RNA–Protein interactions for RNA: ENST00000316097.12

SCAMP4-201, Transcript of secretory carrier membrane protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCAMP4, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-201ENST00000316097 RCAN3Q9UKA8 241 aa22.65■■□□□ 1.22
SCAMP4-201ENST00000316097 PARD3Q8TEW0 1356 aa22.63■■□□□ 1.21
SCAMP4-201ENST00000316097 ZFYVE9O95405 1425 aa22.63■■□□□ 1.21
SCAMP4-201ENST00000316097 SLC12A5Q9H2X9 1139 aa22.63■■□□□ 1.21
SCAMP4-201ENST00000316097 BRD4O60885 1362 aaPredicted RBP22.62■■□□□ 1.21
SCAMP4-201ENST00000316097 RTN4Q9NQC3 1192 aaKnown RBP22.62■■□□□ 1.21
SCAMP4-201ENST00000316097 CARD14Q9BXL6 1004 aa22.62■■□□□ 1.21
SCAMP4-201ENST00000316097 BACH2Q9BYV9 841 aa22.62■■□□□ 1.21
SCAMP4-201ENST00000316097 RIMS2Q9UQ26 1411 aa22.62■■□□□ 1.21
SCAMP4-201ENST00000316097 TNRQ92752 1358 aa22.61■■□□□ 1.21
SCAMP4-201ENST00000316097 AMER1Q5JTC6 1135 aaPredicted RBP22.6■■□□□ 1.21
SCAMP4-201ENST00000316097 PRAM1Q96QH2 718 aa22.6■■□□□ 1.21
SCAMP4-201ENST00000316097 ASXL1Q8IXJ9 1541 aa22.6■■□□□ 1.21
SCAMP4-201ENST00000316097 CABP2Q9NPB3 220 aa22.6■■□□□ 1.21
SCAMP4-201ENST00000316097 USP35Q9P2H5 1018 aa22.59■■□□□ 1.21
SCAMP4-201ENST00000316097 MINK1Q8N4C8 1332 aaPredicted RBP22.58■■□□□ 1.21
SCAMP4-201ENST00000316097 NLRP13Q86W25 1043 aa22.57■■□□□ 1.2
SCAMP4-201ENST00000316097 MS4A1P11836 297 aa22.57■■□□□ 1.2
SCAMP4-201ENST00000316097 POGKQ9P215 609 aa22.56■■□□□ 1.2
SCAMP4-201ENST00000316097 KDM5AP29375 1690 aaKnown RBP22.56■■□□□ 1.2
SCAMP4-201ENST00000316097 MYOM1P52179 1685 aa22.56■■□□□ 1.2
SCAMP4-201ENST00000316097 SBNO2Q9Y2G9 1366 aa22.56■■□□□ 1.2
SCAMP4-201ENST00000316097 QRICH2Q9H0J4 1663 aa22.56■■□□□ 1.2
SCAMP4-201ENST00000316097 WAPLQ7Z5K2 1190 aa22.55■■□□□ 1.2
SCAMP4-201ENST00000316097 SLC24A1O60721 1099 aa22.55■■□□□ 1.2
SCAMP4-201ENST00000316097 YTHDC2Q9H6S0 1430 aaKnown RBP22.55■■□□□ 1.2
SCAMP4-201ENST00000316097 MYO3AQ8NEV4 1616 aa22.55■■□□□ 1.2
SCAMP4-201ENST00000316097 ALKQ9UM73 1620 aa22.55■■□□□ 1.2
SCAMP4-201ENST00000316097 PPM1GO15355 546 aaPredicted RBP22.54■■□□□ 1.2
SCAMP4-201ENST00000316097 EVC2Q86UK5 1308 aa22.52■■□□□ 1.2
SCAMP4-201ENST00000316097 SRPK2P78362 688 aaKnown RBP22.52■■□□□ 1.2
SCAMP4-201ENST00000316097 ARHGEF28Q8N1W1 1705 aaKnown RBP22.51■■□□□ 1.19
SCAMP4-201ENST00000316097 PTPRMP28827 1452 aa22.51■■□□□ 1.19
SCAMP4-201ENST00000316097 LTKP29376 864 aa22.5■■□□□ 1.19
SCAMP4-201ENST00000316097 PPP2R1AP30153 589 aa22.5■■□□□ 1.19
SCAMP4-201ENST00000316097 PDE3BQ13370 1112 aa22.5■■□□□ 1.19
SCAMP4-201ENST00000316097 CDCA7LQ96GN5 454 aa22.5■■□□□ 1.19
SCAMP4-201ENST00000316097 SKAP1Q86WV1 359 aa22.5■■□□□ 1.19
SCAMP4-201ENST00000316097 METP08581 1390 aa22.5■■□□□ 1.19
SCAMP4-201ENST00000316097 PLIN1O60240 522 aa22.49■■□□□ 1.19
SCAMP4-201ENST00000316097 TULP4Q9NRJ4 1543 aa22.48■■□□□ 1.19
SCAMP4-201ENST00000316097 PLEKHH1Q9ULM0 1364 aa22.48■■□□□ 1.19
SCAMP4-201ENST00000316097 TNNT2P45379 298 aaPredicted RBP22.48■■□□□ 1.19
SCAMP4-201ENST00000316097 TXNDC2Q86VQ3 553 aa22.48■■□□□ 1.19
SCAMP4-201ENST00000316097 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.47■■□□□ 1.19
SCAMP4-201ENST00000316097 TMEM2Q9UHN6 1383 aa22.47■■□□□ 1.19
SCAMP4-201ENST00000316097 DDRGK1Q96HY6 314 aa22.44■■□□□ 1.18
SCAMP4-201ENST00000316097 SLC26A8Q96RN1 970 aa22.44■■□□□ 1.18
SCAMP4-201ENST00000316097 NSD3Q9BZ95 1437 aa22.44■■□□□ 1.18
SCAMP4-201ENST00000316097 CRBNQ96SW2 442 aa22.44■■□□□ 1.18
SCAMP4-201ENST00000316097 CDK19Q9BWU1 502 aa22.44■■□□□ 1.18
SCAMP4-201ENST00000316097 HDGFP51858 240 aaKnown RBP22.43■■□□□ 1.18
SCAMP4-201ENST00000316097 C3P01024 1663 aa22.41■■□□□ 1.18
SCAMP4-201ENST00000316097 ADAMTS8Q9UP79 889 aa22.4■■□□□ 1.18
SCAMP4-201ENST00000316097 UBR1Q8IWV7 1749 aa22.4■■□□□ 1.18
SCAMP4-201ENST00000316097 NRXN3Q9Y4C0 1643 aa22.4■■□□□ 1.18
SCAMP4-201ENST00000316097 FER1L4A9Z1Z3 1794 aa22.38■■□□□ 1.17
SCAMP4-201ENST00000316097 CABP1Q9NZU7 370 aa22.37■■□□□ 1.17
SCAMP4-201ENST00000316097 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.37■■□□□ 1.17
SCAMP4-201ENST00000316097 SLC4A3P48751 1232 aa22.36■■□□□ 1.17
SCAMP4-201ENST00000316097 GSE1Q14687 1217 aa22.36■■□□□ 1.17
SCAMP4-201ENST00000316097 MORC1Q86VD1 984 aa22.36■■□□□ 1.17
SCAMP4-201ENST00000316097 BRPF3Q9ULD4 1205 aa22.36■■□□□ 1.17
SCAMP4-201ENST00000316097 ABCC11Q96J66 1382 aa22.35■■□□□ 1.17
SCAMP4-201ENST00000316097 NCKAP5LQ9HCH0 1330 aa22.35■■□□□ 1.17
SCAMP4-201ENST00000316097 NFKBIBQ15653 356 aa22.35■■□□□ 1.17
SCAMP4-201ENST00000316097 NPC1L1Q9UHC9 1359 aa22.35■■□□□ 1.17
SCAMP4-201ENST00000316097 SETD1AO15047 1707 aaKnown RBP22.35■■□□□ 1.17
SCAMP4-201ENST00000316097 EID1Q9Y6B2 187 aa22.34■■□□□ 1.17
SCAMP4-201ENST00000316097 NLRP1Q9C000 1473 aa22.34■■□□□ 1.17
SCAMP4-201ENST00000316097 A0A1W2PP64 1363 aa22.34■■□□□ 1.17
SCAMP4-201ENST00000316097 PUS7Q96PZ0 661 aaKnown RBP22.33■■□□□ 1.17
SCAMP4-201ENST00000316097 ADAMTS13Q76LX8 1427 aa22.33■■□□□ 1.16
SCAMP4-201ENST00000316097 ANKRD36BQ8N2N9 1353 aa22.32■■□□□ 1.16
SCAMP4-201ENST00000316097 C20orf194Q5TEA3 1177 aa22.32■■□□□ 1.16
SCAMP4-201ENST00000316097 DAXXQ9UER7 740 aaPredicted RBP22.32■■□□□ 1.16
SCAMP4-201ENST00000316097 WDR43Q15061 677 aaKnown RBP eCLIP22.31■■□□□ 1.16
SCAMP4-201ENST00000316097 GGNBP2Q9H3C7 697 aa22.31■■□□□ 1.16
SCAMP4-201ENST00000316097 CGNL1Q0VF96 1302 aa22.31■■□□□ 1.16
SCAMP4-201ENST00000316097 NUTM2FA1L443 756 aa22.31■■□□□ 1.16
SCAMP4-201ENST00000316097 THEMISQ8N1K5 641 aaPredicted RBP22.31■■□□□ 1.16
SCAMP4-201ENST00000316097 BLMP54132 1417 aaPredicted RBP22.3■■□□□ 1.16
SCAMP4-201ENST00000316097 CCDC146Q8IYE0 955 aa22.3■■□□□ 1.16
SCAMP4-201ENST00000316097 ROBO2Q9HCK4 1378 aa22.29■■□□□ 1.16
SCAMP4-201ENST00000316097 WASLO00401 505 aaPredicted RBP22.28■■□□□ 1.16
SCAMP4-201ENST00000316097 ATAD2Q6PL18 1390 aa22.28■■□□□ 1.16
SCAMP4-201ENST00000316097 PLEKHG1Q9ULL1 1385 aa22.28■■□□□ 1.16
SCAMP4-201ENST00000316097 FRAT1Q92837 279 aaPredicted RBP22.27■■□□□ 1.16
SCAMP4-201ENST00000316097 KDM2BQ8NHM5 1336 aa22.27■■□□□ 1.16
SCAMP4-201ENST00000316097 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.26■■□□□ 1.15
SCAMP4-201ENST00000316097 TERF2IPQ9NYB0 399 aa22.26■■□□□ 1.15
SCAMP4-201ENST00000316097 RIMS1Q86UR5 1692 aaKnown RBP22.25■■□□□ 1.15
SCAMP4-201ENST00000316097 CD163L1Q9NR16 1453 aa22.25■■□□□ 1.15
SCAMP4-201ENST00000316097 MTHFSP49914 203 aa22.25■■□□□ 1.15
SCAMP4-201ENST00000316097 DLC1Q96QB1 1528 aa22.25■■□□□ 1.15
SCAMP4-201ENST00000316097 AMOTL2Q9Y2J4 779 aa22.24■■□□□ 1.15
SCAMP4-201ENST00000316097 PTPRUQ92729 1446 aa22.24■■□□□ 1.15
SCAMP4-201ENST00000316097 FYB1O15117 783 aa22.24■■□□□ 1.15
SCAMP4-201ENST00000316097 FBLN1P23142 703 aa22.24■■□□□ 1.15
SCAMP4-201ENST00000316097 CENPQQ7L2Z9 268 aaPredicted RBP22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms