RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 WDR43Q15061 677 aaKnown RBP eCLIP24.53■■□□□ 1.52
CCDC43-201ENST00000315286 SRPK2P78362 688 aaKnown RBP24.52■■□□□ 1.52
CCDC43-201ENST00000315286 PELP1Q8IZL8 1130 aaKnown RBP24.52■■□□□ 1.52
CCDC43-201ENST00000315286 ANKRD36BQ8N2N9 1353 aa24.51■■□□□ 1.51
CCDC43-201ENST00000315286 NRXN3Q9Y4C0 1643 aa24.51■■□□□ 1.51
CCDC43-201ENST00000315286 USP32Q8NFA0 1604 aa24.49■■□□□ 1.51
CCDC43-201ENST00000315286 MORC1Q86VD1 984 aa24.49■■□□□ 1.51
CCDC43-201ENST00000315286 CEBPAP49715 358 aaPredicted RBP24.48■■□□□ 1.51
CCDC43-201ENST00000315286 PDE3BQ13370 1112 aa24.48■■□□□ 1.51
CCDC43-201ENST00000315286 ERICH6BQ5W0A0 696 aa24.48■■□□□ 1.51
CCDC43-201ENST00000315286 UBR1Q8IWV7 1749 aa24.48■■□□□ 1.51
CCDC43-201ENST00000315286 HDGFP51858 240 aaKnown RBP24.47■■□□□ 1.51
CCDC43-201ENST00000315286 CGNL1Q0VF96 1302 aa24.47■■□□□ 1.51
CCDC43-201ENST00000315286 DLC1Q96QB1 1528 aa24.47■■□□□ 1.51
CCDC43-201ENST00000315286 WAPLQ7Z5K2 1190 aa24.46■■□□□ 1.51
CCDC43-201ENST00000315286 ABCC11Q96J66 1382 aa24.45■■□□□ 1.51
CCDC43-201ENST00000315286 NINLQ9Y2I6 1382 aa24.45■■□□□ 1.51
CCDC43-201ENST00000315286 CDK19Q9BWU1 502 aa24.45■■□□□ 1.5
CCDC43-201ENST00000315286 RNF123Q5XPI4 1314 aa24.45■■□□□ 1.5
CCDC43-201ENST00000315286 METP08581 1390 aa24.45■■□□□ 1.5
CCDC43-201ENST00000315286 ATAD2Q6PL18 1390 aa24.45■■□□□ 1.5
CCDC43-201ENST00000315286 TMEM2Q9UHN6 1383 aa24.45■■□□□ 1.5
CCDC43-201ENST00000315286 CDCA7LQ96GN5 454 aa24.44■■□□□ 1.5
CCDC43-201ENST00000315286 PLEKHH1Q9ULM0 1364 aa24.43■■□□□ 1.5
CCDC43-201ENST00000315286 TNNT2P45379 298 aaPredicted RBP24.43■■□□□ 1.5
CCDC43-201ENST00000315286 A0A1W2PP64 1363 aa24.43■■□□□ 1.5
CCDC43-201ENST00000315286 POLR3AO14802 1390 aaPredicted RBP24.41■■□□□ 1.5
CCDC43-201ENST00000315286 C3P01024 1663 aa24.41■■□□□ 1.5
CCDC43-201ENST00000315286 NLRP1Q9C000 1473 aa24.4■■□□□ 1.5
CCDC43-201ENST00000315286 NSD2O96028 1365 aa24.39■■□□□ 1.49
CCDC43-201ENST00000315286 PPP4R2Q9NY27 417 aa24.38■■□□□ 1.49
CCDC43-201ENST00000315286 CD163L1Q9NR16 1453 aa24.38■■□□□ 1.49
CCDC43-201ENST00000315286 FER1L4A9Z1Z3 1794 aa24.38■■□□□ 1.49
CCDC43-201ENST00000315286 TERF2IPQ9NYB0 399 aa24.38■■□□□ 1.49
CCDC43-201ENST00000315286 PLPPR3Q6T4P5 718 aa24.37■■□□□ 1.49
CCDC43-201ENST00000315286 CCDC146Q8IYE0 955 aa24.37■■□□□ 1.49
CCDC43-201ENST00000315286 TXNDC2Q86VQ3 553 aa24.36■■□□□ 1.49
CCDC43-201ENST00000315286 LTKP29376 864 aa24.36■■□□□ 1.49
CCDC43-201ENST00000315286 CABP1Q9NZU7 370 aa24.35■■□□□ 1.49
CCDC43-201ENST00000315286 MTHFSP49914 203 aa24.34■■□□□ 1.49
CCDC43-201ENST00000315286 RCAN3Q9UKA8 241 aa24.34■■□□□ 1.49
CCDC43-201ENST00000315286 KNDC1Q76NI1 1749 aa24.33■■□□□ 1.49
CCDC43-201ENST00000315286 ADAMTS13Q76LX8 1427 aa24.32■■□□□ 1.48
CCDC43-201ENST00000315286 SIRT1Q96EB6 747 aa24.32■■□□□ 1.48
CCDC43-201ENST00000315286 SHPRHQ149N8 1683 aa24.32■■□□□ 1.48
CCDC43-201ENST00000315286 TECPR2O15040 1411 aa24.32■■□□□ 1.48
CCDC43-201ENST00000315286 HDGFL2Q7Z4V5 671 aaPredicted RBP24.31■■□□□ 1.48
CCDC43-201ENST00000315286 ZNF521Q96K83 1311 aa24.31■■□□□ 1.48
CCDC43-201ENST00000315286 GGNBP2Q9H3C7 697 aa24.31■■□□□ 1.48
CCDC43-201ENST00000315286 PLEKHG1Q9ULL1 1385 aa24.31■■□□□ 1.48
CCDC43-201ENST00000315286 FAM135BQ49AJ0 1406 aa24.31■■□□□ 1.48
CCDC43-201ENST00000315286 APAF1O14727 1248 aa24.3■■□□□ 1.48
CCDC43-201ENST00000315286 FYB1O15117 783 aa24.3■■□□□ 1.48
CCDC43-201ENST00000315286 WASLO00401 505 aaPredicted RBP24.3■■□□□ 1.48
CCDC43-201ENST00000315286 CPS1P31327 1500 aa24.28■■□□□ 1.48
CCDC43-201ENST00000315286 RRP1P56182 461 aaKnown RBP24.26■■□□□ 1.47
CCDC43-201ENST00000315286 CFAP53Q96M91 514 aa24.26■■□□□ 1.47
CCDC43-201ENST00000315286 TSHZ2Q9NRE2 1034 aa24.26■■□□□ 1.47
CCDC43-201ENST00000315286 EID1Q9Y6B2 187 aa24.26■■□□□ 1.47
CCDC43-201ENST00000315286 B4GALNT3Q6L9W6 998 aa24.26■■□□□ 1.47
CCDC43-201ENST00000315286 ANKRD26Q9UPS8 1709 aa24.26■■□□□ 1.47
CCDC43-201ENST00000315286 GOLGA2Q08379 1002 aa24.25■■□□□ 1.47
CCDC43-201ENST00000315286 SLIT1O75093 1534 aa24.25■■□□□ 1.47
CCDC43-201ENST00000315286 MED14O60244 1454 aa24.25■■□□□ 1.47
CCDC43-201ENST00000315286 ROBO2Q9HCK4 1378 aa24.24■■□□□ 1.47
CCDC43-201ENST00000315286 ATP7BP35670 1465 aa24.24■■□□□ 1.47
CCDC43-201ENST00000315286 ARHGAP23Q9P227 1491 aa24.24■■□□□ 1.47
CCDC43-201ENST00000315286 SLC26A8Q96RN1 970 aa24.23■■□□□ 1.47
CCDC43-201ENST00000315286 DUSP27Q5VZP5 1158 aa24.23■■□□□ 1.47
CCDC43-201ENST00000315286 THEMISQ8N1K5 641 aaPredicted RBP24.22■■□□□ 1.47
CCDC43-201ENST00000315286 KIF20BQ96Q89 1820 aa24.21■■□□□ 1.47
CCDC43-201ENST00000315286 NUDT16Q96DE0 195 aaKnown RBP24.21■■□□□ 1.47
CCDC43-201ENST00000315286 PPIP5K1Q6PFW1 1433 aa24.21■■□□□ 1.47
CCDC43-201ENST00000315286 SLFN5Q08AF3 891 aa24.2■■□□□ 1.47
CCDC43-201ENST00000315286 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.19■■□□□ 1.46
CCDC43-201ENST00000315286 NGEFQ8N5V2 710 aa24.19■■□□□ 1.46
CCDC43-201ENST00000315286 RUNDC1Q96C34 613 aa24.19■■□□□ 1.46
CCDC43-201ENST00000315286 NCKAP5LQ9HCH0 1330 aa24.18■■□□□ 1.46
CCDC43-201ENST00000315286 CPSF1Q10570 1443 aaKnown RBP24.18■■□□□ 1.46
CCDC43-201ENST00000315286 PTPRUQ92729 1446 aa24.18■■□□□ 1.46
CCDC43-201ENST00000315286 CCDC61Q9Y6R9 512 aa24.18■■□□□ 1.46
CCDC43-201ENST00000315286 TRMT2AQ8IZ69 625 aaKnown RBP24.17■■□□□ 1.46
CCDC43-201ENST00000315286 SPINK5Q9NQ38 1064 aaPredicted RBP24.17■■□□□ 1.46
CCDC43-201ENST00000315286 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.16■■□□□ 1.46
CCDC43-201ENST00000315286 TBX22Q9Y458 520 aa24.15■■□□□ 1.46
CCDC43-201ENST00000315286 U2AF1L5P0DN76 240 aaPredicted RBP24.14■■□□□ 1.46
CCDC43-201ENST00000315286 U2AF1Q01081 240 aaKnown RBP eCLIP24.14■■□□□ 1.46
CCDC43-201ENST00000315286 DMRT2Q9Y5R5 561 aa24.14■■□□□ 1.46
CCDC43-201ENST00000315286 PRR36Q9H6K5 1346 aa24.14■■□□□ 1.46
CCDC43-201ENST00000315286 RIMS1Q86UR5 1692 aaKnown RBP24.14■■□□□ 1.45
CCDC43-201ENST00000315286 TCP11L2Q8N4U5 519 aa24.14■■□□□ 1.45
CCDC43-201ENST00000315286 WWC1Q8IX03 1113 aa24.13■■□□□ 1.45
CCDC43-201ENST00000315286 AMOTL2Q9Y2J4 779 aa24.13■■□□□ 1.45
CCDC43-201ENST00000315286 COL3A1P02461 1466 aaPredicted RBP24.12■■□□□ 1.45
CCDC43-201ENST00000315286 EDC4Q6P2E9 1401 aaKnown RBP24.12■■□□□ 1.45
CCDC43-201ENST00000315286 CDC42BPGQ6DT37 1551 aa24.12■■□□□ 1.45
CCDC43-201ENST00000315286 IQSEC2Q5JU85 1478 aa24.12■■□□□ 1.45
CCDC43-201ENST00000315286 PLIN1O60240 522 aa24.12■■□□□ 1.45
CCDC43-201ENST00000315286 ADGRB2O60241 1585 aa24.11■■□□□ 1.45
CCDC43-201ENST00000315286 NEUROD2Q15784 382 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms