RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CDC45O75419 566 aa17.07■□□□□ 0.32
COL7A1-201ENST00000328333 CALCOCO1Q9P1Z2 691 aa17.07■□□□□ 0.32
COL7A1-201ENST00000328333 TOP2AP11388 1531 aaKnown RBP17.07■□□□□ 0.32
COL7A1-201ENST00000328333 TRAK2O60296 914 aa17.07■□□□□ 0.32
COL7A1-201ENST00000328333 TXLNAP40222 546 aa17.07■□□□□ 0.32
COL7A1-201ENST00000328333 DACH1Q9UI36 760 aa17.07■□□□□ 0.32
COL7A1-201ENST00000328333 ZNF396Q96N95 335 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-201ENST00000328333 FRAT2O75474 233 aaPredicted RBP17.06■□□□□ 0.32
COL7A1-201ENST00000328333 MAP9Q49MG5 647 aa17.06■□□□□ 0.32
COL7A1-201ENST00000328333 SLC26A8Q96RN1 970 aa17.06■□□□□ 0.32
COL7A1-201ENST00000328333 IFIT2P09913 472 aaKnown RBP17.05■□□□□ 0.32
COL7A1-201ENST00000328333 GBP3Q9H0R5 595 aa17.05■□□□□ 0.32
COL7A1-201ENST00000328333 PRKRIP1Q9H875 184 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-201ENST00000328333 CBFA2T2O43439 604 aa17.05■□□□□ 0.32
COL7A1-201ENST00000328333 GIMAP7Q8NHV1 300 aa17.05■□□□□ 0.32
COL7A1-201ENST00000328333 GOLGA6L10A0A0M3HER8 536 aa17.04■□□□□ 0.32
COL7A1-201ENST00000328333 C9orf78Q9NZ63 289 aaPredicted RBP17.04■□□□□ 0.32
COL7A1-201ENST00000328333 MIA2Q96PC5 1412 aa17.04■□□□□ 0.32
COL7A1-201ENST00000328333 CIZ1Q9ULV3 898 aaPredicted RBP17.04■□□□□ 0.32
COL7A1-201ENST00000328333 G3V3G9 751 aa17.04■□□□□ 0.32
COL7A1-201ENST00000328333 SEPT7Q16181 437 aaKnown RBP17.04■□□□□ 0.32
COL7A1-201ENST00000328333 DCAF8Q5TAQ9 597 aa17.04■□□□□ 0.32
COL7A1-201ENST00000328333 RALYLQ86SE5 291 aaKnown RBP17.03■□□□□ 0.32
COL7A1-201ENST00000328333 LRRCC1Q9C099 1032 aa17.03■□□□□ 0.32
COL7A1-201ENST00000328333 BRD4O60885 1362 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-201ENST00000328333 STIM1Q13586 685 aa17.03■□□□□ 0.32
COL7A1-201ENST00000328333 MAGEC2Q9UBF1 373 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-201ENST00000328333 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.02■□□□□ 0.32
COL7A1-201ENST00000328333 DDX58O95786 925 aaKnown RBP17.02■□□□□ 0.31
COL7A1-201ENST00000328333 GBP2P32456 591 aaPredicted RBP17.02■□□□□ 0.31
COL7A1-201ENST00000328333 SART3Q15020 963 aaKnown RBP17.02■□□□□ 0.31
COL7A1-201ENST00000328333 EVC2Q86UK5 1308 aa17.02■□□□□ 0.31
COL7A1-201ENST00000328333 TRIM34Q9BYJ4 488 aa17.01■□□□□ 0.31
COL7A1-201ENST00000328333 POLR3GO15318 223 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-201ENST00000328333 ANKRD1Q15327 319 aa17.01■□□□□ 0.31
COL7A1-201ENST00000328333 LUZP1Q86V48 1076 aa17.01■□□□□ 0.31
COL7A1-201ENST00000328333 CRBNQ96SW2 442 aa17.01■□□□□ 0.31
COL7A1-201ENST00000328333 UQCRHLA0A096LP55 91 aa17■□□□□ 0.31
COL7A1-201ENST00000328333 UQCRHP07919 91 aa17■□□□□ 0.31
COL7A1-201ENST00000328333 ENOX2Q16206 610 aaKnown RBP17■□□□□ 0.31
COL7A1-201ENST00000328333 PDILTQ8N807 584 aa17■□□□□ 0.31
COL7A1-201ENST00000328333 PLEKHH2Q8IVE3 1493 aa17■□□□□ 0.31
COL7A1-201ENST00000328333 SMC2O95347 1197 aa17■□□□□ 0.31
COL7A1-201ENST00000328333 STAC3Q96MF2 364 aa17■□□□□ 0.31
COL7A1-201ENST00000328333 NFXL1Q6ZNB6 911 aa16.99■□□□□ 0.31
COL7A1-201ENST00000328333 AEBP1Q8IUX7 1158 aa16.99■□□□□ 0.31
COL7A1-201ENST00000328333 FEZ1Q99689 392 aa16.99■□□□□ 0.31
COL7A1-201ENST00000328333 CSB-PGBD3P0DP91 1061 aa16.99■□□□□ 0.31
COL7A1-201ENST00000328333 SHTN1A0MZ66 631 aa16.99■□□□□ 0.31
COL7A1-201ENST00000328333 FOXD4L6Q3SYB3 417 aaPredicted RBP16.98■□□□□ 0.31
COL7A1-201ENST00000328333 FOXD4L3Q6VB84 417 aaPredicted RBP16.98■□□□□ 0.31
COL7A1-201ENST00000328333 MICALCLQ6ZW33 695 aa16.98■□□□□ 0.31
COL7A1-201ENST00000328333 CCDC7Q96M83 1385 aa16.98■□□□□ 0.31
COL7A1-201ENST00000328333 SPATA24Q86W54 205 aa16.98■□□□□ 0.31
COL7A1-201ENST00000328333 SUPT6HQ7KZ85 1726 aaKnown RBP16.98■□□□□ 0.31
COL7A1-201ENST00000328333 ESPNB1AK53 854 aa16.97■□□□□ 0.31
COL7A1-201ENST00000328333 SOX12O15370 315 aa16.97■□□□□ 0.31
COL7A1-201ENST00000328333 CCDC146Q8IYE0 955 aa16.97■□□□□ 0.31
COL7A1-201ENST00000328333 WDR33Q9C0J8 1336 aaKnown RBP16.97■□□□□ 0.31
COL7A1-201ENST00000328333 CNTROBQ8N137 903 aa16.97■□□□□ 0.31
COL7A1-201ENST00000328333 AMPHP49418 695 aa16.97■□□□□ 0.31
COL7A1-201ENST00000328333 SYCP1Q15431 976 aa16.97■□□□□ 0.31
COL7A1-201ENST00000328333 ZNF330Q9Y3S2 320 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-201ENST00000328333 PPFIBP1Q86W92 1011 aa16.97■□□□□ 0.31
COL7A1-201ENST00000328333 CLASRPQ8N2M8 674 aaKnown RBP16.96■□□□□ 0.31
COL7A1-201ENST00000328333 MCM5P33992 734 aa16.96■□□□□ 0.31
COL7A1-201ENST00000328333 G3BP1Q13283 466 aaKnown RBP eCLIP16.96■□□□□ 0.31
COL7A1-201ENST00000328333 PAK3O75914 559 aaPredicted RBP16.96■□□□□ 0.31
COL7A1-201ENST00000328333 ZSCAN30Q86W11 494 aa16.96■□□□□ 0.31
COL7A1-201ENST00000328333 PDCL3Q9H2J4 239 aa16.96■□□□□ 0.31
COL7A1-201ENST00000328333 EXOC6Q8TAG9 804 aa16.96■□□□□ 0.31
COL7A1-201ENST00000328333 CCDC181Q5TID7 509 aa16.96■□□□□ 0.3
COL7A1-201ENST00000328333 IL27Q8NEV9 243 aa16.95■□□□□ 0.3
COL7A1-201ENST00000328333 GRPEL1Q9HAV7 217 aa16.95■□□□□ 0.3
COL7A1-201ENST00000328333 SOGA1O94964 1423 aa16.95■□□□□ 0.3
COL7A1-201ENST00000328333 C1orf141Q5JVX7 400 aa16.95■□□□□ 0.3
COL7A1-201ENST00000328333 WIZO95785 1651 aa16.95■□□□□ 0.3
COL7A1-201ENST00000328333 L3MBTL2Q969R5 705 aa16.95■□□□□ 0.3
COL7A1-201ENST00000328333 CCDC91Q7Z6B0 441 aa16.94■□□□□ 0.3
COL7A1-201ENST00000328333 PLEKHH1Q9ULM0 1364 aa16.94■□□□□ 0.3
COL7A1-201ENST00000328333 SAFB2Q14151 953 aaKnown RBP eCLIP16.94■□□□□ 0.3
COL7A1-201ENST00000328333 PLCD4Q9BRC7 762 aa16.94■□□□□ 0.3
COL7A1-201ENST00000328333 RAPGEF2Q9Y4G8 1499 aa16.94■□□□□ 0.3
COL7A1-201ENST00000328333 RBM33Q96EV2 1170 aaKnown RBP16.93■□□□□ 0.3
COL7A1-201ENST00000328333 POTEB2H3BUK9 544 aa16.93■□□□□ 0.3
COL7A1-201ENST00000328333 GTF2E1P29083 439 aaPredicted RBP16.93■□□□□ 0.3
COL7A1-201ENST00000328333 SLC4A3P48751 1232 aa16.93■□□□□ 0.3
COL7A1-201ENST00000328333 DHX57Q6P158 1386 aaKnown RBP16.93■□□□□ 0.3
COL7A1-201ENST00000328333 KIF3BO15066 747 aa16.93■□□□□ 0.3
COL7A1-201ENST00000328333 KIF21BO75037 1637 aa16.93■□□□□ 0.3
COL7A1-201ENST00000328333 CGNQ9P2M7 1197 aaKnown RBP16.93■□□□□ 0.3
COL7A1-201ENST00000328333 COG6Q9Y2V7 657 aa16.93■□□□□ 0.3
COL7A1-201ENST00000328333 CFAP45Q9UL16 551 aa16.92■□□□□ 0.3
COL7A1-201ENST00000328333 GNAI1P63096 354 aa16.92■□□□□ 0.3
COL7A1-201ENST00000328333 VPS37DQ86XT2 251 aa16.92■□□□□ 0.3
COL7A1-201ENST00000328333 CTDP1Q9Y5B0 961 aaPredicted RBP16.92■□□□□ 0.3
COL7A1-201ENST00000328333 CRACR2AQ9BSW2 395 aa16.92■□□□□ 0.3
COL7A1-201ENST00000328333 CCAR1Q8IX12 1150 aaKnown RBP16.92■□□□□ 0.3
COL7A1-201ENST00000328333 COG3Q96JB2 828 aa16.92■□□□□ 0.3
COL7A1-201ENST00000328333 RUNDC1Q96C34 613 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms