RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 CSB-PGBD3P0DP91 1061 aa10.48□□□□□ -0.73
USF3-201ENST00000316407 GOLGA6L7A0A1B0GV03 622 aa10.48□□□□□ -0.73
USF3-201ENST00000316407 SRRTQ9BXP5 876 aaKnown RBP10.48□□□□□ -0.73
USF3-201ENST00000316407 LRRCC1Q9C099 1032 aa10.48□□□□□ -0.73
USF3-201ENST00000316407 INCENPQ9NQS7 918 aa10.48□□□□□ -0.73
USF3-201ENST00000316407 NEFHP12036 1026 aa10.48□□□□□ -0.73
USF3-201ENST00000316407 CLASRPQ8N2M8 674 aaKnown RBP10.48□□□□□ -0.73
USF3-201ENST00000316407 CCAR1Q8IX12 1150 aaKnown RBP10.47□□□□□ -0.73
USF3-201ENST00000316407 INTS3Q68E01 1043 aaKnown RBP10.47□□□□□ -0.73
USF3-201ENST00000316407 PLCD3Q8N3E9 789 aa10.47□□□□□ -0.73
USF3-201ENST00000316407 SOGA1O94964 1423 aa10.47□□□□□ -0.73
USF3-201ENST00000316407 OFD1O75665 1012 aa10.47□□□□□ -0.73
USF3-201ENST00000316407 DNAJC2Q99543 621 aaKnown RBP10.47□□□□□ -0.73
USF3-201ENST00000316407 MLECQ14165 292 aa10.47□□□□□ -0.73
USF3-201ENST00000316407 L3MBTL2Q969R5 705 aa10.47□□□□□ -0.73
USF3-201ENST00000316407 KIF27Q86VH2 1401 aa10.46□□□□□ -0.73
USF3-201ENST00000316407 PRKRIP1Q9H875 184 aaPredicted RBP10.46□□□□□ -0.73
USF3-201ENST00000316407 DHX16O60231 1041 aaKnown RBP10.46□□□□□ -0.73
USF3-201ENST00000316407 FHAD1B1AJZ9 1412 aa10.46□□□□□ -0.73
USF3-201ENST00000316407 MYO6Q9UM54 1294 aa10.46□□□□□ -0.73
USF3-201ENST00000316407 USP8P40818 1118 aa10.46□□□□□ -0.73
USF3-201ENST00000316407 NGEFQ8N5V2 710 aa10.46□□□□□ -0.73
USF3-201ENST00000316407 MSH5O43196 834 aa10.46□□□□□ -0.74
USF3-201ENST00000316407 RUFY2Q8WXA3 655 aa10.46□□□□□ -0.74
USF3-201ENST00000316407 POLR3GO15318 223 aaPredicted RBP10.46□□□□□ -0.74
USF3-201ENST00000316407 DDX19BQ9UMR2 479 aa10.46□□□□□ -0.74
USF3-201ENST00000316407 DZIP1LQ8IYY4 767 aaKnown RBP10.46□□□□□ -0.74
USF3-201ENST00000316407 LRRFIP2Q9Y608 721 aaKnown RBP10.46□□□□□ -0.74
USF3-201ENST00000316407 MPHOSPH9Q99550 1183 aa10.45□□□□□ -0.74
USF3-201ENST00000316407 PANK3Q9H999 370 aa10.45□□□□□ -0.74
USF3-201ENST00000316407 C9orf78Q9NZ63 289 aaPredicted RBP10.45□□□□□ -0.74
USF3-201ENST00000316407 VPS8Q8N3P4 1428 aa10.45□□□□□ -0.74
USF3-201ENST00000316407 NUP155O75694 1391 aa10.45□□□□□ -0.74
USF3-201ENST00000316407 G3V3G9 751 aa10.45□□□□□ -0.74
USF3-201ENST00000316407 DCAF8Q5TAQ9 597 aa10.45□□□□□ -0.74
USF3-201ENST00000316407 PPP4R3BQ5MIZ7 849 aa10.45□□□□□ -0.74
USF3-201ENST00000316407 IFIT2P09913 472 aaKnown RBP10.45□□□□□ -0.74
USF3-201ENST00000316407 XPCQ01831 940 aaPredicted RBP10.45□□□□□ -0.74
USF3-201ENST00000316407 SAMD1Q6SPF0 538 aaPredicted RBP10.45□□□□□ -0.74
USF3-201ENST00000316407 GOLGA6L10A0A0M3HER8 536 aa10.45□□□□□ -0.74
USF3-201ENST00000316407 LETM1O95202 739 aaPredicted RBP10.45□□□□□ -0.74
USF3-201ENST00000316407 TMCO3Q6UWJ1 677 aa10.45□□□□□ -0.74
USF3-201ENST00000316407 APAF1O14727 1248 aa10.44□□□□□ -0.74
USF3-201ENST00000316407 SERPINC1P01008 464 aa10.44□□□□□ -0.74
USF3-201ENST00000316407 SYCE3A1L190 88 aa10.44□□□□□ -0.74
USF3-201ENST00000316407 CCP110O43303 1012 aa10.44□□□□□ -0.74
USF3-201ENST00000316407 EIF3JO75822 258 aaKnown RBP10.44□□□□□ -0.74
USF3-201ENST00000316407 ERLIN1O75477 346 aa10.44□□□□□ -0.74
USF3-201ENST00000316407 USP47Q96K76 1375 aa10.44□□□□□ -0.74
USF3-201ENST00000316407 GTF2F1P35269 517 aaKnown RBP eCLIP10.43□□□□□ -0.74
USF3-201ENST00000316407 ZRSR2Q15696 482 aaKnown RBP10.43□□□□□ -0.74
USF3-201ENST00000316407 RBM33Q96EV2 1170 aaKnown RBP10.43□□□□□ -0.74
USF3-201ENST00000316407 TNMDQ9H2S6 317 aa10.43□□□□□ -0.74
USF3-201ENST00000316407 SEPT7Q16181 437 aaKnown RBP10.43□□□□□ -0.74
USF3-201ENST00000316407 CCDC47Q96A33 483 aaKnown RBP10.43□□□□□ -0.74
USF3-201ENST00000316407 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.43□□□□□ -0.74
USF3-201ENST00000316407 C11orf95C9JLR9 678 aaPredicted RBP10.43□□□□□ -0.74
USF3-201ENST00000316407 CCDC181Q5TID7 509 aa10.43□□□□□ -0.74
USF3-201ENST00000316407 NUTM2FA1L443 756 aa10.43□□□□□ -0.74
USF3-201ENST00000316407 CCDC192P0DO97 292 aa10.43□□□□□ -0.74
USF3-201ENST00000316407 MTMR7Q9Y216 660 aa10.43□□□□□ -0.74
USF3-201ENST00000316407 ATP2B1P20020 1258 aa10.42□□□□□ -0.74
USF3-201ENST00000316407 NEK4P51957 841 aa10.42□□□□□ -0.74
USF3-201ENST00000316407 PRDM2Q13029 1718 aa10.42□□□□□ -0.74
USF3-201ENST00000316407 EIF2S2P20042 333 aaKnown RBP10.42□□□□□ -0.74
USF3-201ENST00000316407 RNF20Q5VTR2 975 aa10.42□□□□□ -0.74
USF3-201ENST00000316407 TMX1Q9H3N1 280 aa10.42□□□□□ -0.74
USF3-201ENST00000316407 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.42□□□□□ -0.74
USF3-201ENST00000316407 ZBTB9Q96C00 473 aa10.42□□□□□ -0.74
USF3-201ENST00000316407 CNKSR2Q8WXI2 1034 aa10.42□□□□□ -0.74
USF3-201ENST00000316407 CPLX2Q6PUV4 134 aaKnown RBP10.42□□□□□ -0.74
USF3-201ENST00000316407 PDCL3Q9H2J4 239 aa10.41□□□□□ -0.74
USF3-201ENST00000316407 SMARCE1Q969G3 411 aa10.41□□□□□ -0.74
USF3-201ENST00000316407 ZSCAN30Q86W11 494 aa10.41□□□□□ -0.74
USF3-201ENST00000316407 CCDC43Q96MW1 224 aaKnown RBP10.41□□□□□ -0.74
USF3-201ENST00000316407 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.41□□□□□ -0.74
USF3-201ENST00000316407 ST20-MTHFSA0A0A6YYL1 179 aa10.41□□□□□ -0.74
USF3-201ENST00000316407 FMN1Q68DA7 1419 aa10.41□□□□□ -0.74
USF3-201ENST00000316407 MBD3O95983 291 aa10.41□□□□□ -0.74
USF3-201ENST00000316407 CAMK4Q16566 473 aa10.41□□□□□ -0.74
USF3-201ENST00000316407 STK3Q13188 491 aa10.4□□□□□ -0.74
USF3-201ENST00000316407 CDC45O75419 566 aa10.4□□□□□ -0.74
USF3-201ENST00000316407 TRDNQ13061 729 aa10.4□□□□□ -0.74
USF3-201ENST00000316407 SAFBQ15424 915 aaKnown RBP eCLIP10.4□□□□□ -0.74
USF3-201ENST00000316407 TERF2IPQ9NYB0 399 aa10.4□□□□□ -0.74
USF3-201ENST00000316407 FYB1O15117 783 aa10.4□□□□□ -0.74
USF3-201ENST00000316407 C16orf45Q96MC5 204 aaPredicted RBP10.4□□□□□ -0.74
USF3-201ENST00000316407 HDAC5Q9UQL6 1122 aa10.4□□□□□ -0.74
USF3-201ENST00000316407 ERLIN2O94905 339 aa10.4□□□□□ -0.74
USF3-201ENST00000316407 RNF187Q5TA31 235 aaPredicted RBP10.4□□□□□ -0.74
USF3-201ENST00000316407 DDX11Q96FC9 970 aa10.4□□□□□ -0.74
USF3-201ENST00000316407 AMPHP49418 695 aa10.4□□□□□ -0.75
USF3-201ENST00000316407 TMX4Q9H1E5 349 aaPredicted RBP10.4□□□□□ -0.75
USF3-201ENST00000316407 C1orf115Q9H7X2 142 aa10.4□□□□□ -0.75
USF3-201ENST00000316407 NEXNQ0ZGT2 675 aa10.39□□□□□ -0.75
USF3-201ENST00000316407 FILIP1Q7Z7B0 1213 aa10.39□□□□□ -0.75
USF3-201ENST00000316407 CALCOCO1Q9P1Z2 691 aa10.39□□□□□ -0.75
USF3-201ENST00000316407 GTF2A1P52655 376 aaPredicted RBP10.39□□□□□ -0.75
USF3-201ENST00000316407 IRX3P78415 501 aaPredicted RBP10.39□□□□□ -0.75
USF3-201ENST00000316407 MAGEC2Q9UBF1 373 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms