RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 MYOM1P52179 1685 aa15.78■□□□□ 0.12
CHMP3-201ENST00000263856 RWDD1Q9H446 243 aaPredicted RBP15.78■□□□□ 0.12
CHMP3-201ENST00000263856 TRPM2O94759 1503 aa15.77■□□□□ 0.12
CHMP3-201ENST00000263856 SPHKAPQ2M3C7 1700 aa15.77■□□□□ 0.12
CHMP3-201ENST00000263856 NOS1P29475 1434 aa15.77■□□□□ 0.11
CHMP3-201ENST00000263856 TBC1D2Q9BYX2 928 aa15.77■□□□□ 0.11
CHMP3-201ENST00000263856 CABP2Q9NPB3 220 aa15.77■□□□□ 0.11
CHMP3-201ENST00000263856 ABCC1P33527 1531 aa15.76■□□□□ 0.11
CHMP3-201ENST00000263856 NPC1L1Q9UHC9 1359 aa15.75■□□□□ 0.11
CHMP3-201ENST00000263856 CLASP1Q7Z460 1538 aa15.74■□□□□ 0.11
CHMP3-201ENST00000263856 GGNBP2Q9H3C7 697 aa15.74■□□□□ 0.11
CHMP3-201ENST00000263856 MYH16Q9H6N6 1097 aa15.74■□□□□ 0.11
CHMP3-201ENST00000263856 EXOSC9Q06265 439 aaKnown RBP15.74■□□□□ 0.11
CHMP3-201ENST00000263856 ZKSCAN2Q63HK3 967 aa15.74■□□□□ 0.11
CHMP3-201ENST00000263856 DZIP1LQ8IYY4 767 aaKnown RBP15.74■□□□□ 0.11
CHMP3-201ENST00000263856 STAC3Q96MF2 364 aa15.74■□□□□ 0.11
CHMP3-201ENST00000263856 CEP152O94986 1710 aa15.73■□□□□ 0.11
CHMP3-201ENST00000263856 POLR3AO14802 1390 aaPredicted RBP15.73■□□□□ 0.11
CHMP3-201ENST00000263856 SRPK2P78362 688 aaKnown RBP15.73■□□□□ 0.11
CHMP3-201ENST00000263856 SLC24A1O60721 1099 aa15.72■□□□□ 0.11
CHMP3-201ENST00000263856 ZCCHC11Q5TAX3 1644 aaKnown RBP15.72■□□□□ 0.11
CHMP3-201ENST00000263856 MVPQ14764 893 aaKnown RBP15.72■□□□□ 0.11
CHMP3-201ENST00000263856 TBC1D32Q96NH3 1257 aa15.72■□□□□ 0.11
CHMP3-201ENST00000263856 FOXD4L1Q9NU39 408 aa15.71■□□□□ 0.11
CHMP3-201ENST00000263856 NGEFQ8N5V2 710 aa15.71■□□□□ 0.11
CHMP3-201ENST00000263856 PTPRTO14522 1441 aa15.71■□□□□ 0.11
CHMP3-201ENST00000263856 ABCA6Q8N139 1617 aa15.71■□□□□ 0.1
CHMP3-201ENST00000263856 C22orf23Q9BZE7 217 aa15.71■□□□□ 0.1
CHMP3-201ENST00000263856 FANCAO15360 1455 aa15.7■□□□□ 0.1
CHMP3-201ENST00000263856 ZFYVE16Q7Z3T8 1539 aa15.7■□□□□ 0.1
CHMP3-201ENST00000263856 NINLQ9Y2I6 1382 aa15.7■□□□□ 0.1
CHMP3-201ENST00000263856 WDR63Q8IWG1 891 aa15.69■□□□□ 0.1
CHMP3-201ENST00000263856 LNPKQ9C0E8 428 aa15.69■□□□□ 0.1
CHMP3-201ENST00000263856 ADGRL1O94910 1474 aa15.68■□□□□ 0.1
CHMP3-201ENST00000263856 ATP7AQ04656 1500 aa15.68■□□□□ 0.1
CHMP3-201ENST00000263856 TRIM27P14373 513 aa15.67■□□□□ 0.1
CHMP3-201ENST00000263856 SSH1Q8WYL5 1049 aa15.67■□□□□ 0.1
CHMP3-201ENST00000263856 NOB1Q9ULX3 412 aaKnown RBP15.67■□□□□ 0.1
CHMP3-201ENST00000263856 MAP3K4Q9Y6R4 1608 aa15.67■□□□□ 0.1
CHMP3-201ENST00000263856 MINK1Q8N4C8 1332 aaPredicted RBP15.66■□□□□ 0.1
CHMP3-201ENST00000263856 ELL2O00472 640 aaPredicted RBP15.66■□□□□ 0.1
CHMP3-201ENST00000263856 HSP90AA1P07900 732 aaKnown RBP15.66■□□□□ 0.1
CHMP3-201ENST00000263856 HSCBQ8IWL3 235 aa15.66■□□□□ 0.1
CHMP3-201ENST00000263856 PANK2Q9BZ23 570 aa15.66■□□□□ 0.1
CHMP3-201ENST00000263856 TET3O43151 1660 aa15.66■□□□□ 0.1
CHMP3-201ENST00000263856 GOLGA6L3A6NEY3 463 aa15.66■□□□□ 0.1
CHMP3-201ENST00000263856 FBLN1P23142 703 aa15.66■□□□□ 0.1
CHMP3-201ENST00000263856 L1TD1Q5T7N2 865 aaKnown RBP15.65■□□□□ 0.1
CHMP3-201ENST00000263856 TMEM57Q8N5G2 664 aa15.65■□□□□ 0.1
CHMP3-201ENST00000263856 SHROOM2Q13796 1616 aa15.65■□□□□ 0.1
CHMP3-201ENST00000263856 EVC2Q86UK5 1308 aa15.65■□□□□ 0.1
CHMP3-201ENST00000263856 RIPK4P57078 832 aa15.65■□□□□ 0.1
CHMP3-201ENST00000263856 C1orf115Q9H7X2 142 aa15.65■□□□□ 0.1
CHMP3-201ENST00000263856 ANTXR1Q9H6X2 564 aa15.65■□□□□ 0.1
CHMP3-201ENST00000263856 KIF1BO60333 1816 aa15.64■□□□□ 0.09
CHMP3-201ENST00000263856 FAM43AQ8N2R8 423 aa15.64■□□□□ 0.09
CHMP3-201ENST00000263856 RRAGDQ9NQL2 400 aaPredicted RBP15.64■□□□□ 0.09
CHMP3-201ENST00000263856 RTEL1-TNFRSF6BF6WH68 1400 aa15.64■□□□□ 0.09
CHMP3-201ENST00000263856 MCM4P33991 863 aa15.63■□□□□ 0.09
CHMP3-201ENST00000263856 TMPOP42166 694 aaKnown RBP15.63■□□□□ 0.09
CHMP3-201ENST00000263856 NLRP1Q9C000 1473 aa15.63■□□□□ 0.09
CHMP3-201ENST00000263856 C14orf93Q9H972 538 aaKnown RBP15.63■□□□□ 0.09
CHMP3-201ENST00000263856 VIRMAQ69YN4 1812 aaKnown RBP15.62■□□□□ 0.09
CHMP3-201ENST00000263856 ATF7IPQ6VMQ6 1270 aa15.62■□□□□ 0.09
CHMP3-201ENST00000263856 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.62■□□□□ 0.09
CHMP3-201ENST00000263856 DDX19BQ9UMR2 479 aa15.62■□□□□ 0.09
CHMP3-201ENST00000263856 MROH2AA6NES4 1674 aa15.61■□□□□ 0.09
CHMP3-201ENST00000263856 HSP90AB1P08238 724 aaKnown RBP15.61■□□□□ 0.09
CHMP3-201ENST00000263856 TRAK2O60296 914 aa15.61■□□□□ 0.09
CHMP3-201ENST00000263856 NAP1L5Q96NT1 182 aaPredicted RBP15.61■□□□□ 0.09
CHMP3-201ENST00000263856 THUMPD2Q9BTF0 503 aaKnown RBP15.61■□□□□ 0.09
CHMP3-201ENST00000263856 CHMP5Q9NZZ3 219 aa15.61■□□□□ 0.09
CHMP3-201ENST00000263856 XRCC6P12956 609 aaKnown RBP eCLIP15.6■□□□□ 0.09
CHMP3-201ENST00000263856 HMOX1P09601 288 aa15.59■□□□□ 0.09
CHMP3-201ENST00000263856 ANKRD45Q5TZF3 282 aa15.59■□□□□ 0.09
CHMP3-201ENST00000263856 MYOM2P54296 1465 aa15.59■□□□□ 0.09
CHMP3-201ENST00000263856 ZNF518AQ6AHZ1 1483 aa15.59■□□□□ 0.09
CHMP3-201ENST00000263856 SHPRHQ149N8 1683 aa15.59■□□□□ 0.09
CHMP3-201ENST00000263856 PHF23Q9BUL5 403 aaPredicted RBP15.58■□□□□ 0.08
CHMP3-201ENST00000263856 TRIM35Q9UPQ4 493 aa15.58■□□□□ 0.08
CHMP3-201ENST00000263856 AAMPQ13685 434 aa15.57■□□□□ 0.08
CHMP3-201ENST00000263856 CCDC27Q2M243 656 aa15.57■□□□□ 0.08
CHMP3-201ENST00000263856 IQSEC2Q5JU85 1478 aa15.57■□□□□ 0.08
CHMP3-201ENST00000263856 QRICH2Q9H0J4 1663 aa15.57■□□□□ 0.08
CHMP3-201ENST00000263856 NPM1P06748 294 aaKnown RBP eCLIP15.57■□□□□ 0.08
CHMP3-201ENST00000263856 DIAPH1O60610 1272 aaKnown RBP15.56■□□□□ 0.08
CHMP3-201ENST00000263856 KIAA1210Q9ULL0 1709 aa15.56■□□□□ 0.08
CHMP3-201ENST00000263856 APBB1O00213 710 aa15.55■□□□□ 0.08
CHMP3-201ENST00000263856 RSPH6AQ9H0K4 717 aa15.55■□□□□ 0.08
CHMP3-201ENST00000263856 A0A1W2PP64 1363 aa15.55■□□□□ 0.08
CHMP3-201ENST00000263856 VGFO15240 615 aaPredicted RBP15.55■□□□□ 0.08
CHMP3-201ENST00000263856 RAPGEF3O95398 923 aa15.55■□□□□ 0.08
CHMP3-201ENST00000263856 PPRC1Q5VV67 1664 aaKnown RBP15.55■□□□□ 0.08
CHMP3-201ENST00000263856 SBNO2Q9Y2G9 1366 aa15.55■□□□□ 0.08
CHMP3-201ENST00000263856 IPO8O15397 1037 aaKnown RBP15.55■□□□□ 0.08
CHMP3-201ENST00000263856 PRAM1Q96QH2 718 aa15.55■□□□□ 0.08
CHMP3-201ENST00000263856 DEPDC5O75140 1603 aa15.54■□□□□ 0.08
CHMP3-201ENST00000263856 ANKRD36BQ8N2N9 1353 aa15.54■□□□□ 0.08
CHMP3-201ENST00000263856 PRKAR2BP31323 418 aa15.54■□□□□ 0.08
CHMP3-201ENST00000263856 STAG3Q9UJ98 1225 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms