RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 RNF123Q5XPI4 1314 aa8.76□□□□□ -1.01
USP47-201ENST00000305481 NRXN3Q9Y4C0 1643 aa8.76□□□□□ -1.01
USP47-201ENST00000305481 TNRQ92752 1358 aa8.76□□□□□ -1.01
USP47-201ENST00000305481 MINK1Q8N4C8 1332 aaPredicted RBP8.75□□□□□ -1.01
USP47-201ENST00000305481 ANKRD36BQ8N2N9 1353 aa8.75□□□□□ -1.01
USP47-201ENST00000305481 CDCA7LQ96GN5 454 aa8.75□□□□□ -1.01
USP47-201ENST00000305481 USP32Q8NFA0 1604 aa8.75□□□□□ -1.01
USP47-201ENST00000305481 POGKQ9P215 609 aa8.74□□□□□ -1.01
USP47-201ENST00000305481 METP08581 1390 aa8.74□□□□□ -1.01
USP47-201ENST00000305481 CEBPAP49715 358 aaPredicted RBP8.74□□□□□ -1.01
USP47-201ENST00000305481 SRPK2P78362 688 aaKnown RBP8.74□□□□□ -1.01
USP47-201ENST00000305481 WDR43Q15061 677 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP47-201ENST00000305481 ERICH6BQ5W0A0 696 aa8.74□□□□□ -1.01
USP47-201ENST00000305481 WAPLQ7Z5K2 1190 aa8.74□□□□□ -1.01
USP47-201ENST00000305481 PLEKHH1Q9ULM0 1364 aa8.74□□□□□ -1.01
USP47-201ENST00000305481 PDE3BQ13370 1112 aa8.73□□□□□ -1.01
USP47-201ENST00000305481 DLC1Q96QB1 1528 aa8.73□□□□□ -1.01
USP47-201ENST00000305481 UBR1Q8IWV7 1749 aa8.73□□□□□ -1.01
USP47-201ENST00000305481 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.73□□□□□ -1.01
USP47-201ENST00000305481 ABCC11Q96J66 1382 aa8.73□□□□□ -1.01
USP47-201ENST00000305481 CD163L1Q9NR16 1453 aa8.73□□□□□ -1.01
USP47-201ENST00000305481 A0A1W2PP64 1363 aa8.73□□□□□ -1.01
USP47-201ENST00000305481 CGNL1Q0VF96 1302 aa8.73□□□□□ -1.01
USP47-201ENST00000305481 MORC1Q86VD1 984 aa8.73□□□□□ -1.01
USP47-201ENST00000305481 TMEM2Q9UHN6 1383 aa8.72□□□□□ -1.01
USP47-201ENST00000305481 CDK19Q9BWU1 502 aa8.72□□□□□ -1.01
USP47-201ENST00000305481 TRHP20396 242 aaPredicted RBP8.72□□□□□ -1.01
USP47-201ENST00000305481 TNNT2P45379 298 aaPredicted RBP8.72□□□□□ -1.01
USP47-201ENST00000305481 POLR3AO14802 1390 aaPredicted RBP8.72□□□□□ -1.01
USP47-201ENST00000305481 NINLQ9Y2I6 1382 aa8.72□□□□□ -1.01
USP47-201ENST00000305481 ATAD2Q6PL18 1390 aa8.71□□□□□ -1.01
USP47-201ENST00000305481 ZNF521Q96K83 1311 aa8.71□□□□□ -1.02
USP47-201ENST00000305481 PPP4R2Q9NY27 417 aa8.71□□□□□ -1.02
USP47-201ENST00000305481 CCDC146Q8IYE0 955 aa8.71□□□□□ -1.02
USP47-201ENST00000305481 TSHZ2Q9NRE2 1034 aa8.71□□□□□ -1.02
USP47-201ENST00000305481 LTKP29376 864 aa8.7□□□□□ -1.02
USP47-201ENST00000305481 C3P01024 1663 aa8.7□□□□□ -1.02
USP47-201ENST00000305481 SHPRHQ149N8 1683 aa8.7□□□□□ -1.02
USP47-201ENST00000305481 NSD2O96028 1365 aa8.7□□□□□ -1.02
USP47-201ENST00000305481 MTHFSP49914 203 aa8.69□□□□□ -1.02
USP47-201ENST00000305481 TXNDC2Q86VQ3 553 aa8.69□□□□□ -1.02
USP47-201ENST00000305481 CABP1Q9NZU7 370 aa8.69□□□□□ -1.02
USP47-201ENST00000305481 NLRP1Q9C000 1473 aa8.69□□□□□ -1.02
USP47-201ENST00000305481 ADAMTS13Q76LX8 1427 aa8.69□□□□□ -1.02
USP47-201ENST00000305481 HDGFP51858 240 aaKnown RBP8.69□□□□□ -1.02
USP47-201ENST00000305481 RCAN3Q9UKA8 241 aa8.69□□□□□ -1.02
USP47-201ENST00000305481 TECPR2O15040 1411 aa8.69□□□□□ -1.02
USP47-201ENST00000305481 APAF1O14727 1248 aa8.68□□□□□ -1.02
USP47-201ENST00000305481 FYB1O15117 783 aa8.68□□□□□ -1.02
USP47-201ENST00000305481 TERF2IPQ9NYB0 399 aa8.68□□□□□ -1.02
USP47-201ENST00000305481 B4GALNT3Q6L9W6 998 aa8.68□□□□□ -1.02
USP47-201ENST00000305481 SIRT1Q96EB6 747 aa8.68□□□□□ -1.02
USP47-201ENST00000305481 GGNBP2Q9H3C7 697 aa8.68□□□□□ -1.02
USP47-201ENST00000305481 KNDC1Q76NI1 1749 aa8.68□□□□□ -1.02
USP47-201ENST00000305481 FER1L4A9Z1Z3 1794 aa8.67□□□□□ -1.02
USP47-201ENST00000305481 RRP1P56182 461 aaKnown RBP8.67□□□□□ -1.02
USP47-201ENST00000305481 FAM135BQ49AJ0 1406 aa8.67□□□□□ -1.02
USP47-201ENST00000305481 PLEKHG1Q9ULL1 1385 aa8.67□□□□□ -1.02
USP47-201ENST00000305481 DUSP27Q5VZP5 1158 aa8.67□□□□□ -1.02
USP47-201ENST00000305481 CPS1P31327 1500 aa8.67□□□□□ -1.02
USP47-201ENST00000305481 WASLO00401 505 aaPredicted RBP8.67□□□□□ -1.02
USP47-201ENST00000305481 PLPPR3Q6T4P5 718 aa8.67□□□□□ -1.02
USP47-201ENST00000305481 MED14O60244 1454 aa8.67□□□□□ -1.02
USP47-201ENST00000305481 ROBO2Q9HCK4 1378 aa8.66□□□□□ -1.02
USP47-201ENST00000305481 SPINK5Q9NQ38 1064 aaPredicted RBP8.66□□□□□ -1.02
USP47-201ENST00000305481 TRMT2AQ8IZ69 625 aaKnown RBP8.66□□□□□ -1.02
USP47-201ENST00000305481 ARHGAP23Q9P227 1491 aa8.66□□□□□ -1.02
USP47-201ENST00000305481 HDGFL2Q7Z4V5 671 aaPredicted RBP8.66□□□□□ -1.02
USP47-201ENST00000305481 DMRT2Q9Y5R5 561 aa8.66□□□□□ -1.02
USP47-201ENST00000305481 SLIT1O75093 1534 aa8.65□□□□□ -1.02
USP47-201ENST00000305481 GOLGA2Q08379 1002 aa8.65□□□□□ -1.02
USP47-201ENST00000305481 SLFN5Q08AF3 891 aa8.65□□□□□ -1.02
USP47-201ENST00000305481 NCKAP5LQ9HCH0 1330 aa8.65□□□□□ -1.02
USP47-201ENST00000305481 ATP7BP35670 1465 aa8.65□□□□□ -1.02
USP47-201ENST00000305481 ANKRD26Q9UPS8 1709 aa8.65□□□□□ -1.02
USP47-201ENST00000305481 PTPRUQ92729 1446 aa8.65□□□□□ -1.03
USP47-201ENST00000305481 SLC26A8Q96RN1 970 aa8.65□□□□□ -1.03
USP47-201ENST00000305481 CPSF1Q10570 1443 aaKnown RBP8.64□□□□□ -1.03
USP47-201ENST00000305481 PPIP5K1Q6PFW1 1433 aa8.64□□□□□ -1.03
USP47-201ENST00000305481 NUDT16Q96DE0 195 aaKnown RBP8.64□□□□□ -1.03
USP47-201ENST00000305481 COL3A1P02461 1466 aaPredicted RBP8.64□□□□□ -1.03
USP47-201ENST00000305481 IQSEC2Q5JU85 1478 aa8.64□□□□□ -1.03
USP47-201ENST00000305481 CFAP53Q96M91 514 aa8.63□□□□□ -1.03
USP47-201ENST00000305481 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.63□□□□□ -1.03
USP47-201ENST00000305481 PRR36Q9H6K5 1346 aa8.63□□□□□ -1.03
USP47-201ENST00000305481 PLIN1O60240 522 aa8.63□□□□□ -1.03
USP47-201ENST00000305481 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.63□□□□□ -1.03
USP47-201ENST00000305481 KIF20BQ96Q89 1820 aa8.63□□□□□ -1.03
USP47-201ENST00000305481 WWC1Q8IX03 1113 aa8.63□□□□□ -1.03
USP47-201ENST00000305481 EXOC6Q8TAG9 804 aa8.63□□□□□ -1.03
USP47-201ENST00000305481 RUNDC1Q96C34 613 aa8.63□□□□□ -1.03
USP47-201ENST00000305481 EID1Q9Y6B2 187 aa8.63□□□□□ -1.03
USP47-201ENST00000305481 PHF23Q9BUL5 403 aaPredicted RBP8.62□□□□□ -1.03
USP47-201ENST00000305481 FBLN1P23142 703 aa8.62□□□□□ -1.03
USP47-201ENST00000305481 TCP11L2Q8N4U5 519 aa8.62□□□□□ -1.03
USP47-201ENST00000305481 NGEFQ8N5V2 710 aa8.62□□□□□ -1.03
USP47-201ENST00000305481 CCDC61Q9Y6R9 512 aa8.62□□□□□ -1.03
USP47-201ENST00000305481 THEMISQ8N1K5 641 aaPredicted RBP8.62□□□□□ -1.03
USP47-201ENST00000305481 RRP7AQ9Y3A4 280 aaKnown RBP8.62□□□□□ -1.03
USP47-201ENST00000305481 PNPLA6Q8IY17 1366 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms