RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CPLX1O14810 134 aa14.07□□□□□ -0.16
SHROOM3-201ENST00000296043 TMCO3Q6UWJ1 677 aa14.07□□□□□ -0.16
SHROOM3-201ENST00000296043 BRPF1P55201 1214 aaPredicted RBP14.06□□□□□ -0.16
SHROOM3-201ENST00000296043 KINO60870 393 aaKnown RBP14.06□□□□□ -0.16
SHROOM3-201ENST00000296043 MYBBP1AQ9BQG0 1328 aaKnown RBP14.05□□□□□ -0.16
SHROOM3-201ENST00000296043 GOLGA6L10A0A0M3HER8 536 aa14.05□□□□□ -0.16
SHROOM3-201ENST00000296043 ERLIN2O94905 339 aa14.05□□□□□ -0.16
SHROOM3-201ENST00000296043 EPS15P42566 896 aa14.05□□□□□ -0.16
SHROOM3-201ENST00000296043 ZKSCAN1P17029 563 aaPredicted RBP14.05□□□□□ -0.16
SHROOM3-201ENST00000296043 CFDP1Q9UEE9 299 aaPredicted RBP14.05□□□□□ -0.16
SHROOM3-201ENST00000296043 ANKRD62A6NC57 917 aa14.05□□□□□ -0.16
SHROOM3-201ENST00000296043 RNF20Q5VTR2 975 aa14.04□□□□□ -0.16
SHROOM3-201ENST00000296043 LNPKQ9C0E8 428 aa14.04□□□□□ -0.16
SHROOM3-201ENST00000296043 GBP2P32456 591 aaPredicted RBP14.04□□□□□ -0.16
SHROOM3-201ENST00000296043 CEP164Q9UPV0 1460 aa14.04□□□□□ -0.16
SHROOM3-201ENST00000296043 CCDC192P0DO97 292 aa14.04□□□□□ -0.16
SHROOM3-201ENST00000296043 OFD1O75665 1012 aa14.03□□□□□ -0.16
SHROOM3-201ENST00000296043 TDO2P48775 406 aa14.03□□□□□ -0.16
SHROOM3-201ENST00000296043 UBXN4Q92575 508 aa14.03□□□□□ -0.16
SHROOM3-201ENST00000296043 SEPT7Q16181 437 aaKnown RBP14.03□□□□□ -0.16
SHROOM3-201ENST00000296043 INTS3Q68E01 1043 aaKnown RBP14.03□□□□□ -0.16
SHROOM3-201ENST00000296043 LRRFIP2Q9Y608 721 aaKnown RBP14.03□□□□□ -0.16
SHROOM3-201ENST00000296043 MCM4P33991 863 aa14.02□□□□□ -0.16
SHROOM3-201ENST00000296043 NF2P35240 595 aa14.02□□□□□ -0.16
SHROOM3-201ENST00000296043 SMARCE1Q969G3 411 aa14.02□□□□□ -0.16
SHROOM3-201ENST00000296043 TNMDQ9H2S6 317 aa14.02□□□□□ -0.16
SHROOM3-201ENST00000296043 SPAG9O60271 1321 aaKnown RBP14.02□□□□□ -0.16
SHROOM3-201ENST00000296043 PANK1Q8TE04 598 aa14.02□□□□□ -0.16
SHROOM3-201ENST00000296043 SYCE3A1L190 88 aa14.02□□□□□ -0.17
SHROOM3-201ENST00000296043 LMAN1P49257 510 aa14.02□□□□□ -0.17
SHROOM3-201ENST00000296043 DNAAF4Q8WXU2 420 aa14.02□□□□□ -0.17
SHROOM3-201ENST00000296043 CCDC47Q96A33 483 aaKnown RBP14.02□□□□□ -0.17
SHROOM3-201ENST00000296043 KDM4AO75164 1064 aa14.02□□□□□ -0.17
SHROOM3-201ENST00000296043 RUFY2Q8WXA3 655 aa14.02□□□□□ -0.17
SHROOM3-201ENST00000296043 DYNC1I1O14576 645 aa14.02□□□□□ -0.17
SHROOM3-201ENST00000296043 CEBPZQ03701 1054 aaKnown RBP14.02□□□□□ -0.17
SHROOM3-201ENST00000296043 ZFYVE27Q5T4F4 411 aa14.02□□□□□ -0.17
SHROOM3-201ENST00000296043 SYNE3Q6ZMZ3 975 aa14.02□□□□□ -0.17
SHROOM3-201ENST00000296043 SLC26A8Q96RN1 970 aa14.01□□□□□ -0.17
SHROOM3-201ENST00000296043 ARHGAP35Q9NRY4 1499 aa14.01□□□□□ -0.17
SHROOM3-201ENST00000296043 NBPF1Q3BBV0 1214 aa14.01□□□□□ -0.17
SHROOM3-201ENST00000296043 CFAP45Q9UL16 551 aa14.01□□□□□ -0.17
SHROOM3-201ENST00000296043 CDC45O75419 566 aa14□□□□□ -0.17
SHROOM3-201ENST00000296043 FAM107BQ9H098 131 aa14□□□□□ -0.17
SHROOM3-201ENST00000296043 AKNAQ7Z591 1439 aa14□□□□□ -0.17
SHROOM3-201ENST00000296043 CHMP4CQ96CF2 233 aa14□□□□□ -0.17
SHROOM3-201ENST00000296043 SERPINC1P01008 464 aa13.99□□□□□ -0.17
SHROOM3-201ENST00000296043 NFXL1Q6ZNB6 911 aa13.99□□□□□ -0.17
SHROOM3-201ENST00000296043 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.99□□□□□ -0.17
SHROOM3-201ENST00000296043 PPFIBP1Q86W92 1011 aa13.99□□□□□ -0.17
SHROOM3-201ENST00000296043 CCDC181Q5TID7 509 aa13.99□□□□□ -0.17
SHROOM3-201ENST00000296043 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.98□□□□□ -0.17
SHROOM3-201ENST00000296043 MICALCLQ6ZW33 695 aa13.98□□□□□ -0.17
SHROOM3-201ENST00000296043 BCCIPQ9P287 314 aaKnown RBP eCLIP13.98□□□□□ -0.17
SHROOM3-201ENST00000296043 C16orf45Q96MC5 204 aaPredicted RBP13.98□□□□□ -0.17
SHROOM3-201ENST00000296043 CRACR2AQ9BSW2 395 aa13.98□□□□□ -0.17
SHROOM3-201ENST00000296043 BACH2Q9BYV9 841 aa13.98□□□□□ -0.17
SHROOM3-201ENST00000296043 ABCC9O60706 1549 aa13.98□□□□□ -0.17
SHROOM3-201ENST00000296043 EZRP15311 586 aaKnown RBP13.97□□□□□ -0.17
SHROOM3-201ENST00000296043 TXLNBQ8N3L3 684 aa13.97□□□□□ -0.17
SHROOM3-201ENST00000296043 EIF3AQ14152 1382 aaKnown RBP13.97□□□□□ -0.17
SHROOM3-201ENST00000296043 TTC31Q49AM3 519 aaPredicted RBP13.97□□□□□ -0.17
SHROOM3-201ENST00000296043 IQCEQ6IPM2 695 aa13.97□□□□□ -0.17
SHROOM3-201ENST00000296043 CEP63Q96MT8 703 aa13.97□□□□□ -0.17
SHROOM3-201ENST00000296043 STK26Q9P289 416 aa13.97□□□□□ -0.17
SHROOM3-201ENST00000296043 ELL2O00472 640 aaPredicted RBP13.96□□□□□ -0.17
SHROOM3-201ENST00000296043 DDX19BQ9UMR2 479 aa13.96□□□□□ -0.17
SHROOM3-201ENST00000296043 DZIP1LQ8IYY4 767 aaKnown RBP13.96□□□□□ -0.17
SHROOM3-201ENST00000296043 KIF7Q2M1P5 1343 aa13.96□□□□□ -0.17
SHROOM3-201ENST00000296043 IGSF3O75054 1194 aa13.95□□□□□ -0.18
SHROOM3-201ENST00000296043 PTPN14Q15678 1187 aa13.95□□□□□ -0.18
SHROOM3-201ENST00000296043 RABEP1Q15276 862 aa13.95□□□□□ -0.18
SHROOM3-201ENST00000296043 HDGFL2Q7Z4V5 671 aaPredicted RBP13.95□□□□□ -0.18
SHROOM3-201ENST00000296043 PRKRIP1Q9H875 184 aaPredicted RBP13.95□□□□□ -0.18
SHROOM3-201ENST00000296043 FILIP1Q7Z7B0 1213 aa13.95□□□□□ -0.18
SHROOM3-201ENST00000296043 KRT222Q8N1A0 295 aa13.95□□□□□ -0.18
SHROOM3-201ENST00000296043 CPLX2Q6PUV4 134 aaKnown RBP13.95□□□□□ -0.18
SHROOM3-201ENST00000296043 TCEAL9Q9UHQ7 104 aa13.95□□□□□ -0.18
SHROOM3-201ENST00000296043 GTPBP4Q9BZE4 634 aaKnown RBP13.94□□□□□ -0.18
SHROOM3-201ENST00000296043 PKD2Q13563 968 aa13.94□□□□□ -0.18
SHROOM3-201ENST00000296043 TMX1Q9H3N1 280 aa13.94□□□□□ -0.18
SHROOM3-201ENST00000296043 MAGEC2Q9UBF1 373 aaPredicted RBP13.94□□□□□ -0.18
SHROOM3-201ENST00000296043 FILIP1LQ4L180 1135 aa13.94□□□□□ -0.18
SHROOM3-201ENST00000296043 JAKMIP3Q5VZ66 844 aa13.94□□□□□ -0.18
SHROOM3-201ENST00000296043 SARNPP82979 210 aaKnown RBP13.94□□□□□ -0.18
SHROOM3-201ENST00000296043 CCDC94Q9BW85 323 aaPredicted RBP13.94□□□□□ -0.18
SHROOM3-201ENST00000296043 ZNHIT6Q9NWK9 470 aaKnown RBP13.94□□□□□ -0.18
SHROOM3-201ENST00000296043 SAFBQ15424 915 aaKnown RBP eCLIP13.93□□□□□ -0.18
SHROOM3-201ENST00000296043 KIF18AQ8NI77 898 aa13.93□□□□□ -0.18
SHROOM3-201ENST00000296043 MAP2K1Q02750 393 aaPredicted RBP13.93□□□□□ -0.18
SHROOM3-201ENST00000296043 ATP2C2O75185 946 aa13.93□□□□□ -0.18
SHROOM3-201ENST00000296043 RSPH14Q9UHP6 348 aa13.93□□□□□ -0.18
SHROOM3-201ENST00000296043 CPSF2Q9P2I0 782 aaKnown RBP13.93□□□□□ -0.18
SHROOM3-201ENST00000296043 NEK4P51957 841 aa13.93□□□□□ -0.18
SHROOM3-201ENST00000296043 SPATA24Q86W54 205 aa13.92□□□□□ -0.18
SHROOM3-201ENST00000296043 CASQ1P31415 396 aa13.92□□□□□ -0.18
SHROOM3-201ENST00000296043 CCDC91Q7Z6B0 441 aa13.92□□□□□ -0.18
SHROOM3-201ENST00000296043 IFIT2P09913 472 aaKnown RBP13.91□□□□□ -0.18
SHROOM3-201ENST00000296043 CTR9Q6PD62 1173 aa13.91□□□□□ -0.18
SHROOM3-201ENST00000296043 MAP9Q49MG5 647 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms