RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 NUTM2FA1L443 756 aa8.91□□□□□ -0.98
CKS1B-201ENST00000308987 CEP164Q9UPV0 1460 aa8.89□□□□□ -0.99
CKS1B-201ENST00000308987 LCE2CQ5TA81 110 aa8.89□□□□□ -0.99
CKS1B-201ENST00000308987 RSPH4AQ5TD94 716 aa8.89□□□□□ -0.99
CKS1B-201ENST00000308987 PXYLP1Q8TE99 480 aa8.89□□□□□ -0.99
CKS1B-201ENST00000308987 ARHGEF1Q92888 912 aaKnown RBP8.89□□□□□ -0.99
CKS1B-201ENST00000308987 FANCD2Q9BXW9 1451 aa8.89□□□□□ -0.99
CKS1B-201ENST00000308987 TTC24A2A3L6 582 aaPredicted RBP8.88□□□□□ -0.99
CKS1B-201ENST00000308987 FAM160A2Q8N612 972 aaPredicted RBP8.88□□□□□ -0.99
CKS1B-201ENST00000308987 THAP11Q96EK4 314 aa8.88□□□□□ -0.99
CKS1B-201ENST00000308987 URB2Q14146 1524 aaKnown RBP8.87□□□□□ -0.99
CKS1B-201ENST00000308987 OATP04181 439 aa8.87□□□□□ -0.99
CKS1B-201ENST00000308987 SNRPBP14678 240 aaKnown RBP8.87□□□□□ -0.99
CKS1B-201ENST00000308987 MORN1Q5T089 497 aa8.87□□□□□ -0.99
CKS1B-201ENST00000308987 CFTRP13569 1480 aa8.87□□□□□ -0.99
CKS1B-201ENST00000308987 PRDM2Q13029 1718 aa8.86□□□□□ -0.99
CKS1B-201ENST00000308987 TERTO14746 1132 aaKnown RBP8.86□□□□□ -0.99
CKS1B-201ENST00000308987 FCHSD2O94868 740 aa8.85□□□□□ -0.99
CKS1B-201ENST00000308987 ATP13A2Q9NQ11 1180 aa8.85□□□□□ -0.99
CKS1B-201ENST00000308987 RSF1Q96T23 1441 aaPredicted RBP8.85□□□□□ -0.99
CKS1B-201ENST00000308987 SMPD1P17405 629 aa8.84□□□□□ -0.99
CKS1B-201ENST00000308987 TOP2AP11388 1531 aaKnown RBP8.84□□□□□ -0.99
CKS1B-201ENST00000308987 FMNL1O95466 1100 aaPredicted RBP8.83□□□□□ -1
CKS1B-201ENST00000308987 FUT2Q10981 343 aa8.83□□□□□ -1
CKS1B-201ENST00000308987 SNIP1Q8TAD8 396 aaKnown RBP8.83□□□□□ -1
CKS1B-201ENST00000308987 SLC27A5Q9Y2P5 690 aa8.83□□□□□ -1
CKS1B-201ENST00000308987 ZBTB24O43167 697 aaPredicted RBP8.82□□□□□ -1
CKS1B-201ENST00000308987 ATP6V1AP38606 617 aa8.82□□□□□ -1
CKS1B-201ENST00000308987 METTL3Q86U44 580 aaKnown RBP8.82□□□□□ -1
CKS1B-201ENST00000308987 PRDM9Q9NQV7 894 aa8.82□□□□□ -1
CKS1B-201ENST00000308987 WNT7AO00755 349 aa8.81□□□□□ -1
CKS1B-201ENST00000308987 RDH13Q8NBN7 331 aa8.81□□□□□ -1
CKS1B-201ENST00000308987 TRIM47Q96LD4 638 aa8.81□□□□□ -1
CKS1B-201ENST00000308987 BRICD5Q6PL45 260 aa8.8□□□□□ -1
CKS1B-201ENST00000308987 KCNV2Q8TDN2 545 aa8.8□□□□□ -1
CKS1B-201ENST00000308987 SENP2Q9HC62 589 aa8.8□□□□□ -1
CKS1B-201ENST00000308987 RIMBP3CA6NJZ7 1639 aa8.8□□□□□ -1
CKS1B-201ENST00000308987 RIMBP3BA6NNM3 1639 aa8.8□□□□□ -1
CKS1B-201ENST00000308987 RIMBP3Q9UFD9 1639 aa8.8□□□□□ -1
CKS1B-201ENST00000308987 J3QL48 77 aa8.79□□□□□ -1
CKS1B-201ENST00000308987 AMER1Q5JTC6 1135 aaPredicted RBP8.79□□□□□ -1
CKS1B-201ENST00000308987 DAXXQ9UER7 740 aaPredicted RBP8.79□□□□□ -1
CKS1B-201ENST00000308987 SALL2Q9Y467 1007 aaPredicted RBP8.79□□□□□ -1
CKS1B-201ENST00000308987 ZNF608Q9ULD9 1512 aaPredicted RBP8.79□□□□□ -1
CKS1B-201ENST00000308987 MRGPRX2Q96LB1 330 aa8.78□□□□□ -1
CKS1B-201ENST00000308987 DDX11L8A8MPP1 907 aa8.77□□□□□ -1.01
CKS1B-201ENST00000308987 FECHP22830 423 aa8.76□□□□□ -1.01
CKS1B-201ENST00000308987 GCGRP47871 477 aa8.76□□□□□ -1.01
CKS1B-201ENST00000308987 HPS1Q92902 700 aa8.76□□□□□ -1.01
CKS1B-201ENST00000308987 TRIM32Q13049 653 aa8.75□□□□□ -1.01
CKS1B-201ENST00000308987 MSS51Q4VC12 460 aa8.75□□□□□ -1.01
CKS1B-201ENST00000308987 KIFC2Q96AC6 838 aa8.75□□□□□ -1.01
CKS1B-201ENST00000308987 CCDC88BA6NC98 1476 aa8.75□□□□□ -1.01
CKS1B-201ENST00000308987 HIC1Q14526 733 aa8.74□□□□□ -1.01
CKS1B-201ENST00000308987 RNF19BQ6ZMZ0 732 aa8.74□□□□□ -1.01
CKS1B-201ENST00000308987 NLRP7Q8WX94 980 aa8.73□□□□□ -1.01
CKS1B-201ENST00000308987 CHD1O14646 1710 aa8.73□□□□□ -1.01
CKS1B-201ENST00000308987 TOPBP1Q92547 1522 aa8.73□□□□□ -1.01
CKS1B-201ENST00000308987 ARHGEF11O15085 1522 aa8.72□□□□□ -1.01
CKS1B-201ENST00000308987 LOC100996750A0A140TA64 210 aa8.72□□□□□ -1.01
CKS1B-201ENST00000308987 FAM181BA6NEQ2 426 aa8.72□□□□□ -1.01
CKS1B-201ENST00000308987 SLC16A10Q8TF71 515 aa8.72□□□□□ -1.01
CKS1B-201ENST00000308987 KRTAP4-6Q9BYQ5 205 aa8.72□□□□□ -1.01
CKS1B-201ENST00000308987 RTN4Q9NQC3 1192 aaKnown RBP8.72□□□□□ -1.01
CKS1B-201ENST00000308987 EIF4G3O43432 1585 aaKnown RBP8.72□□□□□ -1.01
CKS1B-201ENST00000308987 IFT140Q96RY7 1462 aa8.71□□□□□ -1.01
CKS1B-201ENST00000308987 SEMA3EO15041 775 aa8.71□□□□□ -1.02
CKS1B-201ENST00000308987 TARBP1Q13395 1621 aaKnown RBP8.7□□□□□ -1.02
CKS1B-201ENST00000308987 LORP23490 312 aaPredicted RBP8.7□□□□□ -1.02
CKS1B-201ENST00000308987 GMPRP36959 345 aa8.7□□□□□ -1.02
CKS1B-201ENST00000308987 MMP16P51512 607 aa8.7□□□□□ -1.02
CKS1B-201ENST00000308987 SULF1Q8IWU6 871 aa8.69□□□□□ -1.02
CKS1B-201ENST00000308987 REPIN1Q9BWE0 567 aaKnown RBP8.69□□□□□ -1.02
CKS1B-201ENST00000308987 TSHZ2Q9NRE2 1034 aa8.69□□□□□ -1.02
CKS1B-201ENST00000308987 NXF1Q9UBU9 619 aaKnown RBP8.69□□□□□ -1.02
CKS1B-201ENST00000308987 RC3H1Q5TC82 1133 aaKnown RBP8.68□□□□□ -1.02
CKS1B-201ENST00000308987 ZSCAN1Q8NBB4 408 aa8.68□□□□□ -1.02
CKS1B-201ENST00000308987 DNMBPQ6XZF7 1577 aa8.68□□□□□ -1.02
CKS1B-201ENST00000308987 GNPATO15228 680 aa8.67□□□□□ -1.02
CKS1B-201ENST00000308987 GRIPAP1Q4V328 841 aa8.67□□□□□ -1.02
CKS1B-201ENST00000308987 AQRO60306 1485 aaKnown RBP eCLIP8.66□□□□□ -1.022e-6■□□□□ 10.6
CKS1B-201ENST00000308987 SKOR1P84550 965 aa8.66□□□□□ -1.02
CKS1B-201ENST00000308987 Q3C1V9 767 aa8.66□□□□□ -1.02
CKS1B-201ENST00000308987 PHOX2BQ99453 314 aa8.66□□□□□ -1.02
CKS1B-201ENST00000308987 RBM26Q5T8P6 1007 aaKnown RBP8.65□□□□□ -1.02
CKS1B-201ENST00000308987 ARAP1Q96P48 1450 aa8.64□□□□□ -1.03
CKS1B-201ENST00000308987 DXOO77932 396 aaKnown RBP8.64□□□□□ -1.03
CKS1B-201ENST00000308987 CCDC24Q8N4L8 307 aa8.64□□□□□ -1.03
CKS1B-201ENST00000308987 IRF7Q92985 503 aa8.64□□□□□ -1.03
CKS1B-201ENST00000308987 POLA1P09884 1462 aaPredicted RBP8.64□□□□□ -1.03
CKS1B-201ENST00000308987 ALDH1A1P00352 501 aa8.63□□□□□ -1.03
CKS1B-201ENST00000308987 VEGFBP49765 207 aa8.63□□□□□ -1.03
CKS1B-201ENST00000308987 USB1Q9BQ65 265 aaKnown RBP8.63□□□□□ -1.03
CKS1B-201ENST00000308987 ABCC8Q09428 1581 aa8.63□□□□□ -1.03
CKS1B-201ENST00000308987 WNT7BP56706 349 aa8.62□□□□□ -1.03
CKS1B-201ENST00000308987 CYB5RLQ6IPT4 315 aa8.62□□□□□ -1.03
CKS1B-201ENST00000308987 TRIM46Q7Z4K8 759 aa8.62□□□□□ -1.03
CKS1B-201ENST00000308987 NPAS3Q8IXF0 933 aa8.62□□□□□ -1.03
CKS1B-201ENST00000308987 RAD54L2Q9Y4B4 1467 aa8.62□□□□□ -1.03
CKS1B-201ENST00000308987 GPR37O15354 613 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms