RNA–Protein interactions for RNA: ENST00000275560.3

SSC4D-201, Transcript of scavenger receptor cysteine rich family member with 4 domains, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSC4D, Length 2,801 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSC4D-201ENST00000275560 NAP1L5Q96NT1 182 aaPredicted RBP23.7■■□□□ 1.38
SSC4D-201ENST00000275560 TSR2Q969E8 191 aaKnown RBP23.69■■□□□ 1.38
SSC4D-201ENST00000275560 TRAK2O60296 914 aa23.69■■□□□ 1.38
SSC4D-201ENST00000275560 NGEFQ8N5V2 710 aa23.69■■□□□ 1.38
SSC4D-201ENST00000275560 SHPRHQ149N8 1683 aa23.68■■□□□ 1.38
SSC4D-201ENST00000275560 MTHFSP49914 203 aa23.68■■□□□ 1.38
SSC4D-201ENST00000275560 SPAG9O60271 1321 aaKnown RBP23.67■■□□□ 1.38
SSC4D-201ENST00000275560 MVPQ14764 893 aaKnown RBP23.67■■□□□ 1.38
SSC4D-201ENST00000275560 EFCAB2Q5VUJ9 269 aa23.67■■□□□ 1.38
SSC4D-201ENST00000275560 RTEL1-TNFRSF6BF6WH68 1400 aa23.66■■□□□ 1.38
SSC4D-201ENST00000275560 FTSJ3Q8IY81 847 aaKnown RBP23.66■■□□□ 1.38
SSC4D-201ENST00000275560 TRAK1Q9UPV9 953 aa23.66■■□□□ 1.38
SSC4D-201ENST00000275560 PTPRTO14522 1441 aa23.65■■□□□ 1.38
SSC4D-201ENST00000275560 PHF23Q9BUL5 403 aaPredicted RBP23.64■■□□□ 1.38
SSC4D-201ENST00000275560 CHMP5Q9NZZ3 219 aa23.64■■□□□ 1.38
SSC4D-201ENST00000275560 IQSEC2Q5JU85 1478 aa23.63■■□□□ 1.37
SSC4D-201ENST00000275560 PNNQ9H307 717 aaKnown RBP23.63■■□□□ 1.37
SSC4D-201ENST00000275560 ABCA6Q8N139 1617 aa23.63■■□□□ 1.37
SSC4D-201ENST00000275560 WDR63Q8IWG1 891 aa23.62■■□□□ 1.37
SSC4D-201ENST00000275560 ERCC6L2Q5T890 1561 aa23.62■■□□□ 1.37
SSC4D-201ENST00000275560 KIF3BO15066 747 aa23.62■■□□□ 1.37
SSC4D-201ENST00000275560 PLCH2O75038 1416 aa23.62■■□□□ 1.37
SSC4D-201ENST00000275560 DZIP1LQ8IYY4 767 aaKnown RBP23.61■■□□□ 1.37
SSC4D-201ENST00000275560 CHGAP10645 457 aaKnown RBP23.61■■□□□ 1.37
SSC4D-201ENST00000275560 U2AF1L5P0DN76 240 aaPredicted RBP23.6■■□□□ 1.37
SSC4D-201ENST00000275560 U2AF1Q01081 240 aaKnown RBP eCLIP23.6■■□□□ 1.37
SSC4D-201ENST00000275560 ZKSCAN2Q63HK3 967 aa23.6■■□□□ 1.37
SSC4D-201ENST00000275560 ITPRIPQ8IWB1 547 aa23.6■■□□□ 1.37
SSC4D-201ENST00000275560 SMC4Q9NTJ3 1288 aa23.59■■□□□ 1.37
SSC4D-201ENST00000275560 ABCC1P33527 1531 aa23.58■■□□□ 1.37
SSC4D-201ENST00000275560 TMEM132EQ6IEE7 984 aa23.58■■□□□ 1.37
SSC4D-201ENST00000275560 TRIM27P14373 513 aa23.58■■□□□ 1.36
SSC4D-201ENST00000275560 STAC3Q96MF2 364 aa23.58■■□□□ 1.36
SSC4D-201ENST00000275560 EXOSC9Q06265 439 aaKnown RBP23.57■■□□□ 1.36
SSC4D-201ENST00000275560 ZNF692Q9BU19 519 aaPredicted RBP23.57■■□□□ 1.36
SSC4D-201ENST00000275560 CLCN1P35523 988 aa23.57■■□□□ 1.36
SSC4D-201ENST00000275560 MAP3K4Q9Y6R4 1608 aa23.57■■□□□ 1.36
SSC4D-201ENST00000275560 ERBB4Q15303 1308 aa23.56■■□□□ 1.36
SSC4D-201ENST00000275560 AAMPQ13685 434 aa23.56■■□□□ 1.36
SSC4D-201ENST00000275560 HSCBQ8IWL3 235 aa23.56■■□□□ 1.36
SSC4D-201ENST00000275560 MYH16Q9H6N6 1097 aa23.56■■□□□ 1.36
SSC4D-201ENST00000275560 FOXD4L1Q9NU39 408 aa23.56■■□□□ 1.36
SSC4D-201ENST00000275560 SENP3Q9H4L4 574 aaPredicted RBP23.55■■□□□ 1.36
SSC4D-201ENST00000275560 GRPEL1Q9HAV7 217 aa23.55■■□□□ 1.36
SSC4D-201ENST00000275560 SSH1Q8WYL5 1049 aa23.55■■□□□ 1.36
SSC4D-201ENST00000275560 ZMYM3Q14202 1370 aa23.55■■□□□ 1.36
SSC4D-201ENST00000275560 KIAA1210Q9ULL0 1709 aa23.53■■□□□ 1.36
SSC4D-201ENST00000275560 MRE11P49959 708 aa23.53■■□□□ 1.36
SSC4D-201ENST00000275560 GAS2L3Q86XJ1 694 aa23.52■■□□□ 1.36
SSC4D-201ENST00000275560 ZNF518AQ6AHZ1 1483 aa23.52■■□□□ 1.36
SSC4D-201ENST00000275560 CFAP53Q96M91 514 aa23.51■■□□□ 1.35
SSC4D-201ENST00000275560 LNPKQ9C0E8 428 aa23.51■■□□□ 1.35
SSC4D-201ENST00000275560 NOB1Q9ULX3 412 aaKnown RBP23.51■■□□□ 1.35
SSC4D-201ENST00000275560 ZFYVE16Q7Z3T8 1539 aa23.51■■□□□ 1.35
SSC4D-201ENST00000275560 TET3O43151 1660 aa23.51■■□□□ 1.35
SSC4D-201ENST00000275560 U2SURPO15042 1029 aaKnown RBP23.51■■□□□ 1.35
SSC4D-201ENST00000275560 CCDC27Q2M243 656 aa23.51■■□□□ 1.35
SSC4D-201ENST00000275560 TMEM57Q8N5G2 664 aa23.51■■□□□ 1.35
SSC4D-201ENST00000275560 KANK1Q14678 1352 aa23.5■■□□□ 1.35
SSC4D-201ENST00000275560 TNPO1Q92973 898 aaKnown RBP23.5■■□□□ 1.35
SSC4D-201ENST00000275560 NOS1P29475 1434 aa23.49■■□□□ 1.35
SSC4D-201ENST00000275560 SHROOM2Q13796 1616 aa23.49■■□□□ 1.35
SSC4D-201ENST00000275560 NUTM2DQ5VT03 806 aaPredicted RBP23.49■■□□□ 1.35
SSC4D-201ENST00000275560 MROH2AA6NES4 1674 aa23.48■■□□□ 1.35
SSC4D-201ENST00000275560 SLC24A1O60721 1099 aa23.48■■□□□ 1.35
SSC4D-201ENST00000275560 HDAC1Q13547 482 aaPredicted RBP23.47■■□□□ 1.35
SSC4D-201ENST00000275560 DDX11L8A8MPP1 907 aa23.47■■□□□ 1.35
SSC4D-201ENST00000275560 CD2BP2O95400 341 aaKnown RBP23.47■■□□□ 1.35
SSC4D-201ENST00000275560 ATF7IPQ6VMQ6 1270 aa23.47■■□□□ 1.35
SSC4D-201ENST00000275560 ESPNB1AK53 854 aa23.46■■□□□ 1.35
SSC4D-201ENST00000275560 SAFB2Q14151 953 aaKnown RBP eCLIP23.46■■□□□ 1.35
SSC4D-201ENST00000275560 MYOM2P54296 1465 aa23.46■■□□□ 1.35
SSC4D-201ENST00000275560 DDIT3P35638 169 aa23.46■■□□□ 1.35
SSC4D-201ENST00000275560 DDX19BQ9UMR2 479 aa23.46■■□□□ 1.35
SSC4D-201ENST00000275560 HSP90AA1P07900 732 aaKnown RBP23.45■■□□□ 1.34
SSC4D-201ENST00000275560 HSP90AB1P08238 724 aaKnown RBP23.45■■□□□ 1.34
SSC4D-201ENST00000275560 SMC5Q8IY18 1101 aa23.45■■□□□ 1.34
SSC4D-201ENST00000275560 DEPDC5O75140 1603 aa23.45■■□□□ 1.34
SSC4D-201ENST00000275560 CFAP65Q6ZU64 1925 aaKnown RBP23.45■■□□□ 1.34
SSC4D-201ENST00000275560 TRIM35Q9UPQ4 493 aa23.44■■□□□ 1.34
SSC4D-201ENST00000275560 CHD1O14646 1710 aa23.44■■□□□ 1.34
SSC4D-201ENST00000275560 RBM42Q9BTD8 480 aaKnown RBP23.44■■□□□ 1.34
SSC4D-201ENST00000275560 CD109Q6YHK3 1445 aa23.43■■□□□ 1.34
SSC4D-201ENST00000275560 HSP90AA2PQ14568 343 aaPredicted RBP23.43■■□□□ 1.34
SSC4D-201ENST00000275560 ZCCHC11Q5TAX3 1644 aaKnown RBP23.42■■□□□ 1.34
SSC4D-201ENST00000275560 KIF1BO60333 1816 aa23.42■■□□□ 1.34
SSC4D-201ENST00000275560 SBNO2Q9Y2G9 1366 aa23.42■■□□□ 1.34
SSC4D-201ENST00000275560 TMPOP42166 694 aaKnown RBP23.42■■□□□ 1.34
SSC4D-201ENST00000275560 CABP2Q9NPB3 220 aa23.42■■□□□ 1.34
SSC4D-201ENST00000275560 ZBTB40Q9NUA8 1239 aa23.42■■□□□ 1.34
SSC4D-201ENST00000275560 NCOA3Q9Y6Q9 1424 aa23.41■■□□□ 1.34
SSC4D-201ENST00000275560 VSIG10Q8N0Z9 540 aa23.41■■□□□ 1.34
SSC4D-201ENST00000275560 QRICH2Q9H0J4 1663 aa23.41■■□□□ 1.34
SSC4D-201ENST00000275560 C1orf115Q9H7X2 142 aa23.41■■□□□ 1.34
SSC4D-201ENST00000275560 MYO3AQ8NEV4 1616 aa23.4■■□□□ 1.34
SSC4D-201ENST00000275560 RBM25P49756 843 aaKnown RBP23.4■■□□□ 1.34
SSC4D-201ENST00000275560 GGNBP2Q9H3C7 697 aa23.4■■□□□ 1.34
SSC4D-201ENST00000275560 TRIM44Q96DX7 344 aaPredicted RBP23.39■■□□□ 1.34
SSC4D-201ENST00000275560 KIF2CQ99661 725 aa23.39■■□□□ 1.34
SSC4D-201ENST00000275560 NUCB1Q02818 461 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms