RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 PRPF40AO75400 957 aaKnown RBP15.55■□□□□ 0.08
COL3A1-201ENST00000304636 FKBP5Q13451 457 aaPredicted RBP15.55■□□□□ 0.08
COL3A1-201ENST00000304636 ERC2O15083 957 aa15.54■□□□□ 0.08
COL3A1-201ENST00000304636 CWC22Q9HCG8 908 aaKnown RBP15.54■□□□□ 0.08
COL3A1-201ENST00000304636 PES1O00541 588 aaKnown RBP15.54■□□□□ 0.08
COL3A1-201ENST00000304636 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.54■□□□□ 0.08
COL3A1-201ENST00000304636 SCAPERQ9BY12 1400 aa15.54■□□□□ 0.08
COL3A1-201ENST00000304636 CCDC73Q6ZRK6 1079 aa15.54■□□□□ 0.08
COL3A1-201ENST00000304636 EID1Q9Y6B2 187 aa15.54■□□□□ 0.08
COL3A1-201ENST00000304636 SYNJ1O43426 1573 aa15.54■□□□□ 0.08
COL3A1-201ENST00000304636 TIAM1Q13009 1591 aa15.54■□□□□ 0.08
COL3A1-201ENST00000304636 HOOK1Q9UJC3 728 aaKnown RBP15.54■□□□□ 0.08
COL3A1-201ENST00000304636 KIAA1107Q9UPP5 1409 aa15.54■□□□□ 0.08
COL3A1-201ENST00000304636 RRP9O43818 475 aaKnown RBP15.53■□□□□ 0.08
COL3A1-201ENST00000304636 MCM4P33991 863 aa15.53■□□□□ 0.08
COL3A1-201ENST00000304636 CIZ1Q9ULV3 898 aaPredicted RBP15.53■□□□□ 0.08
COL3A1-201ENST00000304636 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.53■□□□□ 0.08
COL3A1-201ENST00000304636 MTHFSP49914 203 aa15.53■□□□□ 0.08
COL3A1-201ENST00000304636 CFTRP13569 1480 aa15.53■□□□□ 0.08
COL3A1-201ENST00000304636 PRXQ9BXM0 1461 aa15.53■□□□□ 0.08
COL3A1-201ENST00000304636 NEXNQ0ZGT2 675 aa15.53■□□□□ 0.08
COL3A1-201ENST00000304636 MNS1Q8NEH6 495 aa15.53■□□□□ 0.08
COL3A1-201ENST00000304636 TRIM29Q14134 588 aa15.52■□□□□ 0.08
COL3A1-201ENST00000304636 CT47B1P0C2W7 299 aaPredicted RBP15.52■□□□□ 0.08
COL3A1-201ENST00000304636 TEFQ10587 303 aa15.52■□□□□ 0.08
COL3A1-201ENST00000304636 SYNE3Q6ZMZ3 975 aa15.52■□□□□ 0.08
COL3A1-201ENST00000304636 RAD54L2Q9Y4B4 1467 aa15.52■□□□□ 0.07
COL3A1-201ENST00000304636 K7ELQ4 463 aaPredicted RBP15.52■□□□□ 0.07
COL3A1-201ENST00000304636 EFCAB5A4FU69 1503 aa15.52■□□□□ 0.07
COL3A1-201ENST00000304636 CPLX1O14810 134 aa15.51■□□□□ 0.07
COL3A1-201ENST00000304636 AKAP17AQ02040 695 aaKnown RBP15.51■□□□□ 0.07
COL3A1-201ENST00000304636 ESPNB1AK53 854 aa15.51■□□□□ 0.07
COL3A1-201ENST00000304636 NAT10Q9H0A0 1025 aaKnown RBP15.51■□□□□ 0.07
COL3A1-201ENST00000304636 EHBP1L1Q8N3D4 1523 aa15.51■□□□□ 0.07
COL3A1-201ENST00000304636 EXOSC9Q06265 439 aaKnown RBP15.51■□□□□ 0.07
COL3A1-201ENST00000304636 C1orf141Q5JVX7 400 aa15.51■□□□□ 0.07
COL3A1-201ENST00000304636 NUTM2FA1L443 756 aa15.5■□□□□ 0.07
COL3A1-201ENST00000304636 EIF2S2P20042 333 aaKnown RBP15.5■□□□□ 0.07
COL3A1-201ENST00000304636 NEK4P51957 841 aa15.5■□□□□ 0.07
COL3A1-201ENST00000304636 G3BP1Q13283 466 aaKnown RBP eCLIP15.5■□□□□ 0.07
COL3A1-201ENST00000304636 ANKRD20A12PQ8NF67 263 aa15.5■□□□□ 0.07
COL3A1-201ENST00000304636 IPO7O95373 1038 aaKnown RBP15.5■□□□□ 0.07
COL3A1-201ENST00000304636 WDR63Q8IWG1 891 aa15.5■□□□□ 0.07
COL3A1-201ENST00000304636 RBM10P98175 930 aaKnown RBP15.5■□□□□ 0.07
COL3A1-201ENST00000304636 TSPYL4Q9UJ04 414 aa15.49■□□□□ 0.07
COL3A1-201ENST00000304636 CCDC9Q9Y3X0 531 aaKnown RBP15.49■□□□□ 0.07
COL3A1-201ENST00000304636 ACBD3Q9H3P7 528 aa15.49■□□□□ 0.07
COL3A1-201ENST00000304636 CCDC66A2RUB6 948 aa15.48■□□□□ 0.07
COL3A1-201ENST00000304636 HMOX1P09601 288 aa15.48■□□□□ 0.07
COL3A1-201ENST00000304636 GGNBP2Q9H3C7 697 aa15.48■□□□□ 0.07
COL3A1-201ENST00000304636 PSMA5P28066 241 aa15.48■□□□□ 0.07
COL3A1-201ENST00000304636 MVPQ14764 893 aaKnown RBP15.48■□□□□ 0.07
COL3A1-201ENST00000304636 NOM1Q5C9Z4 860 aaKnown RBP15.48■□□□□ 0.07
COL3A1-201ENST00000304636 NOB1Q9ULX3 412 aaKnown RBP15.48■□□□□ 0.07
COL3A1-201ENST00000304636 DDX58O95786 925 aaKnown RBP15.48■□□□□ 0.07
COL3A1-201ENST00000304636 TRIM5Q9C035 493 aa15.48■□□□□ 0.07
COL3A1-201ENST00000304636 NBPF1Q3BBV0 1214 aa15.47■□□□□ 0.07
COL3A1-201ENST00000304636 CNTROBQ8N137 903 aa15.47■□□□□ 0.07
COL3A1-201ENST00000304636 NECTIN2Q92692 538 aa15.47■□□□□ 0.07
COL3A1-201ENST00000304636 GNAI3P08754 354 aa15.45■□□□□ 0.06
COL3A1-201ENST00000304636 UBTFL1P0CB47 393 aaPredicted RBP15.45■□□□□ 0.06
COL3A1-201ENST00000304636 PDCP20941 246 aa15.45■□□□□ 0.06
COL3A1-201ENST00000304636 CEP89Q96ST8 783 aa15.45■□□□□ 0.06
COL3A1-201ENST00000304636 TRDNQ13061 729 aa15.45■□□□□ 0.06
COL3A1-201ENST00000304636 HSP90B2PQ58FF3 399 aa15.45■□□□□ 0.06
COL3A1-201ENST00000304636 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.44■□□□□ 0.06
COL3A1-201ENST00000304636 ATF7IPQ6VMQ6 1270 aa15.44■□□□□ 0.06
COL3A1-201ENST00000304636 ERBINQ96RT1 1412 aa15.44■□□□□ 0.06
COL3A1-201ENST00000304636 PRDM2Q13029 1718 aa15.44■□□□□ 0.06
COL3A1-201ENST00000304636 SLFN5Q08AF3 891 aa15.44■□□□□ 0.06
COL3A1-201ENST00000304636 UQCRHLA0A096LP55 91 aa15.44■□□□□ 0.06
COL3A1-201ENST00000304636 UQCRHP07919 91 aa15.44■□□□□ 0.06
COL3A1-201ENST00000304636 CCDC27Q2M243 656 aa15.44■□□□□ 0.06
COL3A1-201ENST00000304636 FBXW7Q969H0 707 aa15.44■□□□□ 0.06
COL3A1-201ENST00000304636 MARCH6O60337 910 aa15.43■□□□□ 0.06
COL3A1-201ENST00000304636 CHD1LQ86WJ1 897 aa15.43■□□□□ 0.06
COL3A1-201ENST00000304636 CWC15Q9P013 229 aaKnown RBP15.43■□□□□ 0.06
COL3A1-201ENST00000304636 CABP2Q9NPB3 220 aa15.43■□□□□ 0.06
COL3A1-201ENST00000304636 CCDC47Q96A33 483 aaKnown RBP15.43■□□□□ 0.06
COL3A1-201ENST00000304636 SDF4Q9BRK5 362 aa15.43■□□□□ 0.06
COL3A1-201ENST00000304636 WDR33Q9C0J8 1336 aaKnown RBP15.43■□□□□ 0.06
COL3A1-201ENST00000304636 CCP110O43303 1012 aa15.42■□□□□ 0.06
COL3A1-201ENST00000304636 TWISTNBQ3B726 338 aaPredicted RBP15.42■□□□□ 0.06
COL3A1-201ENST00000304636 ZSCAN30Q86W11 494 aa15.42■□□□□ 0.06
COL3A1-201ENST00000304636 PRKCSHP14314 528 aaPredicted RBP15.42■□□□□ 0.06
COL3A1-201ENST00000304636 TSR2Q969E8 191 aaKnown RBP15.42■□□□□ 0.06
COL3A1-201ENST00000304636 C1orf115Q9H7X2 142 aa15.42■□□□□ 0.06
COL3A1-201ENST00000304636 TOP2BQ02880 1626 aa15.42■□□□□ 0.06
COL3A1-201ENST00000304636 PLEKHH2Q8IVE3 1493 aa15.42■□□□□ 0.06
COL3A1-201ENST00000304636 OLFM4Q6UX06 510 aa15.42■□□□□ 0.06
COL3A1-201ENST00000304636 AK7Q96M32 723 aa15.42■□□□□ 0.06
COL3A1-201ENST00000304636 PCMTD1Q96MG8 357 aaPredicted RBP15.42■□□□□ 0.06
COL3A1-201ENST00000304636 CCDC192P0DO97 292 aa15.41■□□□□ 0.06
COL3A1-201ENST00000304636 NAIPQ13075 1403 aa15.41■□□□□ 0.06
COL3A1-201ENST00000304636 CFAP70Q5T0N1 1121 aa15.41■□□□□ 0.06
COL3A1-201ENST00000304636 FIBPO43427 364 aa15.41■□□□□ 0.06
COL3A1-201ENST00000304636 TTC5Q8N0Z6 440 aa15.41■□□□□ 0.06
COL3A1-201ENST00000304636 PRKAR2BP31323 418 aa15.4■□□□□ 0.06
COL3A1-201ENST00000304636 KINO60870 393 aaKnown RBP15.4■□□□□ 0.06
COL3A1-201ENST00000304636 DHX8Q14562 1220 aaKnown RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms