RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 DNAJC21Q5F1R6 531 aaKnown RBP4.53□□□□□ -1.68
SYNE2-202ENST00000344113 WWC1Q8IX03 1113 aa4.53□□□□□ -1.68
SYNE2-202ENST00000344113 CENPQQ7L2Z9 268 aaPredicted RBP4.53□□□□□ -1.68
SYNE2-202ENST00000344113 ATP8B1O43520 1251 aa4.53□□□□□ -1.68
SYNE2-202ENST00000344113 BACH2Q9BYV9 841 aa4.53□□□□□ -1.68
SYNE2-202ENST00000344113 CLIP1P30622 1438 aa4.53□□□□□ -1.68
SYNE2-202ENST00000344113 OTUD6BQ8N6M0 293 aa4.53□□□□□ -1.68
SYNE2-202ENST00000344113 ANAPC4Q9UJX5 808 aa4.53□□□□□ -1.68
SYNE2-202ENST00000344113 TSPY4P0CV99 314 aa4.53□□□□□ -1.68
SYNE2-202ENST00000344113 TSPY10P0CW01 314 aa4.53□□□□□ -1.68
SYNE2-202ENST00000344113 FRAT1Q92837 279 aaPredicted RBP4.53□□□□□ -1.68
SYNE2-202ENST00000344113 DHX29Q7Z478 1369 aaKnown RBP4.53□□□□□ -1.68
SYNE2-202ENST00000344113 RASSF8Q8NHQ8 419 aa4.53□□□□□ -1.68
SYNE2-202ENST00000344113 MCM3P25205 808 aa4.53□□□□□ -1.69
SYNE2-202ENST00000344113 FMNL3Q8IVF7 1028 aa4.53□□□□□ -1.69
SYNE2-202ENST00000344113 ZMAT2Q96NC0 199 aaKnown RBP4.53□□□□□ -1.69
SYNE2-202ENST00000344113 CHMP5Q9NZZ3 219 aa4.53□□□□□ -1.69
SYNE2-202ENST00000344113 TCP11Q8WWU5 503 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 OGFRQ9NZT2 677 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 STAC3Q96MF2 364 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 RNF123Q5XPI4 1314 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 ZCCHC6Q5VYS8 1495 aaKnown RBP4.52□□□□□ -1.69
SYNE2-202ENST00000344113 JAKMIP3Q5VZ66 844 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 CFAP53Q96M91 514 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 NUCKS1Q9H1E3 243 aaKnown RBP4.52□□□□□ -1.69
SYNE2-202ENST00000344113 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.52□□□□□ -1.69
SYNE2-202ENST00000344113 FSD2A1L4K1 749 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 TDO2P48775 406 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 ZBTB17Q13105 803 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 CCDC38Q502W7 563 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 CGNL1Q0VF96 1302 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 FAM161AQ3B820 660 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 RABEP2Q9H5N1 569 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 CFAP57Q96MR6 1250 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 SEPT6Q14141 434 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 ZNF853P0CG23 659 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 ISM2Q6H9L7 571 aa4.52□□□□□ -1.69
SYNE2-202ENST00000344113 SASS6Q6UVJ0 657 aa4.51□□□□□ -1.69
SYNE2-202ENST00000344113 PRDM4Q9UKN5 801 aa4.51□□□□□ -1.69
SYNE2-202ENST00000344113 PPP1R12AO14974 1030 aaPredicted RBP4.51□□□□□ -1.69
SYNE2-202ENST00000344113 UIMC1Q96RL1 719 aa4.51□□□□□ -1.69
SYNE2-202ENST00000344113 GOLGA3Q08378 1498 aa4.51□□□□□ -1.69
SYNE2-202ENST00000344113 CDCA8Q53HL2 280 aa4.51□□□□□ -1.69
SYNE2-202ENST00000344113 RUFY1Q96T51 708 aa4.51□□□□□ -1.69
SYNE2-202ENST00000344113 CEP83Q9Y592 693 aa4.51□□□□□ -1.69
SYNE2-202ENST00000344113 ZNHIT6Q9NWK9 470 aaKnown RBP4.51□□□□□ -1.69
SYNE2-202ENST00000344113 SECISBP2LQ93073 1101 aaKnown RBP4.51□□□□□ -1.69
SYNE2-202ENST00000344113 USH1CQ9Y6N9 552 aa4.51□□□□□ -1.69
SYNE2-202ENST00000344113 LARP6Q9BRS8 491 aaKnown RBP4.51□□□□□ -1.69
SYNE2-202ENST00000344113 CCDC172P0C7W6 258 aa4.51□□□□□ -1.69
SYNE2-202ENST00000344113 HSP90AB2PQ58FF8 381 aa4.51□□□□□ -1.69
SYNE2-202ENST00000344113 KIF3BO15066 747 aa4.51□□□□□ -1.69
SYNE2-202ENST00000344113 SHTN1A0MZ66 631 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 SMC4Q9NTJ3 1288 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 ST18O60284 1047 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 A0A1B0GUA9 196 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 GTF2F1P35269 517 aaKnown RBP eCLIP4.5□□□□□ -1.69
SYNE2-202ENST00000344113 CCDC73Q6ZRK6 1079 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 CEP164Q9UPV0 1460 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 SPATS2Q86XZ4 545 aaKnown RBP4.5□□□□□ -1.69
SYNE2-202ENST00000344113 MBD3O95983 291 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 PDCD2Q16342 344 aaPredicted RBP4.5□□□□□ -1.69
SYNE2-202ENST00000344113 MSL3Q8N5Y2 521 aaKnown RBP4.5□□□□□ -1.69
SYNE2-202ENST00000344113 POLE3Q9NRF9 147 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 NOL7Q9UMY1 257 aaKnown RBP4.5□□□□□ -1.69
SYNE2-202ENST00000344113 CTAGE5O15320 804 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 PAXBP1Q9Y5B6 917 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 ANKRD18AQ8IVF6 992 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 RNF214Q8ND24 703 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 NEMFO60524 1076 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 MRS2Q9HD23 443 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.5□□□□□ -1.69
SYNE2-202ENST00000344113 TXLNBQ8N3L3 684 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 ZFP91Q96JP5 570 aaPredicted RBP4.5□□□□□ -1.69
SYNE2-202ENST00000344113 NBPF7P0C2Y1 421 aaPredicted RBP4.5□□□□□ -1.69
SYNE2-202ENST00000344113 PDE4AP27815 886 aa4.5□□□□□ -1.69
SYNE2-202ENST00000344113 SDCCAG8Q86SQ7 713 aaPredicted RBP4.5□□□□□ -1.69
SYNE2-202ENST00000344113 ATP6V1AP38606 617 aa4.49□□□□□ -1.69
SYNE2-202ENST00000344113 TSR1Q2NL82 804 aaKnown RBP4.49□□□□□ -1.69
SYNE2-202ENST00000344113 FHAD1B1AJZ9 1412 aa4.49□□□□□ -1.69
SYNE2-202ENST00000344113 IQCEQ6IPM2 695 aa4.49□□□□□ -1.69
SYNE2-202ENST00000344113 DNAAF4Q8WXU2 420 aa4.49□□□□□ -1.69
SYNE2-202ENST00000344113 PSMC1P62191 440 aaKnown RBP4.49□□□□□ -1.69
SYNE2-202ENST00000344113 CCDC65Q8IXS2 484 aa4.49□□□□□ -1.69
SYNE2-202ENST00000344113 MAP9Q49MG5 647 aa4.49□□□□□ -1.69
SYNE2-202ENST00000344113 SPRYD3Q8NCJ5 442 aa4.49□□□□□ -1.69
SYNE2-202ENST00000344113 NAP1L3Q99457 506 aaPredicted RBP4.49□□□□□ -1.69
SYNE2-202ENST00000344113 CGNQ9P2M7 1197 aaKnown RBP4.49□□□□□ -1.69
SYNE2-202ENST00000344113 ERLIN1O75477 346 aa4.49□□□□□ -1.69
SYNE2-202ENST00000344113 RRBP1Q9P2E9 1410 aaKnown RBP4.49□□□□□ -1.69
SYNE2-202ENST00000344113 GBP7Q8N8V2 638 aaPredicted RBP4.49□□□□□ -1.69
SYNE2-202ENST00000344113 GTF2E1P29083 439 aaPredicted RBP4.49□□□□□ -1.69
SYNE2-202ENST00000344113 DONSONQ9NYP3 566 aa4.49□□□□□ -1.69
SYNE2-202ENST00000344113 SATB2Q9UPW6 733 aa4.49□□□□□ -1.69
SYNE2-202ENST00000344113 PPFIA3O75145 1194 aa4.48□□□□□ -1.69
SYNE2-202ENST00000344113 MNAT1P51948 309 aa4.48□□□□□ -1.69
SYNE2-202ENST00000344113 UVSSAQ2YD98 709 aa4.48□□□□□ -1.69
SYNE2-202ENST00000344113 LIMCH1Q9UPQ0 1083 aa4.48□□□□□ -1.69
SYNE2-202ENST00000344113 NUDCQ9Y266 331 aa4.48□□□□□ -1.69
SYNE2-202ENST00000344113 EZRP15311 586 aaKnown RBP4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms