RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TTLL5Q6EMB2 1281 aa16.65■□□□□ 0.26
CSPG4-201ENST00000308508 RNF214Q8ND24 703 aa16.65■□□□□ 0.26
CSPG4-201ENST00000308508 PSMA5P28066 241 aa16.64■□□□□ 0.25
CSPG4-201ENST00000308508 PANK3Q9H999 370 aa16.64■□□□□ 0.25
CSPG4-201ENST00000308508 KRI1Q8N9T8 703 aaKnown RBP16.64■□□□□ 0.25
CSPG4-201ENST00000308508 CNKSR2Q8WXI2 1034 aa16.64■□□□□ 0.25
CSPG4-201ENST00000308508 HSP90AB4PQ58FF6 505 aa16.64■□□□□ 0.25
CSPG4-201ENST00000308508 UACAQ9BZF9 1416 aa16.64■□□□□ 0.25
CSPG4-201ENST00000308508 RAD21O60216 631 aa16.64■□□□□ 0.25
CSPG4-201ENST00000308508 CUX2O14529 1486 aa16.64■□□□□ 0.25
CSPG4-201ENST00000308508 PRKRIP1Q9H875 184 aaPredicted RBP16.63■□□□□ 0.25
CSPG4-201ENST00000308508 ELL2O00472 640 aaPredicted RBP16.63■□□□□ 0.25
CSPG4-201ENST00000308508 RALYLQ86SE5 291 aaKnown RBP16.63■□□□□ 0.25
CSPG4-201ENST00000308508 RBM10P98175 930 aaKnown RBP16.63■□□□□ 0.25
CSPG4-201ENST00000308508 G3BP1Q13283 466 aaKnown RBP eCLIP16.63■□□□□ 0.25
CSPG4-201ENST00000308508 ERLIN1O75477 346 aa16.63■□□□□ 0.25
CSPG4-201ENST00000308508 ANKRD18AQ8IVF6 992 aa16.63■□□□□ 0.25
CSPG4-201ENST00000308508 PDCP20941 246 aa16.62■□□□□ 0.25
CSPG4-201ENST00000308508 MCM2P49736 904 aa16.62■□□□□ 0.25
CSPG4-201ENST00000308508 ERCC6Q03468 1493 aa16.62■□□□□ 0.25
CSPG4-201ENST00000308508 CDC45O75419 566 aa16.62■□□□□ 0.25
CSPG4-201ENST00000308508 PIP4K2AP48426 406 aaPredicted RBP16.62■□□□□ 0.25
CSPG4-201ENST00000308508 DYDC1Q8WWB3 177 aa16.62■□□□□ 0.25
CSPG4-201ENST00000308508 LTV1Q96GA3 475 aaPredicted RBP16.61■□□□□ 0.25
CSPG4-201ENST00000308508 VPS37DQ86XT2 251 aa16.61■□□□□ 0.25
CSPG4-201ENST00000308508 SKIDA1Q1XH10 827 aa16.61■□□□□ 0.25
CSPG4-201ENST00000308508 MAGEC2Q9UBF1 373 aaPredicted RBP16.61■□□□□ 0.25
CSPG4-201ENST00000308508 DDX58O95786 925 aaKnown RBP16.61■□□□□ 0.25
CSPG4-201ENST00000308508 TXLNBQ8N3L3 684 aa16.61■□□□□ 0.25
CSPG4-201ENST00000308508 RABEP1Q15276 862 aa16.61■□□□□ 0.25
CSPG4-201ENST00000308508 SEPT7Q16181 437 aaKnown RBP16.61■□□□□ 0.25
CSPG4-201ENST00000308508 NEFHP12036 1026 aa16.6■□□□□ 0.25
CSPG4-201ENST00000308508 FOSBP53539 338 aa16.6■□□□□ 0.25
CSPG4-201ENST00000308508 LUC7LQ9NQ29 371 aaKnown RBP16.6■□□□□ 0.25
CSPG4-201ENST00000308508 TEFQ10587 303 aa16.6■□□□□ 0.25
CSPG4-201ENST00000308508 CARMIL2Q6F5E8 1435 aa16.6■□□□□ 0.25
CSPG4-201ENST00000308508 CCDC112Q8NEF3 446 aa16.6■□□□□ 0.25
CSPG4-201ENST00000308508 ZNHIT6Q9NWK9 470 aaKnown RBP16.59■□□□□ 0.25
CSPG4-201ENST00000308508 COG3Q96JB2 828 aa16.59■□□□□ 0.25
CSPG4-201ENST00000308508 BAZ1AQ9NRL2 1556 aaPredicted RBP16.59■□□□□ 0.25
CSPG4-201ENST00000308508 IQCEQ6IPM2 695 aa16.59■□□□□ 0.25
CSPG4-201ENST00000308508 BRPF3Q9ULD4 1205 aa16.59■□□□□ 0.25
CSPG4-201ENST00000308508 KANK4Q5T7N3 995 aaPredicted RBP16.58■□□□□ 0.25
CSPG4-201ENST00000308508 CCDC144AA2RUR9 1427 aa16.58■□□□□ 0.24
CSPG4-201ENST00000308508 ENOX2Q16206 610 aaKnown RBP16.58■□□□□ 0.24
CSPG4-201ENST00000308508 TTC5Q8N0Z6 440 aa16.58■□□□□ 0.24
CSPG4-201ENST00000308508 UQCRHLA0A096LP55 91 aa16.58■□□□□ 0.24
CSPG4-201ENST00000308508 UQCRHP07919 91 aa16.58■□□□□ 0.24
CSPG4-201ENST00000308508 EID1Q9Y6B2 187 aa16.57■□□□□ 0.24
CSPG4-201ENST00000308508 ST20-MTHFSA0A0A6YYL1 179 aa16.57■□□□□ 0.24
CSPG4-201ENST00000308508 CCDC18Q5T9S5 1454 aa16.57■□□□□ 0.24
CSPG4-201ENST00000308508 CCDC192P0DO97 292 aa16.57■□□□□ 0.24
CSPG4-201ENST00000308508 SOGA1O94964 1423 aa16.57■□□□□ 0.24
CSPG4-201ENST00000308508 LNPKQ9C0E8 428 aa16.57■□□□□ 0.24
CSPG4-201ENST00000308508 ZNF396Q96N95 335 aaPredicted RBP16.56■□□□□ 0.24
CSPG4-201ENST00000308508 EVC2Q86UK5 1308 aa16.56■□□□□ 0.24
CSPG4-201ENST00000308508 TXLNAP40222 546 aa16.56■□□□□ 0.24
CSPG4-201ENST00000308508 USP47Q96K76 1375 aa16.56■□□□□ 0.24
CSPG4-201ENST00000308508 SYCP1Q15431 976 aa16.56■□□□□ 0.24
CSPG4-201ENST00000308508 STK11IPQ8N1F8 1099 aa16.56■□□□□ 0.24
CSPG4-201ENST00000308508 CNTROBQ8N137 903 aa16.56■□□□□ 0.24
CSPG4-201ENST00000308508 SPC24Q8NBT2 197 aa16.55■□□□□ 0.24
CSPG4-201ENST00000308508 EZRP15311 586 aaKnown RBP16.55■□□□□ 0.24
CSPG4-201ENST00000308508 APAF1O14727 1248 aa16.55■□□□□ 0.24
CSPG4-201ENST00000308508 CCDC181Q5TID7 509 aa16.55■□□□□ 0.24
CSPG4-201ENST00000308508 PRPF40AO75400 957 aaKnown RBP16.54■□□□□ 0.24
CSPG4-201ENST00000308508 EIF2S2P20042 333 aaKnown RBP16.53■□□□□ 0.24
CSPG4-201ENST00000308508 PDCL2Q8N4E4 241 aa16.53■□□□□ 0.24
CSPG4-201ENST00000308508 FKBP5Q13451 457 aaPredicted RBP16.53■□□□□ 0.24
CSPG4-201ENST00000308508 CCDC27Q2M243 656 aa16.53■□□□□ 0.24
CSPG4-201ENST00000308508 RSPH4AQ5TD94 716 aa16.53■□□□□ 0.24
CSPG4-201ENST00000308508 PPFIBP1Q86W92 1011 aa16.53■□□□□ 0.24
CSPG4-201ENST00000308508 DACH1Q9UI36 760 aa16.53■□□□□ 0.24
CSPG4-201ENST00000308508 EFCAB2Q5VUJ9 269 aa16.53■□□□□ 0.24
CSPG4-201ENST00000308508 CWC22Q9HCG8 908 aaKnown RBP16.53■□□□□ 0.24
CSPG4-201ENST00000308508 SERPINC1P01008 464 aa16.52■□□□□ 0.24
CSPG4-201ENST00000308508 SART3Q15020 963 aaKnown RBP16.52■□□□□ 0.24
CSPG4-201ENST00000308508 LRRCC1Q9C099 1032 aa16.52■□□□□ 0.24
CSPG4-201ENST00000308508 GIMAP7Q8NHV1 300 aa16.52■□□□□ 0.24
CSPG4-201ENST00000308508 RUNDC1Q96C34 613 aa16.52■□□□□ 0.24
CSPG4-201ENST00000308508 RIPK4P57078 832 aa16.52■□□□□ 0.23
CSPG4-201ENST00000308508 JMYQ8N9B5 988 aa16.52■□□□□ 0.23
CSPG4-201ENST00000308508 BRPF1P55201 1214 aaPredicted RBP16.51■□□□□ 0.23
CSPG4-201ENST00000308508 FMNL2Q96PY5 1086 aa16.51■□□□□ 0.23
CSPG4-201ENST00000308508 GRPEL1Q9HAV7 217 aa16.51■□□□□ 0.23
CSPG4-201ENST00000308508 ANKRD62A6NC57 917 aa16.51■□□□□ 0.23
CSPG4-201ENST00000308508 TRAK1Q9UPV9 953 aa16.51■□□□□ 0.23
CSPG4-201ENST00000308508 HIP1O00291 1037 aa16.51■□□□□ 0.23
CSPG4-201ENST00000308508 CDK5RAP3Q96JB5 506 aa16.51■□□□□ 0.23
CSPG4-201ENST00000308508 CBFA2T2O43439 604 aa16.5■□□□□ 0.23
CSPG4-201ENST00000308508 CCAR1Q8IX12 1150 aaKnown RBP16.5■□□□□ 0.23
CSPG4-201ENST00000308508 NACADO15069 1562 aa16.5■□□□□ 0.23
CSPG4-201ENST00000308508 DIAPH1O60610 1272 aaKnown RBP16.5■□□□□ 0.23
CSPG4-201ENST00000308508 CENPHQ9H3R5 247 aa16.5■□□□□ 0.23
CSPG4-201ENST00000308508 GBP2P32456 591 aaPredicted RBP16.5■□□□□ 0.23
CSPG4-201ENST00000308508 IL27Q8NEV9 243 aa16.5■□□□□ 0.23
CSPG4-201ENST00000308508 CLASRPQ8N2M8 674 aaKnown RBP16.49■□□□□ 0.23
CSPG4-201ENST00000308508 GNAI1P63096 354 aa16.49■□□□□ 0.23
CSPG4-201ENST00000308508 STIM1Q13586 685 aa16.49■□□□□ 0.23
CSPG4-201ENST00000308508 KIF3BO15066 747 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms