C1orf167Q5SNV9 1468 aa16.59■□□□□ 0.25
SNCA-202ENST00000345009 BRINP3Q76B58 766 aa16.58■□□□□ 0.24
SNCA-202ENST00000345009 ANKARQ7Z5J8 1434 aa16.57■□□□□ 0.24
SNCA-202ENST00000345009 CDCA8Q53HL2 280 aa16.57■□□□□ 0.24
SNCA-202ENST00000345009 CCDC61Q9Y6R9 512 aa16.57■□□□□ 0.24
SNCA-202ENST00000345009 ADGRB2O60241 1585 aa16.56■□□□□ 0.24
SNCA-202ENST00000345009 TMF1P82094 1093 aa16.56■□□□□ 0.24
SNCA-202ENST00000345009 ILDR1Q86SU0 546 aaPredicted RBP16.56■□□□□ 0.24
SNCA-202ENST00000345009 NUDT16Q96DE0 195 aaKnown RBP16.56■□□□□ 0.24
SNCA-202ENST00000345009 ORAI2Q96SN7 254 aa16.56■□□□□ 0.24
SNCA-202ENST00000345009 PHF8Q9UPP1 1060 aa16.55■□□□□ 0.24
SNCA-202ENST00000345009 PUS7Q96PZ0 661 aaKnown RBP16.54■□□□□ 0.24
SNCA-202ENST00000345009 CABP2Q9NPB3 220 aa16.54■□□□□ 0.24
SNCA-202ENST00000345009 QRICH2Q9H0J4 1663 aa16.53■□□□□ 0.24
SNCA-202ENST00000345009 NPHP3Q7Z494 1330 aa16.53■□□□□ 0.24
SNCA-202ENST00000345009 TESK2Q96S53 571 aa16.53■□□□□ 0.24
SNCA-202ENST00000345009 TULP4Q9NRJ4 1543 aa16.52■□□□□ 0.24
SNCA-202ENST00000345009 SPDYE2BA6NHP3 402 aa16.52■□□□□ 0.24
SNCA-202ENST00000345009 FOXO3O43524 673 aa16.52■□□□□ 0.24
SNCA-202ENST00000345009 SPDYE6P0CI01 402 aa16.52■□□□□ 0.24
SNCA-202ENST00000345009 HSPA1LP34931 641 aa16.52■□□□□ 0.24
SNCA-202ENST00000345009 PSME1Q06323 249 aa16.52■□□□□ 0.24
SNCA-202ENST00000345009 SPDYE2Q495Y8 402 aa16.52■□□□□ 0.24
SNCA-202ENST00000345009 NGDNQ8NEJ9 315 aaKnown RBP16.52■□□□□ 0.24
SNCA-202ENST00000345009 ATAD2Q6PL18 1390 aa16.51■□□□□ 0.23
SNCA-202ENST00000345009 FMN2Q9NZ56 1722 aa16.51■□□□□ 0.23
SNCA-202ENST00000345009 ROBO1Q9Y6N7 1651 aa16.51■□□□□ 0.23
SNCA-202ENST00000345009 HSPA5P11021 654 aaKnown RBP16.51■□□□□ 0.23
SNCA-202ENST00000345009 PMFBP1Q8TBY8 1022 aa16.5■□□□□ 0.23
SNCA-202ENST00000345009 LRRC59Q96AG4 307 aaKnown RBP16.5■□□□□ 0.23
SNCA-202ENST00000345009 PRR36Q9H6K5 1346 aa16.49■□□□□ 0.23
SNCA-202ENST00000345009 PLEKHG3A1L390 1219 aa16.49■□□□□ 0.23
SNCA-202ENST00000345009 AKT1S1Q96B36 256 aa16.49■□□□□ 0.23
SNCA-202ENST00000345009 ZNF692Q9BU19 519 aaPredicted RBP16.49■□□□□ 0.23
SNCA-202ENST00000345009 CABP1Q9NZU7 370 aa16.48■□□□□ 0.23
SNCA-202ENST00000345009 KRT28Q7Z3Y7 464 aa16.47■□□□□ 0.23
SNCA-202ENST00000345009 TMC1Q8TDI8 760 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms