RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 HSP90AA1P07900 732 aaKnown RBP13.36□□□□□ -0.27
COL3A1-202ENST00000317840 PDZRN3Q9UPQ7 1066 aa13.36□□□□□ -0.27
COL3A1-202ENST00000317840 TNNQ9UQP3 1299 aa13.36□□□□□ -0.27
COL3A1-202ENST00000317840 RARSP54136 660 aaKnown RBP13.35□□□□□ -0.27
COL3A1-202ENST00000317840 PIK3C2GO75747 1445 aa13.35□□□□□ -0.27
COL3A1-202ENST00000317840 NSD3Q9BZ95 1437 aa13.34□□□□□ -0.27
COL3A1-202ENST00000317840 ZKSCAN2Q63HK3 967 aa13.34□□□□□ -0.27
COL3A1-202ENST00000317840 LMOD2Q6P5Q4 547 aa13.34□□□□□ -0.27
COL3A1-202ENST00000317840 TSR2Q969E8 191 aaKnown RBP13.34□□□□□ -0.27
COL3A1-202ENST00000317840 CFAP65Q6ZU64 1925 aaKnown RBP13.34□□□□□ -0.27
COL3A1-202ENST00000317840 GGNBP2Q9H3C7 697 aa13.33□□□□□ -0.28
COL3A1-202ENST00000317840 TTC37Q6PGP7 1564 aa13.33□□□□□ -0.28
COL3A1-202ENST00000317840 PCDHB15Q9Y5E8 787 aa13.33□□□□□ -0.28
COL3A1-202ENST00000317840 DZIP1LQ8IYY4 767 aaKnown RBP13.32□□□□□ -0.28
COL3A1-202ENST00000317840 PREX2Q70Z35 1606 aa13.32□□□□□ -0.28
COL3A1-202ENST00000317840 RLBP1P12271 317 aa13.32□□□□□ -0.28
COL3A1-202ENST00000317840 CEBPAP49715 358 aaPredicted RBP13.32□□□□□ -0.28
COL3A1-202ENST00000317840 PRAM1Q96QH2 718 aa13.31□□□□□ -0.28
COL3A1-202ENST00000317840 TRMT2AQ8IZ69 625 aaKnown RBP13.31□□□□□ -0.28
COL3A1-202ENST00000317840 CDC42BPBQ9Y5S2 1711 aa13.31□□□□□ -0.28
COL3A1-202ENST00000317840 MAST1Q9Y2H9 1570 aa13.31□□□□□ -0.28
COL3A1-202ENST00000317840 E9PCH4 1651 aa13.31□□□□□ -0.28
COL3A1-202ENST00000317840 HDGFL2Q7Z4V5 671 aaPredicted RBP13.3□□□□□ -0.28
COL3A1-202ENST00000317840 EVC2Q86UK5 1308 aa13.3□□□□□ -0.28
COL3A1-202ENST00000317840 EXOSC9Q06265 439 aaKnown RBP13.29□□□□□ -0.28
COL3A1-202ENST00000317840 TXNDC2Q86VQ3 553 aa13.29□□□□□ -0.28
COL3A1-202ENST00000317840 WDR63Q8IWG1 891 aa13.29□□□□□ -0.28
COL3A1-202ENST00000317840 HSCBQ8IWL3 235 aa13.29□□□□□ -0.28
COL3A1-202ENST00000317840 HDGFP51858 240 aaKnown RBP13.28□□□□□ -0.28
COL3A1-202ENST00000317840 NPC1L1Q9UHC9 1359 aa13.28□□□□□ -0.28
COL3A1-202ENST00000317840 WAPLQ7Z5K2 1190 aa13.28□□□□□ -0.28
COL3A1-202ENST00000317840 ATP10AO60312 1499 aa13.27□□□□□ -0.28
COL3A1-202ENST00000317840 MVPQ14764 893 aaKnown RBP13.27□□□□□ -0.29
COL3A1-202ENST00000317840 L1TD1Q5T7N2 865 aaKnown RBP13.27□□□□□ -0.29
COL3A1-202ENST00000317840 NINLQ9Y2I6 1382 aa13.27□□□□□ -0.29
COL3A1-202ENST00000317840 NOS1P29475 1434 aa13.27□□□□□ -0.29
COL3A1-202ENST00000317840 SLC26A8Q96RN1 970 aa13.27□□□□□ -0.29
COL3A1-202ENST00000317840 C22orf23Q9BZE7 217 aa13.27□□□□□ -0.29
COL3A1-202ENST00000317840 TERF2IPQ9NYB0 399 aa13.26□□□□□ -0.29
COL3A1-202ENST00000317840 UNC13BO14795 1591 aa13.26□□□□□ -0.29
COL3A1-202ENST00000317840 RIPK4P57078 832 aa13.26□□□□□ -0.29
COL3A1-202ENST00000317840 TBC1D2Q9BYX2 928 aa13.26□□□□□ -0.29
COL3A1-202ENST00000317840 POLR3AO14802 1390 aaPredicted RBP13.25□□□□□ -0.29
COL3A1-202ENST00000317840 ELL2O00472 640 aaPredicted RBP13.25□□□□□ -0.29
COL3A1-202ENST00000317840 IQGAP3Q86VI3 1631 aa13.25□□□□□ -0.29
COL3A1-202ENST00000317840 IPO8O15397 1037 aaKnown RBP13.25□□□□□ -0.29
COL3A1-202ENST00000317840 DDX19BQ9UMR2 479 aa13.25□□□□□ -0.29
COL3A1-202ENST00000317840 HSP90AB1P08238 724 aaKnown RBP13.25□□□□□ -0.29
COL3A1-202ENST00000317840 AAMPQ13685 434 aa13.25□□□□□ -0.29
COL3A1-202ENST00000317840 LNPKQ9C0E8 428 aa13.25□□□□□ -0.29
COL3A1-202ENST00000317840 GOLGA6L3A6NEY3 463 aa13.24□□□□□ -0.29
COL3A1-202ENST00000317840 SLC52A1Q9NWF4 448 aa13.24□□□□□ -0.29
COL3A1-202ENST00000317840 FOXD4L1Q9NU39 408 aa13.24□□□□□ -0.29
COL3A1-202ENST00000317840 EID1Q9Y6B2 187 aa13.23□□□□□ -0.29
COL3A1-202ENST00000317840 CABP1Q9NZU7 370 aa13.23□□□□□ -0.29
COL3A1-202ENST00000317840 NOB1Q9ULX3 412 aaKnown RBP13.23□□□□□ -0.29
COL3A1-202ENST00000317840 SSH1Q8WYL5 1049 aa13.22□□□□□ -0.29
COL3A1-202ENST00000317840 TBC1D32Q96NH3 1257 aa13.22□□□□□ -0.29
COL3A1-202ENST00000317840 ZCCHC11Q5TAX3 1644 aaKnown RBP13.22□□□□□ -0.29
COL3A1-202ENST00000317840 MYO5CQ9NQX4 1742 aa13.22□□□□□ -0.29
COL3A1-202ENST00000317840 FBLN1P23142 703 aa13.22□□□□□ -0.29
COL3A1-202ENST00000317840 SYNMO15061 1565 aa13.21□□□□□ -0.29
COL3A1-202ENST00000317840 UGGT1Q9NYU2 1555 aa13.21□□□□□ -0.29
COL3A1-202ENST00000317840 ERVK-7P63135 1459 aa13.21□□□□□ -0.29
COL3A1-202ENST00000317840 C14orf93Q9H972 538 aaKnown RBP13.21□□□□□ -0.29
COL3A1-202ENST00000317840 TRIM27P14373 513 aa13.21□□□□□ -0.29
COL3A1-202ENST00000317840 TMPOP42166 694 aaKnown RBP13.21□□□□□ -0.3
COL3A1-202ENST00000317840 ATF7IPQ6VMQ6 1270 aa13.21□□□□□ -0.3
COL3A1-202ENST00000317840 RBM33Q96EV2 1170 aaKnown RBP13.21□□□□□ -0.3
COL3A1-202ENST00000317840 USP19O94966 1318 aa13.21□□□□□ -0.3
COL3A1-202ENST00000317840 ZNF518AQ6AHZ1 1483 aa13.21□□□□□ -0.3
COL3A1-202ENST00000317840 DIAPH1O60610 1272 aaKnown RBP13.2□□□□□ -0.3
COL3A1-202ENST00000317840 ANKRD45Q5TZF3 282 aa13.2□□□□□ -0.3
COL3A1-202ENST00000317840 CDK19Q9BWU1 502 aa13.2□□□□□ -0.3
COL3A1-202ENST00000317840 CHMP5Q9NZZ3 219 aa13.2□□□□□ -0.3
COL3A1-202ENST00000317840 PLXNC1O60486 1568 aa13.2□□□□□ -0.3
COL3A1-202ENST00000317840 NUTM2GQ5VZR2 741 aa13.19□□□□□ -0.3
COL3A1-202ENST00000317840 TMEM57Q8N5G2 664 aa13.19□□□□□ -0.3
COL3A1-202ENST00000317840 NGDNQ8NEJ9 315 aaKnown RBP13.19□□□□□ -0.3
COL3A1-202ENST00000317840 PNNQ9H307 717 aaKnown RBP13.19□□□□□ -0.3
COL3A1-202ENST00000317840 LAMC1P11047 1609 aa13.19□□□□□ -0.3
COL3A1-202ENST00000317840 RTEL1-TNFRSF6BF6WH68 1400 aa13.19□□□□□ -0.3
COL3A1-202ENST00000317840 LTV1Q96GA3 475 aaPredicted RBP13.19□□□□□ -0.3
COL3A1-202ENST00000317840 NAP1L5Q96NT1 182 aaPredicted RBP13.19□□□□□ -0.3
COL3A1-202ENST00000317840 HMOX1P09601 288 aa13.18□□□□□ -0.3
COL3A1-202ENST00000317840 PTPRTO14522 1441 aa13.18□□□□□ -0.3
COL3A1-202ENST00000317840 TRPM2O94759 1503 aa13.18□□□□□ -0.3
COL3A1-202ENST00000317840 MADDQ8WXG6 1647 aa13.18□□□□□ -0.3
COL3A1-202ENST00000317840 C1orf115Q9H7X2 142 aa13.18□□□□□ -0.3
COL3A1-202ENST00000317840 ATP7AQ04656 1500 aa13.18□□□□□ -0.3
COL3A1-202ENST00000317840 MCM4P33991 863 aa13.17□□□□□ -0.3
COL3A1-202ENST00000317840 TRIM44Q96DX7 344 aaPredicted RBP13.17□□□□□ -0.3
COL3A1-202ENST00000317840 APBB1O00213 710 aa13.17□□□□□ -0.3
COL3A1-202ENST00000317840 TRAK2O60296 914 aa13.17□□□□□ -0.3
COL3A1-202ENST00000317840 ABCC1P33527 1531 aa13.16□□□□□ -0.3
COL3A1-202ENST00000317840 UHRF1BP1LA0JNW5 1464 aa13.16□□□□□ -0.3
COL3A1-202ENST00000317840 KIF16BQ96L93 1317 aa13.16□□□□□ -0.3
COL3A1-202ENST00000317840 KDM5AP29375 1690 aaKnown RBP13.16□□□□□ -0.3
COL3A1-202ENST00000317840 FAM43AQ8N2R8 423 aa13.16□□□□□ -0.3
COL3A1-202ENST00000317840 YEATS2Q9ULM3 1422 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms