RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 ATP7AQ04656 1500 aa11.74□□□□□ -0.53
PTPRE-202ENST00000306042 APAF1O14727 1248 aa11.74□□□□□ -0.53
PTPRE-202ENST00000306042 KRT28Q7Z3Y7 464 aa11.74□□□□□ -0.53
PTPRE-202ENST00000306042 APBB1O00213 710 aa11.74□□□□□ -0.53
PTPRE-202ENST00000306042 NEXNQ0ZGT2 675 aa11.74□□□□□ -0.53
PTPRE-202ENST00000306042 EIF5BO60841 1220 aaKnown RBP11.73□□□□□ -0.53
PTPRE-202ENST00000306042 GAS2L2Q8NHY3 880 aa11.73□□□□□ -0.53
PTPRE-202ENST00000306042 RCAN3Q9UKA8 241 aa11.72□□□□□ -0.53
PTPRE-202ENST00000306042 LMTK3Q96Q04 1460 aa11.72□□□□□ -0.53
PTPRE-202ENST00000306042 RUNDC1Q96C34 613 aa11.72□□□□□ -0.53
PTPRE-202ENST00000306042 ABCA8O94911 1581 aa11.72□□□□□ -0.53
PTPRE-202ENST00000306042 SHANK2Q9UPX8 1470 aa11.72□□□□□ -0.53
PTPRE-202ENST00000306042 KCNJ4P48050 445 aa11.72□□□□□ -0.53
PTPRE-202ENST00000306042 TSPYL4Q9UJ04 414 aa11.72□□□□□ -0.53
PTPRE-202ENST00000306042 SPG7Q9UQ90 795 aa11.72□□□□□ -0.53
PTPRE-202ENST00000306042 CFAP74Q9C0B2 1584 aa11.72□□□□□ -0.53
PTPRE-202ENST00000306042 TSPOAP1O95153 1857 aa11.71□□□□□ -0.53
PTPRE-202ENST00000306042 RBM42Q9BTD8 480 aaKnown RBP11.71□□□□□ -0.53
PTPRE-202ENST00000306042 C19orf44Q9H6X5 657 aa11.71□□□□□ -0.53
PTPRE-202ENST00000306042 RGS3P49796 1198 aa11.7□□□□□ -0.54
PTPRE-202ENST00000306042 TCOF1Q13428 1488 aaKnown RBP11.7□□□□□ -0.54
PTPRE-202ENST00000306042 FRAT2O75474 233 aaPredicted RBP11.7□□□□□ -0.54
PTPRE-202ENST00000306042 DDX58O95786 925 aaKnown RBP11.7□□□□□ -0.54
PTPRE-202ENST00000306042 NECTIN2Q92692 538 aa11.7□□□□□ -0.54
PTPRE-202ENST00000306042 PTPRKQ15262 1439 aa11.7□□□□□ -0.54
PTPRE-202ENST00000306042 CLUAP1Q96AJ1 413 aa11.7□□□□□ -0.54
PTPRE-202ENST00000306042 NPHP3Q7Z494 1330 aa11.7□□□□□ -0.54
PTPRE-202ENST00000306042 RRS1Q15050 365 aaKnown RBP11.7□□□□□ -0.54
PTPRE-202ENST00000306042 ERCC6L2Q5T890 1561 aa11.69□□□□□ -0.54
PTPRE-202ENST00000306042 HMMRO75330 724 aa11.69□□□□□ -0.54
PTPRE-202ENST00000306042 SULT6B1Q6IMI4 303 aa11.69□□□□□ -0.54
PTPRE-202ENST00000306042 ANO8Q9HCE9 1232 aaPredicted RBP11.69□□□□□ -0.54
PTPRE-202ENST00000306042 YEATS2Q9ULM3 1422 aa11.69□□□□□ -0.54
PTPRE-202ENST00000306042 CFAP43Q8NDM7 1665 aa11.69□□□□□ -0.54
PTPRE-202ENST00000306042 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.69□□□□□ -0.54
PTPRE-202ENST00000306042 ZNF530Q6P9A1 599 aaPredicted RBP11.69□□□□□ -0.54
PTPRE-202ENST00000306042 E9PSI1 815 aa11.69□□□□□ -0.54
PTPRE-202ENST00000306042 GNAI1P63096 354 aa11.69□□□□□ -0.54
PTPRE-202ENST00000306042 MAPKBP1O60336 1514 aa11.68□□□□□ -0.54
PTPRE-202ENST00000306042 PRKAR2BP31323 418 aa11.68□□□□□ -0.54
PTPRE-202ENST00000306042 FGD1P98174 961 aa11.68□□□□□ -0.54
PTPRE-202ENST00000306042 TBX22Q9Y458 520 aa11.68□□□□□ -0.54
PTPRE-202ENST00000306042 CABP4P57796 275 aa11.67□□□□□ -0.54
PTPRE-202ENST00000306042 KCNA6P17658 529 aa11.67□□□□□ -0.54
PTPRE-202ENST00000306042 HSP90AB1P08238 724 aaKnown RBP11.66□□□□□ -0.54
PTPRE-202ENST00000306042 PPP2R1AP30153 589 aa11.66□□□□□ -0.54
PTPRE-202ENST00000306042 ZCCHC11Q5TAX3 1644 aaKnown RBP11.66□□□□□ -0.54
PTPRE-202ENST00000306042 C9orf78Q9NZ63 289 aaPredicted RBP11.66□□□□□ -0.54
PTPRE-202ENST00000306042 ISY1Q9ULR0 285 aaKnown RBP11.65□□□□□ -0.54
PTPRE-202ENST00000306042 NME9Q86XW9 330 aa11.65□□□□□ -0.54
PTPRE-202ENST00000306042 BCL2L13Q9BXK5 485 aa11.65□□□□□ -0.54
PTPRE-202ENST00000306042 NSD3Q9BZ95 1437 aa11.65□□□□□ -0.54
PTPRE-202ENST00000306042 MAGI2Q86UL8 1455 aa11.65□□□□□ -0.54
PTPRE-202ENST00000306042 RPRD2Q5VT52 1461 aaKnown RBP11.65□□□□□ -0.55
PTPRE-202ENST00000306042 SCAF11Q99590 1463 aaKnown RBP11.65□□□□□ -0.55
PTPRE-202ENST00000306042 MYO5CQ9NQX4 1742 aa11.65□□□□□ -0.55
PTPRE-202ENST00000306042 FKBP5Q13451 457 aaPredicted RBP11.65□□□□□ -0.55
PTPRE-202ENST00000306042 ACEP12821 1306 aa11.64□□□□□ -0.55
PTPRE-202ENST00000306042 RWDD1Q9H446 243 aaPredicted RBP11.64□□□□□ -0.55
PTPRE-202ENST00000306042 PPP4R2Q9NY27 417 aa11.64□□□□□ -0.55
PTPRE-202ENST00000306042 GPATCH3Q96I76 525 aa11.64□□□□□ -0.55
PTPRE-202ENST00000306042 AIMP1Q12904 312 aaKnown RBP11.64□□□□□ -0.55
PTPRE-202ENST00000306042 PPP1R1BQ9UD71 204 aaPredicted RBP11.63□□□□□ -0.55
PTPRE-202ENST00000306042 TCERG1O14776 1098 aaKnown RBP11.63□□□□□ -0.55
PTPRE-202ENST00000306042 RIC3Q7Z5B4 369 aa11.63□□□□□ -0.55
PTPRE-202ENST00000306042 LRRC59Q96AG4 307 aaKnown RBP11.62□□□□□ -0.55
PTPRE-202ENST00000306042 C8orf37Q96NL8 207 aa11.62□□□□□ -0.55
PTPRE-202ENST00000306042 NAP1L2Q9ULW6 460 aaPredicted RBP11.62□□□□□ -0.55
PTPRE-202ENST00000306042 TCP11L2Q8N4U5 519 aa11.62□□□□□ -0.55
PTPRE-202ENST00000306042 DNMT1P26358 1616 aaKnown RBP11.61□□□□□ -0.55
PTPRE-202ENST00000306042 B4GALNT3Q6L9W6 998 aa11.61□□□□□ -0.55
PTPRE-202ENST00000306042 KDM6BO15054 1643 aa11.61□□□□□ -0.55
PTPRE-202ENST00000306042 EXOC5O00471 708 aa11.61□□□□□ -0.55
PTPRE-202ENST00000306042 ZKSCAN2Q63HK3 967 aa11.61□□□□□ -0.55
PTPRE-202ENST00000306042 TAOK2Q9UL54 1235 aa11.61□□□□□ -0.55
PTPRE-202ENST00000306042 ADAMTS8Q9UP79 889 aa11.61□□□□□ -0.55
PTPRE-202ENST00000306042 CHRNA2Q15822 529 aa11.6□□□□□ -0.55
PTPRE-202ENST00000306042 PNISRQ8TF01 805 aaKnown RBP11.6□□□□□ -0.55
PTPRE-202ENST00000306042 BRD4O60885 1362 aaPredicted RBP11.6□□□□□ -0.55
PTPRE-202ENST00000306042 KIF6Q6ZMV9 814 aa11.6□□□□□ -0.55
PTPRE-202ENST00000306042 API5Q9BZZ5 524 aaKnown RBP11.6□□□□□ -0.55
PTPRE-202ENST00000306042 KIAA1211Q6ZU35 1233 aa11.59□□□□□ -0.55
PTPRE-202ENST00000306042 BECN1Q14457 450 aa11.59□□□□□ -0.55
PTPRE-202ENST00000306042 CFAP44Q96MT7 982 aa11.59□□□□□ -0.55
PTPRE-202ENST00000306042 TMEM2Q9UHN6 1383 aa11.59□□□□□ -0.55
PTPRE-202ENST00000306042 RIMBP3CA6NJZ7 1639 aa11.58□□□□□ -0.56
PTPRE-202ENST00000306042 RIMBP3BA6NNM3 1639 aa11.58□□□□□ -0.56
PTPRE-202ENST00000306042 RIMBP3Q9UFD9 1639 aa11.58□□□□□ -0.56
PTPRE-202ENST00000306042 MLH3Q9UHC1 1453 aa11.58□□□□□ -0.56
PTPRE-202ENST00000306042 FAM177BA6PVY3 158 aa11.58□□□□□ -0.56
PTPRE-202ENST00000306042 HSP90B1P14625 803 aaKnown RBP11.58□□□□□ -0.56
PTPRE-202ENST00000306042 NINLQ9Y2I6 1382 aa11.58□□□□□ -0.56
PTPRE-202ENST00000306042 CLASP1Q7Z460 1538 aa11.58□□□□□ -0.56
PTPRE-202ENST00000306042 ADGRL2O95490 1459 aa11.58□□□□□ -0.56
PTPRE-202ENST00000306042 MAGI3Q5TCQ9 1506 aa11.57□□□□□ -0.56
PTPRE-202ENST00000306042 CCDC30Q5VVM6 783 aa11.57□□□□□ -0.56
PTPRE-202ENST00000306042 MCCP23508 829 aa11.57□□□□□ -0.56
PTPRE-202ENST00000306042 TMOD3Q9NYL9 352 aa11.57□□□□□ -0.56
PTPRE-202ENST00000306042 TTC37Q6PGP7 1564 aa11.57□□□□□ -0.56
PTPRE-202ENST00000306042 TTC21AQ8NDW8 1320 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms