RNA–Protein interactions for RNA: ENST00000273342.8

COL8A1-202, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 2 BASIC

Gene COL8A1, Length 3,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-202ENST00000273342 EXOSC9Q06265 439 aaKnown RBP16.3■□□□□ 0.2
COL8A1-202ENST00000273342 GRPEL1Q9HAV7 217 aa16.3■□□□□ 0.2
COL8A1-202ENST00000273342 LAMC1P11047 1609 aa16.3■□□□□ 0.2
COL8A1-202ENST00000273342 NSD3Q9BZ95 1437 aa16.3■□□□□ 0.2
COL8A1-202ENST00000273342 SYNMO15061 1565 aa16.29■□□□□ 0.2
COL8A1-202ENST00000273342 CLASP1Q7Z460 1538 aa16.29■□□□□ 0.2
COL8A1-202ENST00000273342 ERBB4Q15303 1308 aa16.28■□□□□ 0.2
COL8A1-202ENST00000273342 TTC37Q6PGP7 1564 aa16.28■□□□□ 0.2
COL8A1-202ENST00000273342 HSP90AA2PQ14568 343 aaPredicted RBP16.28■□□□□ 0.2
COL8A1-202ENST00000273342 TRIM27P14373 513 aa16.28■□□□□ 0.2
COL8A1-202ENST00000273342 UNC13BO14795 1591 aa16.28■□□□□ 0.2
COL8A1-202ENST00000273342 TRAPPC8Q9Y2L5 1435 aa16.27■□□□□ 0.2
COL8A1-202ENST00000273342 HSP90AB1P08238 724 aaKnown RBP16.27■□□□□ 0.2
COL8A1-202ENST00000273342 CLCN1P35523 988 aa16.27■□□□□ 0.2
COL8A1-202ENST00000273342 MRE11P49959 708 aa16.27■□□□□ 0.2
COL8A1-202ENST00000273342 GAS2L3Q86XJ1 694 aa16.27■□□□□ 0.2
COL8A1-202ENST00000273342 NPC1L1Q9UHC9 1359 aa16.27■□□□□ 0.19
COL8A1-202ENST00000273342 NINLQ9Y2I6 1382 aa16.27■□□□□ 0.19
COL8A1-202ENST00000273342 GGT6Q6P531 493 aa16.27■□□□□ 0.19
COL8A1-202ENST00000273342 TRIM44Q96DX7 344 aaPredicted RBP16.27■□□□□ 0.19
COL8A1-202ENST00000273342 SSH1Q8WYL5 1049 aa16.26■□□□□ 0.19
COL8A1-202ENST00000273342 MADDQ8WXG6 1647 aa16.26■□□□□ 0.19
COL8A1-202ENST00000273342 ERVK-7P63135 1459 aa16.26■□□□□ 0.19
COL8A1-202ENST00000273342 IQGAP3Q86VI3 1631 aa16.26■□□□□ 0.19
COL8A1-202ENST00000273342 NOB1Q9ULX3 412 aaKnown RBP16.26■□□□□ 0.19
COL8A1-202ENST00000273342 PREX2Q70Z35 1606 aa16.25■□□□□ 0.19
COL8A1-202ENST00000273342 TNPO1Q92973 898 aaKnown RBP16.25■□□□□ 0.19
COL8A1-202ENST00000273342 ESPNB1AK53 854 aa16.25■□□□□ 0.19
COL8A1-202ENST00000273342 WDR63Q8IWG1 891 aa16.25■□□□□ 0.19
COL8A1-202ENST00000273342 CFAP53Q96M91 514 aa16.25■□□□□ 0.19
COL8A1-202ENST00000273342 POLR3AO14802 1390 aaPredicted RBP16.25■□□□□ 0.19
COL8A1-202ENST00000273342 NGEFQ8N5V2 710 aa16.24■□□□□ 0.19
COL8A1-202ENST00000273342 RBM42Q9BTD8 480 aaKnown RBP16.24■□□□□ 0.19
COL8A1-202ENST00000273342 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.24■□□□□ 0.19
COL8A1-202ENST00000273342 MAST1Q9Y2H9 1570 aa16.24■□□□□ 0.19
COL8A1-202ENST00000273342 TMEM57Q8N5G2 664 aa16.24■□□□□ 0.19
COL8A1-202ENST00000273342 RNF17Q9BXT8 1623 aaKnown RBP16.24■□□□□ 0.19
COL8A1-202ENST00000273342 C1orf115Q9H7X2 142 aa16.24■□□□□ 0.19
COL8A1-202ENST00000273342 ATP10AO60312 1499 aa16.23■□□□□ 0.19
COL8A1-202ENST00000273342 DUOX2Q9NRD8 1548 aa16.23■□□□□ 0.19
COL8A1-202ENST00000273342 UGGT1Q9NYU2 1555 aa16.23■□□□□ 0.19
COL8A1-202ENST00000273342 MYOM1P52179 1685 aa16.22■□□□□ 0.19
COL8A1-202ENST00000273342 ERCC6L2Q5T890 1561 aa16.22■□□□□ 0.19
COL8A1-202ENST00000273342 CD2BP2O95400 341 aaKnown RBP16.22■□□□□ 0.19
COL8A1-202ENST00000273342 IQGAP1P46940 1657 aa16.22■□□□□ 0.19
COL8A1-202ENST00000273342 VIRMAQ69YN4 1812 aaKnown RBP16.22■□□□□ 0.19
COL8A1-202ENST00000273342 DDX11L8A8MPP1 907 aa16.21■□□□□ 0.19
COL8A1-202ENST00000273342 ZNF692Q9BU19 519 aaPredicted RBP16.21■□□□□ 0.19
COL8A1-202ENST00000273342 GLIPR1L2Q4G1C9 344 aa16.21■□□□□ 0.18
COL8A1-202ENST00000273342 PKNOX2Q96KN3 472 aa16.21■□□□□ 0.18
COL8A1-202ENST00000273342 ATF7IPQ6VMQ6 1270 aa16.2■□□□□ 0.18
COL8A1-202ENST00000273342 ZMYND15Q9H091 742 aa16.2■□□□□ 0.18
COL8A1-202ENST00000273342 GGNBP2Q9H3C7 697 aa16.2■□□□□ 0.18
COL8A1-202ENST00000273342 CABP2Q9NPB3 220 aa16.2■□□□□ 0.18
COL8A1-202ENST00000273342 ELL2O00472 640 aaPredicted RBP16.19■□□□□ 0.18
COL8A1-202ENST00000273342 ANKRD45Q5TZF3 282 aa16.19■□□□□ 0.18
COL8A1-202ENST00000273342 RTEL1-TNFRSF6BF6WH68 1400 aa16.19■□□□□ 0.18
COL8A1-202ENST00000273342 SCAPERQ9BY12 1400 aa16.19■□□□□ 0.18
COL8A1-202ENST00000273342 PHF23Q9BUL5 403 aaPredicted RBP16.19■□□□□ 0.18
COL8A1-202ENST00000273342 DDX19BQ9UMR2 479 aa16.19■□□□□ 0.18
COL8A1-202ENST00000273342 KDM5AP29375 1690 aaKnown RBP16.19■□□□□ 0.18
COL8A1-202ENST00000273342 NCLP19338 710 aaKnown RBP16.19■□□□□ 0.18
COL8A1-202ENST00000273342 SSFA2P28290 1259 aa16.17■□□□□ 0.18
COL8A1-202ENST00000273342 AAMPQ13685 434 aa16.17■□□□□ 0.18
COL8A1-202ENST00000273342 CLTCL1P53675 1640 aa16.17■□□□□ 0.18
COL8A1-202ENST00000273342 STK26Q9P289 416 aa16.16■□□□□ 0.18
COL8A1-202ENST00000273342 FBLN1P23142 703 aa16.16■□□□□ 0.18
COL8A1-202ENST00000273342 RIPK4P57078 832 aa16.16■□□□□ 0.18
COL8A1-202ENST00000273342 PTPRTO14522 1441 aa16.15■□□□□ 0.18
COL8A1-202ENST00000273342 TMPOP42166 694 aaKnown RBP16.15■□□□□ 0.18
COL8A1-202ENST00000273342 GBP4Q96PP9 640 aa16.15■□□□□ 0.18
COL8A1-202ENST00000273342 ARID3AQ99856 593 aa16.15■□□□□ 0.18
COL8A1-202ENST00000273342 KANK1Q14678 1352 aa16.15■□□□□ 0.18
COL8A1-202ENST00000273342 HDAC1Q13547 482 aaPredicted RBP16.15■□□□□ 0.18
COL8A1-202ENST00000273342 SMC5Q8IY18 1101 aa16.14■□□□□ 0.17
COL8A1-202ENST00000273342 CHD1LQ86WJ1 897 aa16.14■□□□□ 0.17
COL8A1-202ENST00000273342 TRIM35Q9UPQ4 493 aa16.14■□□□□ 0.17
COL8A1-202ENST00000273342 ZBTB40Q9NUA8 1239 aa16.13■□□□□ 0.17
COL8A1-202ENST00000273342 CEP152O94986 1710 aa16.13■□□□□ 0.17
COL8A1-202ENST00000273342 THUMPD2Q9BTF0 503 aaKnown RBP16.13■□□□□ 0.17
COL8A1-202ENST00000273342 ZBTB7CA1YPR0 619 aa16.13■□□□□ 0.17
COL8A1-202ENST00000273342 GAS2L2Q8NHY3 880 aa16.13■□□□□ 0.17
COL8A1-202ENST00000273342 STAC3Q96MF2 364 aa16.13■□□□□ 0.17
COL8A1-202ENST00000273342 DDX49Q9Y6V7 483 aaKnown RBP16.13■□□□□ 0.17
COL8A1-202ENST00000273342 NOS1P29475 1434 aa16.13■□□□□ 0.17
COL8A1-202ENST00000273342 PLXNC1O60486 1568 aa16.13■□□□□ 0.17
COL8A1-202ENST00000273342 CCDC27Q2M243 656 aa16.12■□□□□ 0.17
COL8A1-202ENST00000273342 RBM10P98175 930 aaKnown RBP16.12■□□□□ 0.17
COL8A1-202ENST00000273342 TRPM2O94759 1503 aa16.11■□□□□ 0.17
COL8A1-202ENST00000273342 PLCH2O75038 1416 aa16.11■□□□□ 0.17
COL8A1-202ENST00000273342 SLC24A1O60721 1099 aa16.11■□□□□ 0.17
COL8A1-202ENST00000273342 NUCB1Q02818 461 aa16.11■□□□□ 0.17
COL8A1-202ENST00000273342 KIF2CQ99661 725 aa16.11■□□□□ 0.17
COL8A1-202ENST00000273342 APBB1O00213 710 aa16.11■□□□□ 0.17
COL8A1-202ENST00000273342 RRP9O43818 475 aaKnown RBP16.11■□□□□ 0.17
COL8A1-202ENST00000273342 SRPK2P78362 688 aaKnown RBP16.11■□□□□ 0.17
COL8A1-202ENST00000273342 RAB3GAP1Q15042 981 aa16.11■□□□□ 0.17
COL8A1-202ENST00000273342 NASPP49321 788 aaPredicted RBP16.1■□□□□ 0.17
COL8A1-202ENST00000273342 RBM25P49756 843 aaKnown RBP16.1■□□□□ 0.17
COL8A1-202ENST00000273342 KIAA1211Q6ZU35 1233 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms