RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 RIOK3O14730 519 aaKnown RBP11.92□□□□□ -0.5
PTCHD4-201ENST00000339488 MMP14P50281 582 aa11.92□□□□□ -0.5
PTCHD4-201ENST00000339488 FEZ2Q9UHY8 353 aaPredicted RBP11.92□□□□□ -0.5
PTCHD4-201ENST00000339488 PDZRN3Q9UPQ7 1066 aa11.92□□□□□ -0.5
PTCHD4-201ENST00000339488 HFM1A2PYH4 1435 aa11.92□□□□□ -0.5
PTCHD4-201ENST00000339488 TULP2O00295 520 aa11.91□□□□□ -0.5
PTCHD4-201ENST00000339488 KLHL40Q2TBA0 621 aa11.91□□□□□ -0.5
PTCHD4-201ENST00000339488 CEP170Q5SW79 1584 aa11.91□□□□□ -0.5
PTCHD4-201ENST00000339488 TOMM22Q9NS69 142 aa11.91□□□□□ -0.5
PTCHD4-201ENST00000339488 SYCE3A1L190 88 aa11.91□□□□□ -0.5
PTCHD4-201ENST00000339488 GYS2P54840 703 aa11.9□□□□□ -0.5
PTCHD4-201ENST00000339488 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.9□□□□□ -0.5
PTCHD4-201ENST00000339488 PRIMPOLQ96LW4 560 aa11.9□□□□□ -0.5
PTCHD4-201ENST00000339488 PLEKHH1Q9ULM0 1364 aa11.9□□□□□ -0.5
PTCHD4-201ENST00000339488 TRHP20396 242 aaPredicted RBP11.9□□□□□ -0.5
PTCHD4-201ENST00000339488 GTF2F1P35269 517 aaKnown RBP eCLIP11.9□□□□□ -0.56e-16■■■■■ 57.3
PTCHD4-201ENST00000339488 HMGN5P82970 282 aaKnown RBP11.9□□□□□ -0.5
PTCHD4-201ENST00000339488 NOLC1Q14978 699 aaKnown RBP eCLIP11.9□□□□□ -0.5
PTCHD4-201ENST00000339488 NLRP13Q86W25 1043 aa11.9□□□□□ -0.5
PTCHD4-201ENST00000339488 SIRT1Q96EB6 747 aa11.9□□□□□ -0.5
PTCHD4-201ENST00000339488 RSPH14Q9UHP6 348 aa11.9□□□□□ -0.5
PTCHD4-201ENST00000339488 FMN1Q68DA7 1419 aa11.9□□□□□ -0.51
PTCHD4-201ENST00000339488 BAG4O95429 457 aaKnown RBP11.89□□□□□ -0.51
PTCHD4-201ENST00000339488 BCCIPQ9P287 314 aaKnown RBP eCLIP11.89□□□□□ -0.51
PTCHD4-201ENST00000339488 OGFRQ9NZT2 677 aa11.89□□□□□ -0.51
PTCHD4-201ENST00000339488 TNNQ9UQP3 1299 aa11.89□□□□□ -0.51
PTCHD4-201ENST00000339488 CTTNBP2Q8WZ74 1663 aa11.89□□□□□ -0.51
PTCHD4-201ENST00000339488 ZNF445P59923 1031 aa11.89□□□□□ -0.51
PTCHD4-201ENST00000339488 TERF2Q15554 542 aa11.89□□□□□ -0.51
PTCHD4-201ENST00000339488 SPINK5Q9NQ38 1064 aaPredicted RBP11.89□□□□□ -0.51
PTCHD4-201ENST00000339488 AK9Q5TCS8 1911 aa11.88□□□□□ -0.51
PTCHD4-201ENST00000339488 TNNT1P13805 278 aa11.88□□□□□ -0.51
PTCHD4-201ENST00000339488 MCM5P33992 734 aa11.88□□□□□ -0.51
PTCHD4-201ENST00000339488 CLUAP1Q96AJ1 413 aa11.88□□□□□ -0.51
PTCHD4-201ENST00000339488 MPHOSPH9Q99550 1183 aa11.88□□□□□ -0.51
PTCHD4-201ENST00000339488 RBM42Q9BTD8 480 aaKnown RBP11.88□□□□□ -0.51
PTCHD4-201ENST00000339488 GOLGA6L22H0YM25 854 aa11.88□□□□□ -0.51
PTCHD4-201ENST00000339488 CLGNO14967 610 aa11.88□□□□□ -0.51
PTCHD4-201ENST00000339488 EIF3AQ14152 1382 aaKnown RBP11.87□□□□□ -0.51
PTCHD4-201ENST00000339488 GABPB1Q06547 395 aaPredicted RBP11.87□□□□□ -0.51
PTCHD4-201ENST00000339488 GPATCH11Q8N954 259 aa11.87□□□□□ -0.51
PTCHD4-201ENST00000339488 NSFL1CQ9UNZ2 370 aaKnown RBP11.87□□□□□ -0.51
PTCHD4-201ENST00000339488 RALBP1Q15311 655 aa11.87□□□□□ -0.51
PTCHD4-201ENST00000339488 ANKRD7Q92527 254 aa11.87□□□□□ -0.51
PTCHD4-201ENST00000339488 NCOA3Q9Y6Q9 1424 aa11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 MTUS2Q5JR59 1369 aa11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 PKP1Q13835 747 aa11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 TPRNQ4KMQ1 711 aa11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 CT47A1Q5JQC4 288 aaPredicted RBP11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 ADAMTS8Q9UP79 889 aa11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 PCDHB15Q9Y5E8 787 aa11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 POLR1AO95602 1720 aaPredicted RBP11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 FOXD4L5Q5VV16 416 aaPredicted RBP11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 GAS2L2Q8NHY3 880 aa11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 FOXD4L4Q8WXT5 416 aaPredicted RBP11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 NUP160Q12769 1436 aa11.86□□□□□ -0.51
PTCHD4-201ENST00000339488 NCBP1Q09161 790 aaKnown RBP11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 RAD51AP2Q09MP3 1159 aa11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 SMC5Q8IY18 1101 aa11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 GEMIN8Q9NWZ8 242 aaKnown RBP11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 RBM25P49756 843 aaKnown RBP11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 HNRNPH2P55795 449 aaKnown RBP11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 PIBF1Q8WXW3 757 aa11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 CALCOCO1Q9P1Z2 691 aa11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 CTNNA3Q9UI47 895 aa11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 PRPF40AO75400 957 aaKnown RBP11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 GTF2A1P52655 376 aaPredicted RBP11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 SRPK2P78362 688 aaKnown RBP11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 BANK1Q8NDB2 785 aa11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 GPT2Q8TD30 523 aa11.85□□□□□ -0.51
PTCHD4-201ENST00000339488 FGD6Q6ZV73 1430 aa11.84□□□□□ -0.51
PTCHD4-201ENST00000339488 ROCK2O75116 1388 aaKnown RBP11.84□□□□□ -0.51
PTCHD4-201ENST00000339488 TULP1O00294 542 aaPredicted RBP11.84□□□□□ -0.51
PTCHD4-201ENST00000339488 CCDC146Q8IYE0 955 aa11.84□□□□□ -0.51
PTCHD4-201ENST00000339488 TMEM63CQ9P1W3 806 aa11.84□□□□□ -0.51
PTCHD4-201ENST00000339488 FEZ1Q99689 392 aa11.83□□□□□ -0.52
PTCHD4-201ENST00000339488 IQGAP2Q13576 1575 aa11.83□□□□□ -0.52
PTCHD4-201ENST00000339488 TRIM66O15016 1216 aa11.83□□□□□ -0.52
PTCHD4-201ENST00000339488 IBTKQ9P2D0 1353 aaPredicted RBP11.83□□□□□ -0.52
PTCHD4-201ENST00000339488 KDM6BO15054 1643 aa11.82□□□□□ -0.52
PTCHD4-201ENST00000339488 GOLGA2Q08379 1002 aa11.82□□□□□ -0.52
PTCHD4-201ENST00000339488 LMOD3Q0VAK6 560 aa11.82□□□□□ -0.52
PTCHD4-201ENST00000339488 LMBRD1Q9NUN5 540 aa11.82□□□□□ -0.52
PTCHD4-201ENST00000339488 TEX14Q8IWB6 1497 aa11.82□□□□□ -0.52
PTCHD4-201ENST00000339488 FKBP5Q13451 457 aaPredicted RBP11.82□□□□□ -0.52
PTCHD4-201ENST00000339488 PLCB2Q00722 1185 aa11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 FAM43BQ6ZT52 329 aaPredicted RBP11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 BCL2L13Q9BXK5 485 aa11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 STK26Q9P289 416 aa11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 USP25Q9UHP3 1055 aa11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 DDX41Q9UJV9 622 aaKnown RBP11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 V9GYY5 206 aaPredicted RBP11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 ZMYM4Q5VZL5 1548 aa11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 DHX16O60231 1041 aaKnown RBP11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 C10orf67Q8IYJ2 551 aa11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 CIZ1Q9ULV3 898 aaPredicted RBP11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 BLMP54132 1417 aaPredicted RBP11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 KIAA0586Q9BVV6 1533 aa11.81□□□□□ -0.52
PTCHD4-201ENST00000339488 ST20-MTHFSA0A0A6YYL1 179 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms