RNA–Protein interactions for RNA: ENST00000318266.9

PTPRA-202, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRA, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-202ENST00000318266 AGLP35573 1532 aa12.3□□□□□ -0.44
PTPRA-202ENST00000318266 PLA2R1Q13018 1463 aa12.29□□□□□ -0.44
PTPRA-202ENST00000318266 TRAK2O60296 914 aa12.29□□□□□ -0.44
PTPRA-202ENST00000318266 PDE3AQ14432 1141 aa12.29□□□□□ -0.44
PTPRA-202ENST00000318266 ZMYND15Q9H091 742 aa12.29□□□□□ -0.44
PTPRA-202ENST00000318266 NLRP1Q9C000 1473 aa12.28□□□□□ -0.44
PTPRA-202ENST00000318266 ATP10AO60312 1499 aa12.28□□□□□ -0.44
PTPRA-202ENST00000318266 PRDM15P57071 1507 aaPredicted RBP12.27□□□□□ -0.45
PTPRA-202ENST00000318266 CLCN1P35523 988 aa12.27□□□□□ -0.45
PTPRA-202ENST00000318266 WWC1Q8IX03 1113 aa12.27□□□□□ -0.45
PTPRA-202ENST00000318266 FSD2A1L4K1 749 aa12.26□□□□□ -0.45
PTPRA-202ENST00000318266 MYH16Q9H6N6 1097 aa12.26□□□□□ -0.45
PTPRA-202ENST00000318266 CDC42BPAQ5VT25 1732 aa12.26□□□□□ -0.45
PTPRA-202ENST00000318266 MYO5CQ9NQX4 1742 aa12.26□□□□□ -0.45
PTPRA-202ENST00000318266 PMFBP1Q8TBY8 1022 aa12.25□□□□□ -0.45
PTPRA-202ENST00000318266 C22orf23Q9BZE7 217 aa12.25□□□□□ -0.45
PTPRA-202ENST00000318266 SHANK2Q9UPX8 1470 aa12.24□□□□□ -0.45
PTPRA-202ENST00000318266 ERBB4Q15303 1308 aa12.24□□□□□ -0.45
PTPRA-202ENST00000318266 RARSP54136 660 aaKnown RBP12.24□□□□□ -0.45
PTPRA-202ENST00000318266 CHMP5Q9NZZ3 219 aa12.24□□□□□ -0.45
PTPRA-202ENST00000318266 STRCQ7RTU9 1775 aa12.24□□□□□ -0.45
PTPRA-202ENST00000318266 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.24□□□□□ -0.45
PTPRA-202ENST00000318266 GRPEL1Q9HAV7 217 aa12.24□□□□□ -0.45
PTPRA-202ENST00000318266 FOXD4L1Q9NU39 408 aa12.24□□□□□ -0.45
PTPRA-202ENST00000318266 CDCA8Q53HL2 280 aa12.23□□□□□ -0.45
PTPRA-202ENST00000318266 TRIM44Q96DX7 344 aaPredicted RBP12.23□□□□□ -0.45
PTPRA-202ENST00000318266 ESPNB1AK53 854 aa12.22□□□□□ -0.45
PTPRA-202ENST00000318266 MRE11P49959 708 aa12.22□□□□□ -0.45
PTPRA-202ENST00000318266 RWDD1Q9H446 243 aaPredicted RBP12.22□□□□□ -0.45
PTPRA-202ENST00000318266 ASXL1Q8IXJ9 1541 aa12.22□□□□□ -0.45
PTPRA-202ENST00000318266 PLCH2O75038 1416 aa12.21□□□□□ -0.45
PTPRA-202ENST00000318266 NPATQ14207 1427 aa12.21□□□□□ -0.45
PTPRA-202ENST00000318266 PIK3C2GO75747 1445 aa12.21□□□□□ -0.45
PTPRA-202ENST00000318266 ZNF142P52746 1687 aaPredicted RBP12.21□□□□□ -0.45
PTPRA-202ENST00000318266 HSCBQ8IWL3 235 aa12.21□□□□□ -0.46
PTPRA-202ENST00000318266 CARD14Q9BXL6 1004 aa12.21□□□□□ -0.46
PTPRA-202ENST00000318266 FTSJ3Q8IY81 847 aaKnown RBP12.2□□□□□ -0.46
PTPRA-202ENST00000318266 ZNF518AQ6AHZ1 1483 aa12.2□□□□□ -0.46
PTPRA-202ENST00000318266 TCP11L2Q8N4U5 519 aa12.2□□□□□ -0.46
PTPRA-202ENST00000318266 CCDC141Q6ZP82 1450 aa12.2□□□□□ -0.46
PTPRA-202ENST00000318266 RRP9O43818 475 aaKnown RBP12.2□□□□□ -0.46
PTPRA-202ENST00000318266 GAS2L3Q86XJ1 694 aa12.19□□□□□ -0.46
PTPRA-202ENST00000318266 LTBP4Q8N2S1 1624 aa12.19□□□□□ -0.46
PTPRA-202ENST00000318266 MLH3Q9UHC1 1453 aa12.18□□□□□ -0.46
PTPRA-202ENST00000318266 VIRMAQ69YN4 1812 aaKnown RBP12.17□□□□□ -0.46
PTPRA-202ENST00000318266 DDX11L8A8MPP1 907 aa12.16□□□□□ -0.46
PTPRA-202ENST00000318266 TSR2Q969E8 191 aaKnown RBP12.16□□□□□ -0.46
PTPRA-202ENST00000318266 CFAP70Q5T0N1 1121 aa12.16□□□□□ -0.46
PTPRA-202ENST00000318266 MORC1Q86VD1 984 aa12.16□□□□□ -0.46
PTPRA-202ENST00000318266 ITPRIPQ8IWB1 547 aa12.16□□□□□ -0.46
PTPRA-202ENST00000318266 TNPO1Q92973 898 aaKnown RBP12.16□□□□□ -0.46
PTPRA-202ENST00000318266 HSP90AB1P08238 724 aaKnown RBP12.16□□□□□ -0.46
PTPRA-202ENST00000318266 NINLQ9Y2I6 1382 aa12.16□□□□□ -0.46
PTPRA-202ENST00000318266 SIGLEC1Q9BZZ2 1709 aa12.16□□□□□ -0.46
PTPRA-202ENST00000318266 C3P01024 1663 aa12.15□□□□□ -0.46
PTPRA-202ENST00000318266 MVPQ14764 893 aaKnown RBP12.15□□□□□ -0.46
PTPRA-202ENST00000318266 EIF2AK4Q9P2K8 1649 aaKnown RBP12.15□□□□□ -0.46
PTPRA-202ENST00000318266 SYCP2Q9BX26 1530 aa12.15□□□□□ -0.46
PTPRA-202ENST00000318266 RUNDC1Q96C34 613 aa12.15□□□□□ -0.47
PTPRA-202ENST00000318266 DIP2CQ9Y2E4 1556 aa12.14□□□□□ -0.47
PTPRA-202ENST00000318266 DZIP1LQ8IYY4 767 aaKnown RBP12.14□□□□□ -0.47
PTPRA-202ENST00000318266 SMC4Q9NTJ3 1288 aa12.14□□□□□ -0.47
PTPRA-202ENST00000318266 ARID3AQ99856 593 aa12.14□□□□□ -0.47
PTPRA-202ENST00000318266 ZNF692Q9BU19 519 aaPredicted RBP12.14□□□□□ -0.47
PTPRA-202ENST00000318266 ZKSCAN2Q63HK3 967 aa12.13□□□□□ -0.47
PTPRA-202ENST00000318266 LNPKQ9C0E8 428 aa12.13□□□□□ -0.47
PTPRA-202ENST00000318266 TRAPPC8Q9Y2L5 1435 aa12.13□□□□□ -0.47
PTPRA-202ENST00000318266 SAMD9LQ8IVG5 1584 aa12.13□□□□□ -0.47
PTPRA-202ENST00000318266 SCAF11Q99590 1463 aaKnown RBP12.13□□□□□ -0.47
PTPRA-202ENST00000318266 LAMC1P11047 1609 aa12.13□□□□□ -0.47
PTPRA-202ENST00000318266 RSPH4AQ5TD94 716 aa12.13□□□□□ -0.47
PTPRA-202ENST00000318266 RTEL1-TNFRSF6BF6WH68 1400 aa12.12□□□□□ -0.47
PTPRA-202ENST00000318266 RAPGEF3O95398 923 aa12.12□□□□□ -0.47
PTPRA-202ENST00000318266 RBM10P98175 930 aaKnown RBP12.12□□□□□ -0.47
PTPRA-202ENST00000318266 KIAA1211Q6ZU35 1233 aa12.12□□□□□ -0.47
PTPRA-202ENST00000318266 U2AF1L5P0DN76 240 aaPredicted RBP12.12□□□□□ -0.47
PTPRA-202ENST00000318266 MTHFSP49914 203 aa12.12□□□□□ -0.47
PTPRA-202ENST00000318266 U2AF1Q01081 240 aaKnown RBP eCLIP12.12□□□□□ -0.477e-6■■■■□ 20
PTPRA-202ENST00000318266 SYNMO15061 1565 aa12.12□□□□□ -0.47
PTPRA-202ENST00000318266 SLC12A5Q9H2X9 1139 aa12.11□□□□□ -0.47
PTPRA-202ENST00000318266 ARHGAP5Q13017 1502 aa12.11□□□□□ -0.47
PTPRA-202ENST00000318266 CD2BP2O95400 341 aaKnown RBP12.11□□□□□ -0.47
PTPRA-202ENST00000318266 NGEFQ8N5V2 710 aa12.11□□□□□ -0.47
PTPRA-202ENST00000318266 GBP4Q96PP9 640 aa12.11□□□□□ -0.47
PTPRA-202ENST00000318266 SCAPERQ9BY12 1400 aa12.1□□□□□ -0.47
PTPRA-202ENST00000318266 ARHGEF5Q12774 1597 aa12.1□□□□□ -0.47
PTPRA-202ENST00000318266 TRIM27P14373 513 aa12.1□□□□□ -0.47
PTPRA-202ENST00000318266 RBM42Q9BTD8 480 aaKnown RBP12.1□□□□□ -0.47
PTPRA-202ENST00000318266 EFCAB2Q5VUJ9 269 aa12.1□□□□□ -0.47
PTPRA-202ENST00000318266 PREX2Q70Z35 1606 aa12.1□□□□□ -0.47
PTPRA-202ENST00000318266 SENP3Q9H4L4 574 aaPredicted RBP12.1□□□□□ -0.47
PTPRA-202ENST00000318266 NPC1L1Q9UHC9 1359 aa12.1□□□□□ -0.47
PTPRA-202ENST00000318266 CPS1P31327 1500 aa12.09□□□□□ -0.47
PTPRA-202ENST00000318266 NCLP19338 710 aaKnown RBP12.09□□□□□ -0.47
PTPRA-202ENST00000318266 EXOSC9Q06265 439 aaKnown RBP12.09□□□□□ -0.47
PTPRA-202ENST00000318266 PPP6R1Q9UPN7 881 aa12.09□□□□□ -0.47
PTPRA-202ENST00000318266 NASPP49321 788 aaPredicted RBP12.09□□□□□ -0.47
PTPRA-202ENST00000318266 SSFA2P28290 1259 aa12.08□□□□□ -0.48
PTPRA-202ENST00000318266 WDR63Q8IWG1 891 aa12.08□□□□□ -0.48
PTPRA-202ENST00000318266 CHGAP10645 457 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms