RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 TMEM131LA2VDJ0 1609 aa15.42■□□□□ 0.06
SYNGAP1-201ENST00000293748 TNNT2P45379 298 aaPredicted RBP15.42■□□□□ 0.06
SYNGAP1-201ENST00000293748 SUPT16HQ9Y5B9 1047 aaKnown RBP15.42■□□□□ 0.06
SYNGAP1-201ENST00000293748 DIP2AQ14689 1571 aa15.41■□□□□ 0.06
SYNGAP1-201ENST00000293748 HIRIP3Q9BW71 556 aaPredicted RBP15.41■□□□□ 0.06
SYNGAP1-201ENST00000293748 TMEM94Q12767 1356 aa15.4■□□□□ 0.06
SYNGAP1-201ENST00000293748 MYOM2P54296 1465 aa15.4■□□□□ 0.06
SYNGAP1-201ENST00000293748 SRPK2P78362 688 aaKnown RBP15.39■□□□□ 0.06
SYNGAP1-201ENST00000293748 MYH16Q9H6N6 1097 aa15.39■□□□□ 0.06
SYNGAP1-201ENST00000293748 IQGAP1P46940 1657 aa15.39■□□□□ 0.05
SYNGAP1-201ENST00000293748 LRPPRCP42704 1394 aaKnown RBP15.39■□□□□ 0.05
SYNGAP1-201ENST00000293748 NOP58Q9Y2X3 529 aaKnown RBP15.39■□□□□ 0.05
SYNGAP1-201ENST00000293748 HAP1P54257 671 aaPredicted RBP15.38■□□□□ 0.05
SYNGAP1-201ENST00000293748 PRAM1Q96QH2 718 aa15.38■□□□□ 0.05
SYNGAP1-201ENST00000293748 CENPJQ9HC77 1338 aaPredicted RBP15.37■□□□□ 0.05
SYNGAP1-201ENST00000293748 NKTRP30414 1462 aaKnown RBP15.37■□□□□ 0.05
SYNGAP1-201ENST00000293748 NCLP19338 710 aaKnown RBP15.37■□□□□ 0.05
SYNGAP1-201ENST00000293748 MINK1Q8N4C8 1332 aaPredicted RBP15.36■□□□□ 0.05
SYNGAP1-201ENST00000293748 FBXO41Q8TF61 875 aa15.36■□□□□ 0.05
SYNGAP1-201ENST00000293748 POLR1AO95602 1720 aaPredicted RBP15.36■□□□□ 0.05
SYNGAP1-201ENST00000293748 NEURL4Q96JN8 1562 aa15.36■□□□□ 0.05
SYNGAP1-201ENST00000293748 SIRT1Q96EB6 747 aa15.36■□□□□ 0.05
SYNGAP1-201ENST00000293748 NEXMIFQ5QGS0 1516 aa15.35■□□□□ 0.05
SYNGAP1-201ENST00000293748 EVC2Q86UK5 1308 aa15.35■□□□□ 0.05
SYNGAP1-201ENST00000293748 YTHDC2Q9H6S0 1430 aaKnown RBP15.35■□□□□ 0.05
SYNGAP1-201ENST00000293748 ABCC11Q96J66 1382 aa15.34■□□□□ 0.05
SYNGAP1-201ENST00000293748 RBM33Q96EV2 1170 aaKnown RBP15.34■□□□□ 0.05
SYNGAP1-201ENST00000293748 NCOA3Q9Y6Q9 1424 aa15.34■□□□□ 0.05
SYNGAP1-201ENST00000293748 NGDNQ8NEJ9 315 aaKnown RBP15.33■□□□□ 0.05
SYNGAP1-201ENST00000293748 METP08581 1390 aa15.33■□□□□ 0.04
SYNGAP1-201ENST00000293748 ADAMTS13Q76LX8 1427 aa15.33■□□□□ 0.04
SYNGAP1-201ENST00000293748 PIK3C2GO75747 1445 aa15.33■□□□□ 0.04
SYNGAP1-201ENST00000293748 TMF1P82094 1093 aa15.32■□□□□ 0.04
SYNGAP1-201ENST00000293748 ESCO1Q5FWF5 840 aa15.32■□□□□ 0.04
SYNGAP1-201ENST00000293748 LMOD2Q6P5Q4 547 aa15.32■□□□□ 0.04
SYNGAP1-201ENST00000293748 NUTM2FA1L443 756 aa15.32■□□□□ 0.04
SYNGAP1-201ENST00000293748 PSME1Q06323 249 aa15.31■□□□□ 0.04
SYNGAP1-201ENST00000293748 WAPLQ7Z5K2 1190 aa15.31■□□□□ 0.04
SYNGAP1-201ENST00000293748 PRAG1Q86YV5 1406 aa15.31■□□□□ 0.04
SYNGAP1-201ENST00000293748 SLAIN2Q9P270 581 aa15.3■□□□□ 0.04
SYNGAP1-201ENST00000293748 SETBP1Q9Y6X0 1596 aa15.3■□□□□ 0.04
SYNGAP1-201ENST00000293748 ALKQ9UM73 1620 aa15.29■□□□□ 0.04
SYNGAP1-201ENST00000293748 IQSEC2Q5JU85 1478 aa15.29■□□□□ 0.04
SYNGAP1-201ENST00000293748 NAP1L5Q96NT1 182 aaPredicted RBP15.29■□□□□ 0.04
SYNGAP1-201ENST00000293748 GPRASP1Q5JY77 1395 aa15.29■□□□□ 0.04
SYNGAP1-201ENST00000293748 NBPF1Q3BBV0 1214 aa15.28■□□□□ 0.04
SYNGAP1-201ENST00000293748 PTMAP06454 111 aaKnown RBP15.28■□□□□ 0.04
SYNGAP1-201ENST00000293748 LAS1LQ9Y4W2 734 aaKnown RBP15.28■□□□□ 0.04
SYNGAP1-201ENST00000293748 HDGFL2Q7Z4V5 671 aaPredicted RBP15.27■□□□□ 0.04
SYNGAP1-201ENST00000293748 LAMC1P11047 1609 aa15.27■□□□□ 0.04
SYNGAP1-201ENST00000293748 PTCH1Q13635 1447 aa15.27■□□□□ 0.03
SYNGAP1-201ENST00000293748 FAM135BQ49AJ0 1406 aa15.27■□□□□ 0.03
SYNGAP1-201ENST00000293748 MEX3CQ5U5Q3 659 aaKnown RBP15.26■□□□□ 0.03
SYNGAP1-201ENST00000293748 RTN4Q9NQC3 1192 aaKnown RBP15.26■□□□□ 0.03
SYNGAP1-201ENST00000293748 ADGRL3Q9HAR2 1447 aa15.25■□□□□ 0.03
SYNGAP1-201ENST00000293748 NPHP3Q7Z494 1330 aa15.25■□□□□ 0.03
SYNGAP1-201ENST00000293748 PAK3O75914 559 aaPredicted RBP15.25■□□□□ 0.03
SYNGAP1-201ENST00000293748 WASLO00401 505 aaPredicted RBP15.24■□□□□ 0.03
SYNGAP1-201ENST00000293748 DEKP35659 375 aaKnown RBP15.24■□□□□ 0.03
SYNGAP1-201ENST00000293748 PHF23Q9BUL5 403 aaPredicted RBP15.24■□□□□ 0.03
SYNGAP1-201ENST00000293748 TERF2IPQ9NYB0 399 aa15.24■□□□□ 0.03
SYNGAP1-201ENST00000293748 PHF8Q9UPP1 1060 aa15.23■□□□□ 0.03
SYNGAP1-201ENST00000293748 CDK19Q9BWU1 502 aa15.23■□□□□ 0.03
SYNGAP1-201ENST00000293748 STRCQ7RTU9 1775 aa15.23■□□□□ 0.03
SYNGAP1-201ENST00000293748 LRRC7Q96NW7 1537 aa15.23■□□□□ 0.03
SYNGAP1-201ENST00000293748 ROBO2Q9HCK4 1378 aa15.23■□□□□ 0.03
SYNGAP1-201ENST00000293748 DNTTIP2Q5QJE6 756 aaKnown RBP15.23■□□□□ 0.03
SYNGAP1-201ENST00000293748 RBM19Q9Y4C8 960 aaKnown RBP15.23■□□□□ 0.03
SYNGAP1-201ENST00000293748 MYO5BQ9ULV0 1848 aa15.23■□□□□ 0.03
SYNGAP1-201ENST00000293748 NBPF8Q3BBV2 869 aa15.22■□□□□ 0.03
SYNGAP1-201ENST00000293748 PPLO60437 1756 aa15.22■□□□□ 0.03
SYNGAP1-201ENST00000293748 DCCP43146 1447 aa15.22■□□□□ 0.03
SYNGAP1-201ENST00000293748 USP47Q96K76 1375 aa15.21■□□□□ 0.03
SYNGAP1-201ENST00000293748 CCER2I3L3R5 266 aa15.21■□□□□ 0.03
SYNGAP1-201ENST00000293748 LRRC59Q96AG4 307 aaKnown RBP15.21■□□□□ 0.02
SYNGAP1-201ENST00000293748 CCDC61Q9Y6R9 512 aa15.21■□□□□ 0.02
SYNGAP1-201ENST00000293748 ATAD2Q6PL18 1390 aa15.2■□□□□ 0.02
SYNGAP1-201ENST00000293748 NUDT16Q96DE0 195 aaKnown RBP15.2■□□□□ 0.02
SYNGAP1-201ENST00000293748 ST20-MTHFSA0A0A6YYL1 179 aa15.19■□□□□ 0.02
SYNGAP1-201ENST00000293748 RALGAPBQ86X10 1494 aa15.19■□□□□ 0.02
SYNGAP1-201ENST00000293748 NRXN1Q9ULB1 1477 aa15.19■□□□□ 0.02
SYNGAP1-201ENST00000293748 B4GALNT3Q6L9W6 998 aa15.19■□□□□ 0.02
SYNGAP1-201ENST00000293748 CFAP53Q96M91 514 aa15.19■□□□□ 0.02
SYNGAP1-201ENST00000293748 PLEKHG5O94827 1062 aa15.19■□□□□ 0.02
SYNGAP1-201ENST00000293748 PTPRUQ92729 1446 aa15.19■□□□□ 0.02
SYNGAP1-201ENST00000293748 L1TD1Q5T7N2 865 aaKnown RBP15.18■□□□□ 0.02
SYNGAP1-201ENST00000293748 CASC1Q6TDU7 716 aa15.17■□□□□ 0.02
SYNGAP1-201ENST00000293748 TECPR2O15040 1411 aa15.17■□□□□ 0.02
SYNGAP1-201ENST00000293748 PMFBP1Q8TBY8 1022 aa15.17■□□□□ 0.02
SYNGAP1-201ENST00000293748 KNSTRNQ9Y448 316 aa15.17■□□□□ 0.02
SYNGAP1-201ENST00000293748 ZNF692Q9BU19 519 aaPredicted RBP15.17■□□□□ 0.02
SYNGAP1-201ENST00000293748 CABP2Q9NPB3 220 aa15.17■□□□□ 0.02
SYNGAP1-201ENST00000293748 DLC1Q96QB1 1528 aa15.16■□□□□ 0.02
SYNGAP1-201ENST00000293748 FOXO3O43524 673 aa15.16■□□□□ 0.02
SYNGAP1-201ENST00000293748 RGS3P49796 1198 aa15.16■□□□□ 0.02
SYNGAP1-201ENST00000293748 FTSJ3Q8IY81 847 aaKnown RBP15.15■□□□□ 0.02
SYNGAP1-201ENST00000293748 KRT28Q7Z3Y7 464 aa15.15■□□□□ 0.02
SYNGAP1-201ENST00000293748 CDK11BP21127 795 aaKnown RBP15.15■□□□□ 0.02
SYNGAP1-201ENST00000293748 ZRSR1Q15695 479 aaKnown RBP15.15■□□□□ 0.02
SYNGAP1-201ENST00000293748 NWD1Q149M9 1564 aa15.14■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms