RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 NEUROD2Q15784 382 aa24.05■■□□□ 1.44
SHKBP1-201ENST00000291842 TRMT2AQ8IZ69 625 aaKnown RBP24.05■■□□□ 1.44
SHKBP1-201ENST00000291842 ARHGEF28Q8N1W1 1705 aaKnown RBP24.04■■□□□ 1.44
SHKBP1-201ENST00000291842 TULP4Q9NRJ4 1543 aa24.04■■□□□ 1.44
SHKBP1-201ENST00000291842 MYO5BQ9ULV0 1848 aa24.04■■□□□ 1.44
SHKBP1-201ENST00000291842 CGNL1Q0VF96 1302 aa24.04■■□□□ 1.44
SHKBP1-201ENST00000291842 TCERG1O14776 1098 aaKnown RBP24.03■■□□□ 1.44
SHKBP1-201ENST00000291842 MTHFSP49914 203 aa24.03■■□□□ 1.44
SHKBP1-201ENST00000291842 RRP7AQ9Y3A4 280 aaKnown RBP24.02■■□□□ 1.44
SHKBP1-201ENST00000291842 BCAR3O75815 825 aa24.01■■□□□ 1.43
SHKBP1-201ENST00000291842 E9PSI1 815 aa24■■□□□ 1.43
SHKBP1-201ENST00000291842 SRPK2P78362 688 aaKnown RBP24■■□□□ 1.43
SHKBP1-201ENST00000291842 ANP32AP39687 249 aaKnown RBP24■■□□□ 1.43
SHKBP1-201ENST00000291842 NKTRP30414 1462 aaKnown RBP23.99■■□□□ 1.43
SHKBP1-201ENST00000291842 PREX1Q8TCU6 1659 aa23.99■■□□□ 1.43
SHKBP1-201ENST00000291842 WWC1Q8IX03 1113 aa23.99■■□□□ 1.43
SHKBP1-201ENST00000291842 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.99■■□□□ 1.43
SHKBP1-201ENST00000291842 PAK3O75914 559 aaPredicted RBP23.98■■□□□ 1.43
SHKBP1-201ENST00000291842 MINK1Q8N4C8 1332 aaPredicted RBP23.98■■□□□ 1.43
SHKBP1-201ENST00000291842 TSPOAP1O95153 1857 aa23.98■■□□□ 1.43
SHKBP1-201ENST00000291842 PDE4AP27815 886 aa23.98■■□□□ 1.43
SHKBP1-201ENST00000291842 ANKRD36BQ8N2N9 1353 aa23.97■■□□□ 1.43
SHKBP1-201ENST00000291842 SHPRHQ149N8 1683 aa23.97■■□□□ 1.43
SHKBP1-201ENST00000291842 NPM2Q86SE8 214 aaKnown RBP23.97■■□□□ 1.43
SHKBP1-201ENST00000291842 PRAM1Q96QH2 718 aa23.96■■□□□ 1.43
SHKBP1-201ENST00000291842 STAG3Q9UJ98 1225 aa23.96■■□□□ 1.43
SHKBP1-201ENST00000291842 NOP58Q9Y2X3 529 aaKnown RBP23.96■■□□□ 1.43
SHKBP1-201ENST00000291842 TMEM131LA2VDJ0 1609 aa23.96■■□□□ 1.43
SHKBP1-201ENST00000291842 ZFYVE9O95405 1425 aa23.95■■□□□ 1.42
SHKBP1-201ENST00000291842 TCP11L2Q8N4U5 519 aa23.95■■□□□ 1.42
SHKBP1-201ENST00000291842 RUNDC1Q96C34 613 aa23.94■■□□□ 1.42
SHKBP1-201ENST00000291842 POGKQ9P215 609 aa23.94■■□□□ 1.42
SHKBP1-201ENST00000291842 MLECQ14165 292 aa23.94■■□□□ 1.42
SHKBP1-201ENST00000291842 PUS7Q96PZ0 661 aaKnown RBP23.94■■□□□ 1.42
SHKBP1-201ENST00000291842 CFAP53Q96M91 514 aa23.93■■□□□ 1.42
SHKBP1-201ENST00000291842 IPO9Q96P70 1041 aaKnown RBP23.93■■□□□ 1.42
SHKBP1-201ENST00000291842 A0A1W2PP64 1363 aa23.92■■□□□ 1.42
SHKBP1-201ENST00000291842 RIMBP3CA6NJZ7 1639 aa23.92■■□□□ 1.42
SHKBP1-201ENST00000291842 RIMBP3BA6NNM3 1639 aa23.92■■□□□ 1.42
SHKBP1-201ENST00000291842 USP32Q8NFA0 1604 aa23.92■■□□□ 1.42
SHKBP1-201ENST00000291842 RIMBP3Q9UFD9 1639 aa23.92■■□□□ 1.42
SHKBP1-201ENST00000291842 BACH2Q9BYV9 841 aa23.92■■□□□ 1.42
SHKBP1-201ENST00000291842 GGNBP2Q9H3C7 697 aa23.92■■□□□ 1.42
SHKBP1-201ENST00000291842 KDM2BQ8NHM5 1336 aa23.91■■□□□ 1.42
SHKBP1-201ENST00000291842 NGEFQ8N5V2 710 aa23.91■■□□□ 1.42
SHKBP1-201ENST00000291842 MS4A1P11836 297 aa23.91■■□□□ 1.42
SHKBP1-201ENST00000291842 DIP2BQ9P265 1576 aa23.9■■□□□ 1.42
SHKBP1-201ENST00000291842 PTPRMP28827 1452 aa23.89■■□□□ 1.42
SHKBP1-201ENST00000291842 YTHDC2Q9H6S0 1430 aaKnown RBP23.89■■□□□ 1.42
SHKBP1-201ENST00000291842 U2AF1L5P0DN76 240 aaPredicted RBP23.89■■□□□ 1.41
SHKBP1-201ENST00000291842 U2AF1Q01081 240 aaKnown RBP eCLIP23.89■■□□□ 1.41
SHKBP1-201ENST00000291842 CENPQQ7L2Z9 268 aaPredicted RBP23.86■■□□□ 1.41
SHKBP1-201ENST00000291842 NSD2O96028 1365 aa23.85■■□□□ 1.41
SHKBP1-201ENST00000291842 ZBTB47Q9UFB7 747 aaPredicted RBP23.84■■□□□ 1.41
SHKBP1-201ENST00000291842 ABCC11Q96J66 1382 aa23.84■■□□□ 1.41
SHKBP1-201ENST00000291842 IQSEC2Q5JU85 1478 aa23.84■■□□□ 1.41
SHKBP1-201ENST00000291842 CANXP27824 592 aaKnown RBP23.84■■□□□ 1.41
SHKBP1-201ENST00000291842 CDK19Q9BWU1 502 aa23.84■■□□□ 1.41
SHKBP1-201ENST00000291842 ALKQ9UM73 1620 aa23.83■■□□□ 1.41
SHKBP1-201ENST00000291842 FRAT1Q92837 279 aaPredicted RBP23.83■■□□□ 1.41
SHKBP1-201ENST00000291842 U2SURPO15042 1029 aaKnown RBP23.82■■□□□ 1.4
SHKBP1-201ENST00000291842 FYB1O15117 783 aa23.82■■□□□ 1.4
SHKBP1-201ENST00000291842 PANK1Q8TE04 598 aa23.82■■□□□ 1.4
SHKBP1-201ENST00000291842 TERF2IPQ9NYB0 399 aa23.82■■□□□ 1.4
SHKBP1-201ENST00000291842 WAPLQ7Z5K2 1190 aa23.81■■□□□ 1.4
SHKBP1-201ENST00000291842 ATAD2Q6PL18 1390 aa23.81■■□□□ 1.4
SHKBP1-201ENST00000291842 PHF23Q9BUL5 403 aaPredicted RBP23.81■■□□□ 1.4
SHKBP1-201ENST00000291842 CABP1Q9NZU7 370 aa23.81■■□□□ 1.4
SHKBP1-201ENST00000291842 CLTCQ00610 1675 aaKnown RBP23.81■■□□□ 1.4
SHKBP1-201ENST00000291842 BCL2L13Q9BXK5 485 aa23.8■■□□□ 1.4
SHKBP1-201ENST00000291842 NINLQ9Y2I6 1382 aa23.79■■□□□ 1.4
SHKBP1-201ENST00000291842 COG6Q9Y2V7 657 aa23.79■■□□□ 1.4
SHKBP1-201ENST00000291842 CD163L1Q9NR16 1453 aa23.79■■□□□ 1.4
SHKBP1-201ENST00000291842 NBR1Q14596 966 aa23.78■■□□□ 1.4
SHKBP1-201ENST00000291842 WDR63Q8IWG1 891 aa23.78■■□□□ 1.4
SHKBP1-201ENST00000291842 RGS3P49796 1198 aa23.77■■□□□ 1.4
SHKBP1-201ENST00000291842 RARSP54136 660 aaKnown RBP23.77■■□□□ 1.4
SHKBP1-201ENST00000291842 HDGFL2Q7Z4V5 671 aaPredicted RBP23.76■■□□□ 1.39
SHKBP1-201ENST00000291842 A2ML1A8K2U0 1454 aa23.75■■□□□ 1.39
SHKBP1-201ENST00000291842 PDE3AQ14432 1141 aa23.75■■□□□ 1.39
SHKBP1-201ENST00000291842 TNNQ9UQP3 1299 aa23.75■■□□□ 1.39
SHKBP1-201ENST00000291842 IGHDP01880 384 aa23.74■■□□□ 1.39
SHKBP1-201ENST00000291842 CCDC27Q2M243 656 aa23.74■■□□□ 1.39
SHKBP1-201ENST00000291842 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.74■■□□□ 1.39
SHKBP1-201ENST00000291842 RIMS2Q9UQ26 1411 aa23.74■■□□□ 1.39
SHKBP1-201ENST00000291842 AGLP35573 1532 aa23.73■■□□□ 1.39
SHKBP1-201ENST00000291842 FBLN1P23142 703 aa23.73■■□□□ 1.39
SHKBP1-201ENST00000291842 PPP6R1Q9UPN7 881 aa23.73■■□□□ 1.39
SHKBP1-201ENST00000291842 ARHGEF40Q8TER5 1519 aa23.73■■□□□ 1.39
SHKBP1-201ENST00000291842 TSR2Q969E8 191 aaKnown RBP23.71■■□□□ 1.39
SHKBP1-201ENST00000291842 NLRP1Q9C000 1473 aa23.71■■□□□ 1.39
SHKBP1-201ENST00000291842 PLEKHF1Q96S99 279 aa23.71■■□□□ 1.39
SHKBP1-201ENST00000291842 REREQ9P2R6 1566 aa23.7■■□□□ 1.38
SHKBP1-201ENST00000291842 RLBP1P12271 317 aa23.7■■□□□ 1.38
SHKBP1-201ENST00000291842 PPM1GO15355 546 aaPredicted RBP23.7■■□□□ 1.38
SHKBP1-201ENST00000291842 CLUAP1Q96AJ1 413 aa23.7■■□□□ 1.38
SHKBP1-201ENST00000291842 MYH16Q9H6N6 1097 aa23.7■■□□□ 1.38
SHKBP1-201ENST00000291842 SPATA31D1Q6ZQQ2 1576 aa23.69■■□□□ 1.38
SHKBP1-201ENST00000291842 COL3A1P02461 1466 aaPredicted RBP23.68■■□□□ 1.38
SHKBP1-201ENST00000291842 TMPOP42166 694 aaKnown RBP23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms