RNA–Protein interactions for RNA: ENST00000330687.8

CMTM4-201, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 3,414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-201ENST00000330687 K7ELQ4 463 aaPredicted RBP25.55■■□□□ 1.68
CMTM4-201ENST00000330687 U2AF1L5P0DN76 240 aaPredicted RBP25.55■■□□□ 1.68
CMTM4-201ENST00000330687 U2AF1Q01081 240 aaKnown RBP eCLIP25.55■■□□□ 1.68
CMTM4-201ENST00000330687 PLCB2Q00722 1185 aa25.55■■□□□ 1.68
CMTM4-201ENST00000330687 C1orf115Q9H7X2 142 aa25.54■■□□□ 1.68
CMTM4-201ENST00000330687 SMC5Q8IY18 1101 aa25.53■■□□□ 1.68
CMTM4-201ENST00000330687 ZSCAN23Q3MJ62 389 aa25.53■■□□□ 1.68
CMTM4-201ENST00000330687 ARHGEF12Q9NZN5 1544 aa25.52■■□□□ 1.68
CMTM4-201ENST00000330687 INSRP06213 1382 aa25.52■■□□□ 1.68
CMTM4-201ENST00000330687 SYCE3A1L190 88 aa25.51■■□□□ 1.68
CMTM4-201ENST00000330687 U2SURPO15042 1029 aaKnown RBP25.51■■□□□ 1.67
CMTM4-201ENST00000330687 PKP1Q13835 747 aa25.51■■□□□ 1.67
CMTM4-201ENST00000330687 CIZ1Q9ULV3 898 aaPredicted RBP25.51■■□□□ 1.67
CMTM4-201ENST00000330687 KLHL40Q2TBA0 621 aa25.5■■□□□ 1.67
CMTM4-201ENST00000330687 EXOSC9Q06265 439 aaKnown RBP25.5■■□□□ 1.67
CMTM4-201ENST00000330687 ZNF830Q96NB3 372 aaPredicted RBP25.5■■□□□ 1.67
CMTM4-201ENST00000330687 E9PCH4 1651 aa25.49■■□□□ 1.67
CMTM4-201ENST00000330687 APBB1O00213 710 aa25.49■■□□□ 1.67
CMTM4-201ENST00000330687 TRIM27P14373 513 aa25.49■■□□□ 1.67
CMTM4-201ENST00000330687 RUNDC1Q96C34 613 aa25.49■■□□□ 1.67
CMTM4-201ENST00000330687 BCL11BQ9C0K0 894 aaPredicted RBP25.49■■□□□ 1.67
CMTM4-201ENST00000330687 GPATCH8Q9UKJ3 1502 aaKnown RBP25.48■■□□□ 1.67
CMTM4-201ENST00000330687 PTMSP20962 102 aa25.48■■□□□ 1.67
CMTM4-201ENST00000330687 SPDYE4A6NLX3 237 aa25.47■■□□□ 1.67
CMTM4-201ENST00000330687 NOL7Q9UMY1 257 aaKnown RBP25.47■■□□□ 1.67
CMTM4-201ENST00000330687 MAPK8IP2Q13387 824 aaPredicted RBP25.47■■□□□ 1.67
CMTM4-201ENST00000330687 NOL8Q76FK4 1167 aaKnown RBP25.47■■□□□ 1.67
CMTM4-201ENST00000330687 TMEM57Q8N5G2 664 aa25.47■■□□□ 1.67
CMTM4-201ENST00000330687 NOB1Q9ULX3 412 aaKnown RBP25.47■■□□□ 1.67
CMTM4-201ENST00000330687 NINLQ9Y2I6 1382 aa25.46■■□□□ 1.67
CMTM4-201ENST00000330687 WDR62O43379 1518 aa25.46■■□□□ 1.67
CMTM4-201ENST00000330687 SMAP1Q8IYB5 467 aaPredicted RBP25.46■■□□□ 1.67
CMTM4-201ENST00000330687 ZKSCAN5Q9Y2L8 839 aa25.46■■□□□ 1.67
CMTM4-201ENST00000330687 BBXQ8WY36 941 aaPredicted RBP25.45■■□□□ 1.66
CMTM4-201ENST00000330687 TROQ12816 1431 aaPredicted RBP25.44■■□□□ 1.66
CMTM4-201ENST00000330687 C17orf53Q8N3J3 647 aaPredicted RBP25.44■■□□□ 1.66
CMTM4-201ENST00000330687 DDX19BQ9UMR2 479 aa25.44■■□□□ 1.66
CMTM4-201ENST00000330687 NUP153P49790 1475 aaKnown RBP25.44■■□□□ 1.66
CMTM4-201ENST00000330687 DYNC1I1O14576 645 aa25.44■■□□□ 1.66
CMTM4-201ENST00000330687 SSH1Q8WYL5 1049 aa25.44■■□□□ 1.66
CMTM4-201ENST00000330687 SNX21Q969T3 373 aa25.44■■□□□ 1.66
CMTM4-201ENST00000330687 CARD14Q9BXL6 1004 aa25.44■■□□□ 1.66
CMTM4-201ENST00000330687 CSPP1Q1MSJ5 1256 aa25.43■■□□□ 1.66
CMTM4-201ENST00000330687 SASS6Q6UVJ0 657 aa25.43■■□□□ 1.66
CMTM4-201ENST00000330687 MTHFSP49914 203 aa25.43■■□□□ 1.66
CMTM4-201ENST00000330687 A2MP01023 1474 aa25.42■■□□□ 1.66
CMTM4-201ENST00000330687 LAMC3Q9Y6N6 1575 aa25.42■■□□□ 1.66
CMTM4-201ENST00000330687 FGD1P98174 961 aa25.42■■□□□ 1.66
CMTM4-201ENST00000330687 RBM25P49756 843 aaKnown RBP25.42■■□□□ 1.66
CMTM4-201ENST00000330687 RTEL1-TNFRSF6BF6WH68 1400 aa25.42■■□□□ 1.66
CMTM4-201ENST00000330687 DDIT3P35638 169 aa25.41■■□□□ 1.66
CMTM4-201ENST00000330687 CHD1LQ86WJ1 897 aa25.41■■□□□ 1.66
CMTM4-201ENST00000330687 TBC1D9Q6ZT07 1266 aa25.41■■□□□ 1.66
CMTM4-201ENST00000330687 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.41■■□□□ 1.66
CMTM4-201ENST00000330687 ELL2O00472 640 aaPredicted RBP25.4■■□□□ 1.66
CMTM4-201ENST00000330687 WDR7Q9Y4E6 1490 aa25.4■■□□□ 1.66
CMTM4-201ENST00000330687 IQGAP2Q13576 1575 aa25.39■■□□□ 1.66
CMTM4-201ENST00000330687 CHGAP10645 457 aaKnown RBP25.38■■□□□ 1.65
CMTM4-201ENST00000330687 ATF7IPQ6VMQ6 1270 aa25.37■■□□□ 1.65
CMTM4-201ENST00000330687 MTERF4Q7Z6M4 381 aaKnown RBP25.37■■□□□ 1.65
CMTM4-201ENST00000330687 ZGPATQ8N5A5 531 aaKnown RBP25.37■■□□□ 1.65
CMTM4-201ENST00000330687 CCDC39Q9UFE4 941 aa25.37■■□□□ 1.65
CMTM4-201ENST00000330687 PPP4R3BQ5MIZ7 849 aa25.37■■□□□ 1.65
CMTM4-201ENST00000330687 URB2Q14146 1524 aaKnown RBP25.37■■□□□ 1.65
CMTM4-201ENST00000330687 CCDC94Q9BW85 323 aaPredicted RBP25.37■■□□□ 1.65
CMTM4-201ENST00000330687 PLB1Q6P1J6 1458 aa25.36■■□□□ 1.65
CMTM4-201ENST00000330687 ZNF500O60304 480 aaPredicted RBP25.36■■□□□ 1.65
CMTM4-201ENST00000330687 KIF2CQ99661 725 aa25.36■■□□□ 1.65
CMTM4-201ENST00000330687 CFAP53Q96M91 514 aa25.36■■□□□ 1.65
CMTM4-201ENST00000330687 KIF16BQ96L93 1317 aa25.35■■□□□ 1.65
CMTM4-201ENST00000330687 PIK3C2GO75747 1445 aa25.35■■□□□ 1.65
CMTM4-201ENST00000330687 KIAA2012Q0VF49 1180 aa25.35■■□□□ 1.65
CMTM4-201ENST00000330687 SLC12A5Q9H2X9 1139 aa25.35■■□□□ 1.65
CMTM4-201ENST00000330687 GPRASP1Q5JY77 1395 aa25.35■■□□□ 1.65
CMTM4-201ENST00000330687 ASXL1Q8IXJ9 1541 aa25.35■■□□□ 1.65
CMTM4-201ENST00000330687 CFAP70Q5T0N1 1121 aa25.34■■□□□ 1.65
CMTM4-201ENST00000330687 KDM5DQ9BY66 1539 aa25.34■■□□□ 1.65
CMTM4-201ENST00000330687 LMBRD1Q9NUN5 540 aa25.34■■□□□ 1.65
CMTM4-201ENST00000330687 NSFL1CQ9UNZ2 370 aaKnown RBP25.34■■□□□ 1.65
CMTM4-201ENST00000330687 TERF1P54274 439 aa25.33■■□□□ 1.64
CMTM4-201ENST00000330687 PDE4CQ08493 712 aa25.32■■□□□ 1.64
CMTM4-201ENST00000330687 HDAC1Q13547 482 aaPredicted RBP25.32■■□□□ 1.64
CMTM4-201ENST00000330687 TMEM63CQ9P1W3 806 aa25.32■■□□□ 1.64
CMTM4-201ENST00000330687 AK9Q5TCS8 1911 aa25.31■■□□□ 1.64
CMTM4-201ENST00000330687 NUCB2P80303 420 aa25.31■■□□□ 1.64
CMTM4-201ENST00000330687 WDR63Q8IWG1 891 aa25.31■■□□□ 1.64
CMTM4-201ENST00000330687 GPT2Q8TD30 523 aa25.31■■□□□ 1.64
CMTM4-201ENST00000330687 VIRMAQ69YN4 1812 aaKnown RBP25.31■■□□□ 1.64
CMTM4-201ENST00000330687 ZNF445P59923 1031 aa25.31■■□□□ 1.64
CMTM4-201ENST00000330687 NGEFQ8N5V2 710 aa25.31■■□□□ 1.64
CMTM4-201ENST00000330687 TTC12Q9H892 705 aaPredicted RBP25.31■■□□□ 1.64
CMTM4-201ENST00000330687 GDPD2Q9HCC8 539 aa25.31■■□□□ 1.64
CMTM4-201ENST00000330687 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP25.31■■□□□ 1.64
CMTM4-201ENST00000330687 NUCB1Q02818 461 aa25.3■■□□□ 1.64
CMTM4-201ENST00000330687 VGLL3A8MV65 326 aa25.3■■□□□ 1.64
CMTM4-201ENST00000330687 DMTNQ08495 405 aa25.3■■□□□ 1.64
CMTM4-201ENST00000330687 ZSCAN20P17040 1043 aaPredicted RBP25.29■■□□□ 1.64
CMTM4-201ENST00000330687 ADGRL2O95490 1459 aa25.28■■□□□ 1.64
CMTM4-201ENST00000330687 TRPM1Q7Z4N2 1603 aa25.27■■□□□ 1.64
CMTM4-201ENST00000330687 FAM135AQ9P2D6 1515 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms