RNA–Protein interactions for RNA: ENST00000317716.13

CDHR3-201, Transcript of cadherin related family member 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDHR3, Length 3,813 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-201ENST00000317716 ANKRD45Q5TZF3 282 aa9.4□□□□□ -0.9
CDHR3-201ENST00000317716 CGNL1Q0VF96 1302 aa9.4□□□□□ -0.9
CDHR3-201ENST00000317716 SAMD9LQ8IVG5 1584 aa9.4□□□□□ -0.9
CDHR3-201ENST00000317716 NASPP49321 788 aaPredicted RBP9.4□□□□□ -0.9
CDHR3-201ENST00000317716 CDC42BPAQ5VT25 1732 aa9.4□□□□□ -0.91
CDHR3-201ENST00000317716 MCTP1Q6DN14 999 aa9.4□□□□□ -0.91
CDHR3-201ENST00000317716 HFM1A2PYH4 1435 aa9.39□□□□□ -0.91
CDHR3-201ENST00000317716 IDI1Q13907 227 aa9.39□□□□□ -0.91
CDHR3-201ENST00000317716 IGHDP01880 384 aa9.39□□□□□ -0.91
CDHR3-201ENST00000317716 TBC1D2Q9BYX2 928 aa9.39□□□□□ -0.91
CDHR3-201ENST00000317716 DHX29Q7Z478 1369 aaKnown RBP9.39□□□□□ -0.91
CDHR3-201ENST00000317716 E9PSI1 815 aa9.39□□□□□ -0.91
CDHR3-201ENST00000317716 CCDC144AA2RUR9 1427 aa9.39□□□□□ -0.91
CDHR3-201ENST00000317716 ITSN2Q9NZM3 1697 aa9.39□□□□□ -0.91
CDHR3-201ENST00000317716 C8orf34Q49A92 452 aa9.38□□□□□ -0.91
CDHR3-201ENST00000317716 CAVIN1Q6NZI2 390 aaKnown RBP9.38□□□□□ -0.91
CDHR3-201ENST00000317716 A2MP01023 1474 aa9.38□□□□□ -0.91
CDHR3-201ENST00000317716 LMOD2Q6P5Q4 547 aa9.38□□□□□ -0.91
CDHR3-201ENST00000317716 RRP9O43818 475 aaKnown RBP9.38□□□□□ -0.91
CDHR3-201ENST00000317716 SRPK2P78362 688 aaKnown RBP9.38□□□□□ -0.91
CDHR3-201ENST00000317716 POGZQ7Z3K3 1410 aa9.37□□□□□ -0.91
CDHR3-201ENST00000317716 TXNDC2Q86VQ3 553 aa9.37□□□□□ -0.91
CDHR3-201ENST00000317716 MBD5Q9P267 1494 aa9.37□□□□□ -0.91
CDHR3-201ENST00000317716 ZHX1Q9UKY1 873 aaPredicted RBP9.37□□□□□ -0.91
CDHR3-201ENST00000317716 CDC42BPBQ9Y5S2 1711 aa9.37□□□□□ -0.91
CDHR3-201ENST00000317716 KIAA2012Q0VF49 1180 aa9.37□□□□□ -0.91
CDHR3-201ENST00000317716 EID1Q9Y6B2 187 aa9.36□□□□□ -0.91
CDHR3-201ENST00000317716 PPP2R1AP30153 589 aa9.36□□□□□ -0.91
CDHR3-201ENST00000317716 DRC7Q8IY82 874 aa9.36□□□□□ -0.91
CDHR3-201ENST00000317716 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.36□□□□□ -0.91
CDHR3-201ENST00000317716 CFAP70Q5T0N1 1121 aa9.36□□□□□ -0.91
CDHR3-201ENST00000317716 DIP2BQ9P265 1576 aa9.36□□□□□ -0.91
CDHR3-201ENST00000317716 C1orf115Q9H7X2 142 aa9.35□□□□□ -0.91
CDHR3-201ENST00000317716 KDM6BO15054 1643 aa9.35□□□□□ -0.91
CDHR3-201ENST00000317716 CASC1Q6TDU7 716 aa9.35□□□□□ -0.91
CDHR3-201ENST00000317716 KIAA1107Q9UPP5 1409 aa9.35□□□□□ -0.91
CDHR3-201ENST00000317716 TSR2Q969E8 191 aaKnown RBP9.35□□□□□ -0.91
CDHR3-201ENST00000317716 XPCQ01831 940 aaPredicted RBP9.34□□□□□ -0.91
CDHR3-201ENST00000317716 CHMP3Q9Y3E7 222 aa9.34□□□□□ -0.91
CDHR3-201ENST00000317716 ATP7AQ04656 1500 aa9.34□□□□□ -0.91
CDHR3-201ENST00000317716 ZKSCAN2Q63HK3 967 aa9.34□□□□□ -0.91
CDHR3-201ENST00000317716 TNNQ9UQP3 1299 aa9.34□□□□□ -0.91
CDHR3-201ENST00000317716 CHAF1AQ13111 956 aaPredicted RBP9.34□□□□□ -0.91
CDHR3-201ENST00000317716 DZIP1LQ8IYY4 767 aaKnown RBP9.33□□□□□ -0.92
CDHR3-201ENST00000317716 PREX2Q70Z35 1606 aa9.33□□□□□ -0.92
CDHR3-201ENST00000317716 NEO1Q92859 1461 aa9.33□□□□□ -0.92
CDHR3-201ENST00000317716 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.33□□□□□ -0.92
CDHR3-201ENST00000317716 UQCRHLA0A096LP55 91 aa9.32□□□□□ -0.92
CDHR3-201ENST00000317716 PRPF40AO75400 957 aaKnown RBP9.32□□□□□ -0.92
CDHR3-201ENST00000317716 UQCRHP07919 91 aa9.32□□□□□ -0.92
CDHR3-201ENST00000317716 DUSP27Q5VZP5 1158 aa9.32□□□□□ -0.92
CDHR3-201ENST00000317716 ABCC1P33527 1531 aa9.32□□□□□ -0.92
CDHR3-201ENST00000317716 MINK1Q8N4C8 1332 aaPredicted RBP9.32□□□□□ -0.92
CDHR3-201ENST00000317716 ZMYM3Q14202 1370 aa9.32□□□□□ -0.92
CDHR3-201ENST00000317716 TCP11L2Q8N4U5 519 aa9.31□□□□□ -0.92
CDHR3-201ENST00000317716 ROCK1Q13464 1354 aa9.31□□□□□ -0.92
CDHR3-201ENST00000317716 ATP10AO60312 1499 aa9.31□□□□□ -0.92
CDHR3-201ENST00000317716 ABCA9Q8IUA7 1624 aa9.31□□□□□ -0.92
CDHR3-201ENST00000317716 TCOF1Q13428 1488 aaKnown RBP9.31□□□□□ -0.92
CDHR3-201ENST00000317716 TPM2P07951 284 aa9.3□□□□□ -0.92
CDHR3-201ENST00000317716 SKOR2Q2VWA4 1001 aaPredicted RBP9.3□□□□□ -0.92
CDHR3-201ENST00000317716 DNMT1P26358 1616 aaKnown RBP9.3□□□□□ -0.92
CDHR3-201ENST00000317716 ANKRD30BQ9BXX2 1392 aa9.3□□□□□ -0.92
CDHR3-201ENST00000317716 ZFYVE16Q7Z3T8 1539 aa9.3□□□□□ -0.92
CDHR3-201ENST00000317716 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.3□□□□□ -0.92
CDHR3-201ENST00000317716 IPO8O15397 1037 aaKnown RBP9.3□□□□□ -0.92
CDHR3-201ENST00000317716 SLFN5Q08AF3 891 aa9.3□□□□□ -0.92
CDHR3-201ENST00000317716 ZNF771Q7L3S4 317 aaPredicted RBP9.3□□□□□ -0.92
CDHR3-201ENST00000317716 CLCN1P35523 988 aa9.29□□□□□ -0.92
CDHR3-201ENST00000317716 SLC4A10Q6U841 1118 aa9.29□□□□□ -0.92
CDHR3-201ENST00000317716 NCKAP5LQ9HCH0 1330 aa9.29□□□□□ -0.92
CDHR3-201ENST00000317716 TRIM6-TRIM34B2RNG4 842 aa9.29□□□□□ -0.92
CDHR3-201ENST00000317716 SSFA2P28290 1259 aa9.29□□□□□ -0.92
CDHR3-201ENST00000317716 ADGRF5Q8IZF2 1346 aa9.29□□□□□ -0.92
CDHR3-201ENST00000317716 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.29□□□□□ -0.92
CDHR3-201ENST00000317716 ZNF592Q92610 1267 aa9.29□□□□□ -0.92
CDHR3-201ENST00000317716 TNPO1Q92973 898 aaKnown RBP9.29□□□□□ -0.92
CDHR3-201ENST00000317716 HDGFP51858 240 aaKnown RBP9.28□□□□□ -0.92
CDHR3-201ENST00000317716 SPINK5Q9NQ38 1064 aaPredicted RBP9.28□□□□□ -0.92
CDHR3-201ENST00000317716 VGFO15240 615 aaPredicted RBP9.28□□□□□ -0.92
CDHR3-201ENST00000317716 THEMISQ8N1K5 641 aaPredicted RBP9.28□□□□□ -0.92
CDHR3-201ENST00000317716 GOLGA6L4A6NEF3 574 aa9.28□□□□□ -0.92
CDHR3-201ENST00000317716 CBX1P83916 185 aa9.28□□□□□ -0.92
CDHR3-201ENST00000317716 EXOSC9Q06265 439 aaKnown RBP9.28□□□□□ -0.92
CDHR3-201ENST00000317716 NAP1L2Q9ULW6 460 aaPredicted RBP9.28□□□□□ -0.92
CDHR3-201ENST00000317716 PCDHB15Q9Y5E8 787 aa9.28□□□□□ -0.92
CDHR3-201ENST00000317716 ERBINQ96RT1 1412 aa9.28□□□□□ -0.92
CDHR3-201ENST00000317716 IGSF3O75054 1194 aa9.27□□□□□ -0.92
CDHR3-201ENST00000317716 KCNJ4P48050 445 aa9.27□□□□□ -0.92
CDHR3-201ENST00000317716 WAPLQ7Z5K2 1190 aa9.27□□□□□ -0.93
CDHR3-201ENST00000317716 DUOX2Q9NRD8 1548 aa9.27□□□□□ -0.93
CDHR3-201ENST00000317716 FAM177BA6PVY3 158 aa9.27□□□□□ -0.93
CDHR3-201ENST00000317716 RNF123Q5XPI4 1314 aa9.27□□□□□ -0.93
CDHR3-201ENST00000317716 CCDC173Q0VFZ6 552 aa9.26□□□□□ -0.93
CDHR3-201ENST00000317716 ZSCAN30Q86W11 494 aa9.26□□□□□ -0.93
CDHR3-201ENST00000317716 RBM42Q9BTD8 480 aaKnown RBP9.26□□□□□ -0.93
CDHR3-201ENST00000317716 ST18O60284 1047 aa9.26□□□□□ -0.93
CDHR3-201ENST00000317716 PTMSP20962 102 aa9.26□□□□□ -0.93
CDHR3-201ENST00000317716 MTHFSP49914 203 aa9.26□□□□□ -0.93
CDHR3-201ENST00000317716 ANKLE2Q86XL3 938 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms