RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 NEK4P51957 841 aa21.78■■□□□ 1.08
SMC4-201ENST00000344722 CCDC112Q8NEF3 446 aa21.78■■□□□ 1.08
SMC4-201ENST00000344722 TCP11L2Q8N4U5 519 aa21.77■■□□□ 1.08
SMC4-201ENST00000344722 NBPF8Q3BBV2 869 aa21.77■■□□□ 1.08
SMC4-201ENST00000344722 ANKRD20A12PQ8NF67 263 aa21.77■■□□□ 1.08
SMC4-201ENST00000344722 CPLX2Q6PUV4 134 aaKnown RBP21.76■■□□□ 1.07
SMC4-201ENST00000344722 ERCC4Q92889 916 aaPredicted RBP21.76■■□□□ 1.07
SMC4-201ENST00000344722 IFIT2P09913 472 aaKnown RBP21.75■■□□□ 1.07
SMC4-201ENST00000344722 ZMYND15Q9H091 742 aa21.75■■□□□ 1.07
SMC4-201ENST00000344722 ERCC6Q03468 1493 aa21.75■■□□□ 1.07
SMC4-201ENST00000344722 PDCL2Q8N4E4 241 aa21.75■■□□□ 1.07
SMC4-201ENST00000344722 CT47B1P0C2W7 299 aaPredicted RBP21.74■■□□□ 1.07
SMC4-201ENST00000344722 DHX8Q14562 1220 aaKnown RBP21.74■■□□□ 1.07
SMC4-201ENST00000344722 CCDC192P0DO97 292 aa21.74■■□□□ 1.07
SMC4-201ENST00000344722 LEKR1Q6ZMV7 388 aa21.74■■□□□ 1.07
SMC4-201ENST00000344722 HSP90AB4PQ58FF6 505 aa21.74■■□□□ 1.07
SMC4-201ENST00000344722 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.73■■□□□ 1.07
SMC4-201ENST00000344722 COG3Q96JB2 828 aa21.73■■□□□ 1.07
SMC4-201ENST00000344722 RUFY1Q96T51 708 aa21.73■■□□□ 1.07
SMC4-201ENST00000344722 ERC2O15083 957 aa21.73■■□□□ 1.07
SMC4-201ENST00000344722 TAF7LQ5H9L4 462 aa21.73■■□□□ 1.07
SMC4-201ENST00000344722 BCL11BQ9C0K0 894 aaPredicted RBP21.73■■□□□ 1.07
SMC4-201ENST00000344722 AMPHP49418 695 aa21.73■■□□□ 1.07
SMC4-201ENST00000344722 SPC24Q8NBT2 197 aa21.73■■□□□ 1.07
SMC4-201ENST00000344722 MVPQ14764 893 aaKnown RBP21.72■■□□□ 1.07
SMC4-201ENST00000344722 TRIM29Q14134 588 aa21.72■■□□□ 1.07
SMC4-201ENST00000344722 WDR33Q9C0J8 1336 aaKnown RBP21.72■■□□□ 1.07
SMC4-201ENST00000344722 ANKRD50Q9ULJ7 1429 aa21.72■■□□□ 1.07
SMC4-201ENST00000344722 LRRFIP1Q32MZ4 808 aaKnown RBP21.72■■□□□ 1.07
SMC4-201ENST00000344722 C11orf95C9JLR9 678 aaPredicted RBP21.71■■□□□ 1.07
SMC4-201ENST00000344722 CLSTN1O94985 981 aa21.71■■□□□ 1.07
SMC4-201ENST00000344722 SCAPERQ9BY12 1400 aa21.71■■□□□ 1.07
SMC4-201ENST00000344722 NPHP1O15259 732 aa21.71■■□□□ 1.07
SMC4-201ENST00000344722 PDCP20941 246 aa21.7■■□□□ 1.06
SMC4-201ENST00000344722 APPP05067 770 aa21.7■■□□□ 1.06
SMC4-201ENST00000344722 PSMA5P28066 241 aa21.7■■□□□ 1.06
SMC4-201ENST00000344722 CCDC27Q2M243 656 aa21.7■■□□□ 1.06
SMC4-201ENST00000344722 PLEKHH2Q8IVE3 1493 aa21.7■■□□□ 1.06
SMC4-201ENST00000344722 CPLX1O14810 134 aa21.7■■□□□ 1.06
SMC4-201ENST00000344722 CLCN1P35523 988 aa21.7■■□□□ 1.06
SMC4-201ENST00000344722 WDR63Q8IWG1 891 aa21.7■■□□□ 1.06
SMC4-201ENST00000344722 FBXW7Q969H0 707 aa21.69■■□□□ 1.06
SMC4-201ENST00000344722 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.69■■□□□ 1.063e-9■■■■■ 74.3
SMC4-201ENST00000344722 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.69■■□□□ 1.06
SMC4-201ENST00000344722 CALRP27797 417 aaKnown RBP21.69■■□□□ 1.06
SMC4-201ENST00000344722 EXOSC9Q06265 439 aaKnown RBP21.69■■□□□ 1.06
SMC4-201ENST00000344722 VGFO15240 615 aaPredicted RBP21.69■■□□□ 1.06
SMC4-201ENST00000344722 NUTM2DQ5VT03 806 aaPredicted RBP21.69■■□□□ 1.06
SMC4-201ENST00000344722 TOMM22Q9NS69 142 aa21.69■■□□□ 1.06
SMC4-201ENST00000344722 TIAM1Q13009 1591 aa21.68■■□□□ 1.06
SMC4-201ENST00000344722 FIBPO43427 364 aa21.68■■□□□ 1.06
SMC4-201ENST00000344722 SYNE3Q6ZMZ3 975 aa21.67■■□□□ 1.06
SMC4-201ENST00000344722 OLFM4Q6UX06 510 aa21.67■■□□□ 1.06
SMC4-201ENST00000344722 SDF4Q9BRK5 362 aa21.67■■□□□ 1.06
SMC4-201ENST00000344722 CDR1P51861 262 aa21.67■■□□□ 1.06
SMC4-201ENST00000344722 CHD1LQ86WJ1 897 aa21.67■■□□□ 1.06
SMC4-201ENST00000344722 AKAP17AQ02040 695 aaKnown RBP21.66■■□□□ 1.06
SMC4-201ENST00000344722 SLFN5Q08AF3 891 aa21.66■■□□□ 1.06
SMC4-201ENST00000344722 NOB1Q9ULX3 412 aaKnown RBP21.66■■□□□ 1.06
SMC4-201ENST00000344722 FKBP5Q13451 457 aaPredicted RBP21.66■■□□□ 1.06
SMC4-201ENST00000344722 MCM5P33992 734 aa21.65■■□□□ 1.06
SMC4-201ENST00000344722 C9orf78Q9NZ63 289 aaPredicted RBP21.65■■□□□ 1.06
SMC4-201ENST00000344722 H0YHG0 523 aa21.65■■□□□ 1.06
SMC4-201ENST00000344722 CNTROBQ8N137 903 aa21.65■■□□□ 1.06
SMC4-201ENST00000344722 KIAA1107Q9UPP5 1409 aa21.65■■□□□ 1.06
SMC4-201ENST00000344722 KINO60870 393 aaKnown RBP21.65■■□□□ 1.06
SMC4-201ENST00000344722 AEBP1Q8IUX7 1158 aa21.65■■□□□ 1.06
SMC4-201ENST00000344722 CEP89Q96ST8 783 aa21.65■■□□□ 1.06
SMC4-201ENST00000344722 ZNF644Q9H582 1327 aaPredicted RBP21.65■■□□□ 1.06
SMC4-201ENST00000344722 RDXP35241 583 aaKnown RBP21.64■■□□□ 1.06
SMC4-201ENST00000344722 TBC1D2Q9BYX2 928 aa21.64■■□□□ 1.06
SMC4-201ENST00000344722 MTHFSP49914 203 aa21.64■■□□□ 1.05
SMC4-201ENST00000344722 SMC2O95347 1197 aa21.64■■□□□ 1.05
SMC4-201ENST00000344722 ATF7IPQ6VMQ6 1270 aa21.63■■□□□ 1.05
SMC4-201ENST00000344722 PCMTD1Q96MG8 357 aaPredicted RBP21.63■■□□□ 1.05
SMC4-201ENST00000344722 PRDM10Q9NQV6 1147 aa21.63■■□□□ 1.05
SMC4-201ENST00000344722 PDILTQ8N807 584 aa21.62■■□□□ 1.05
SMC4-201ENST00000344722 TSPYL1Q9H0U9 437 aa21.62■■□□□ 1.05
SMC4-201ENST00000344722 CBX1P83916 185 aa21.62■■□□□ 1.05
SMC4-201ENST00000344722 MPNDQ8N594 471 aa21.62■■□□□ 1.05
SMC4-201ENST00000344722 SYCE3A1L190 88 aa21.62■■□□□ 1.05
SMC4-201ENST00000344722 G3BP1Q13283 466 aaKnown RBP eCLIP21.62■■□□□ 1.051e-39■■■■■ 140
SMC4-201ENST00000344722 DYNC1I1O14576 645 aa21.61■■□□□ 1.05
SMC4-201ENST00000344722 TNMDQ9H2S6 317 aa21.61■■□□□ 1.05
SMC4-201ENST00000344722 XPCQ01831 940 aaPredicted RBP21.61■■□□□ 1.05
SMC4-201ENST00000344722 CCDC47Q96A33 483 aaKnown RBP21.61■■□□□ 1.05
SMC4-201ENST00000344722 PATL2C9JE40 543 aaKnown RBP21.6■■□□□ 1.05
SMC4-201ENST00000344722 FGD5Q6ZNL6 1462 aa21.59■■□□□ 1.05
SMC4-201ENST00000344722 CFTRP13569 1480 aa21.59■■□□□ 1.05
SMC4-201ENST00000344722 NEXNQ0ZGT2 675 aa21.59■■□□□ 1.05
SMC4-201ENST00000344722 NGDNQ8NEJ9 315 aaKnown RBP21.59■■□□□ 1.05
SMC4-201ENST00000344722 ZNF330Q9Y3S2 320 aaPredicted RBP21.59■■□□□ 1.05
SMC4-201ENST00000344722 TNPO1Q92973 898 aaKnown RBP21.59■■□□□ 1.05
SMC4-201ENST00000344722 GNAI3P08754 354 aa21.58■■□□□ 1.05
SMC4-201ENST00000344722 C1orf115Q9H7X2 142 aa21.58■■□□□ 1.05
SMC4-201ENST00000344722 EHBP1L1Q8N3D4 1523 aa21.58■■□□□ 1.05
SMC4-201ENST00000344722 PRXQ9BXM0 1461 aa21.58■■□□□ 1.05
SMC4-201ENST00000344722 C20orf194Q5TEA3 1177 aa21.58■■□□□ 1.04
SMC4-201ENST00000344722 MLECQ14165 292 aa21.58■■□□□ 1.04
SMC4-201ENST00000344722 SKAP1Q86WV1 359 aa21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms