RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ZMYM3Q14202 1370 aa13.11□□□□□ -0.31
LIG3-201ENST00000262327 NEUROD2Q15784 382 aa13.11□□□□□ -0.31
LIG3-201ENST00000262327 IFT172Q9UG01 1749 aa13.11□□□□□ -0.31
LIG3-201ENST00000262327 CFAP70Q5T0N1 1121 aa13.11□□□□□ -0.31
LIG3-201ENST00000262327 SENP3Q9H4L4 574 aaPredicted RBP13.11□□□□□ -0.31
LIG3-201ENST00000262327 CFAP65Q6ZU64 1925 aaKnown RBP13.11□□□□□ -0.31
LIG3-201ENST00000262327 KDM2BQ8NHM5 1336 aa13.09□□□□□ -0.31
LIG3-201ENST00000262327 IDI1Q13907 227 aa13.09□□□□□ -0.31
LIG3-201ENST00000262327 NRXN1Q9ULB1 1477 aa13.09□□□□□ -0.31
LIG3-201ENST00000262327 KIAA1210Q9ULL0 1709 aa13.09□□□□□ -0.31
LIG3-201ENST00000262327 FBXO31Q5XUX0 539 aaPredicted RBP13.09□□□□□ -0.31
LIG3-201ENST00000262327 PLEKHG5O94827 1062 aa13.08□□□□□ -0.32
LIG3-201ENST00000262327 SLFN5Q08AF3 891 aa13.08□□□□□ -0.32
LIG3-201ENST00000262327 CHGAP10645 457 aaKnown RBP13.08□□□□□ -0.32
LIG3-201ENST00000262327 DAXXQ9UER7 740 aaPredicted RBP13.08□□□□□ -0.32
LIG3-201ENST00000262327 CENPQQ7L2Z9 268 aaPredicted RBP13.07□□□□□ -0.32
LIG3-201ENST00000262327 RRP7AQ9Y3A4 280 aaKnown RBP13.07□□□□□ -0.32
LIG3-201ENST00000262327 PPLO60437 1756 aa13.07□□□□□ -0.32
LIG3-201ENST00000262327 TMEM131LA2VDJ0 1609 aa13.07□□□□□ -0.32
LIG3-201ENST00000262327 ZNF521Q96K83 1311 aa13.07□□□□□ -0.32
LIG3-201ENST00000262327 C8orf34Q49A92 452 aa13.06□□□□□ -0.32
LIG3-201ENST00000262327 ZFYVE9O95405 1425 aa13.06□□□□□ -0.32
LIG3-201ENST00000262327 CARD14Q9BXL6 1004 aa13.06□□□□□ -0.32
LIG3-201ENST00000262327 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.05□□□□□ -0.32
LIG3-201ENST00000262327 ADGRF5Q8IZF2 1346 aa13.05□□□□□ -0.32
LIG3-201ENST00000262327 PPM1GO15355 546 aaPredicted RBP13.05□□□□□ -0.32
LIG3-201ENST00000262327 CDCA8Q53HL2 280 aa13.05□□□□□ -0.32
LIG3-201ENST00000262327 NEXMIFQ5QGS0 1516 aa13.04□□□□□ -0.32
LIG3-201ENST00000262327 VGFO15240 615 aaPredicted RBP13.04□□□□□ -0.32
LIG3-201ENST00000262327 NFKBIBQ15653 356 aa13.04□□□□□ -0.32
LIG3-201ENST00000262327 FAM161AQ3B820 660 aa13.04□□□□□ -0.32
LIG3-201ENST00000262327 DDRGK1Q96HY6 314 aa13.04□□□□□ -0.32
LIG3-201ENST00000262327 IGHDP01880 384 aa13.04□□□□□ -0.32
LIG3-201ENST00000262327 PANK1Q8TE04 598 aa13.04□□□□□ -0.32
LIG3-201ENST00000262327 FRAT1Q92837 279 aaPredicted RBP13.04□□□□□ -0.32
LIG3-201ENST00000262327 TNRQ92752 1358 aa13.03□□□□□ -0.32
LIG3-201ENST00000262327 CANXP27824 592 aaKnown RBP13.03□□□□□ -0.32
LIG3-201ENST00000262327 COG6Q9Y2V7 657 aa13.03□□□□□ -0.32
LIG3-201ENST00000262327 FER1L4A9Z1Z3 1794 aa13.03□□□□□ -0.32
LIG3-201ENST00000262327 PIK3C2GO75747 1445 aa13.03□□□□□ -0.32
LIG3-201ENST00000262327 SCAF11Q99590 1463 aaKnown RBP13.02□□□□□ -0.32
LIG3-201ENST00000262327 BCL2L13Q9BXK5 485 aa13.02□□□□□ -0.32
LIG3-201ENST00000262327 KDM5AP29375 1690 aaKnown RBP13.02□□□□□ -0.33
LIG3-201ENST00000262327 ASXL1Q8IXJ9 1541 aa13.01□□□□□ -0.33
LIG3-201ENST00000262327 SETBP1Q9Y6X0 1596 aa13.01□□□□□ -0.33
LIG3-201ENST00000262327 TRAK1Q9UPV9 953 aa13.01□□□□□ -0.33
LIG3-201ENST00000262327 TNNQ9UQP3 1299 aa13.01□□□□□ -0.33
LIG3-201ENST00000262327 A2ML1A8K2U0 1454 aa13.01□□□□□ -0.33
LIG3-201ENST00000262327 NUTM2DQ5VT03 806 aaPredicted RBP13.01□□□□□ -0.33
LIG3-201ENST00000262327 INSRP06213 1382 aa13□□□□□ -0.33
LIG3-201ENST00000262327 C14orf93Q9H972 538 aaKnown RBP13□□□□□ -0.33
LIG3-201ENST00000262327 STAG3Q9UJ98 1225 aa13□□□□□ -0.33
LIG3-201ENST00000262327 BRPF3Q9ULD4 1205 aa13□□□□□ -0.33
LIG3-201ENST00000262327 NLRP1Q9C000 1473 aa13□□□□□ -0.33
LIG3-201ENST00000262327 IQGAP1P46940 1657 aa13□□□□□ -0.33
LIG3-201ENST00000262327 C3P01024 1663 aa12.99□□□□□ -0.33
LIG3-201ENST00000262327 TMEM132EQ6IEE7 984 aa12.99□□□□□ -0.33
LIG3-201ENST00000262327 SLC12A5Q9H2X9 1139 aa12.99□□□□□ -0.33
LIG3-201ENST00000262327 USP35Q9P2H5 1018 aa12.99□□□□□ -0.33
LIG3-201ENST00000262327 MYO5BQ9ULV0 1848 aa12.99□□□□□ -0.33
LIG3-201ENST00000262327 FRAT2O75474 233 aaPredicted RBP12.99□□□□□ -0.33
LIG3-201ENST00000262327 SEC24BO95487 1268 aa12.99□□□□□ -0.33
LIG3-201ENST00000262327 TRMT2AQ8IZ69 625 aaKnown RBP12.99□□□□□ -0.33
LIG3-201ENST00000262327 CLUAP1Q96AJ1 413 aa12.98□□□□□ -0.33
LIG3-201ENST00000262327 E9PSI1 815 aa12.98□□□□□ -0.33
LIG3-201ENST00000262327 EIF3AQ14152 1382 aaKnown RBP12.98□□□□□ -0.33
LIG3-201ENST00000262327 ADAMTSL3P82987 1691 aa12.97□□□□□ -0.33
LIG3-201ENST00000262327 NKTRP30414 1462 aaKnown RBP12.97□□□□□ -0.33
LIG3-201ENST00000262327 WWC1Q8IX03 1113 aa12.97□□□□□ -0.33
LIG3-201ENST00000262327 CENPJQ9HC77 1338 aaPredicted RBP12.97□□□□□ -0.33
LIG3-201ENST00000262327 MORC1Q86VD1 984 aa12.97□□□□□ -0.33
LIG3-201ENST00000262327 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.97□□□□□ -0.33
LIG3-201ENST00000262327 HDGFP51858 240 aaKnown RBP12.96□□□□□ -0.33
LIG3-201ENST00000262327 GSE1Q14687 1217 aa12.96□□□□□ -0.33
LIG3-201ENST00000262327 RIMS2Q9UQ26 1411 aa12.96□□□□□ -0.33
LIG3-201ENST00000262327 PODXL2Q9NZ53 605 aa12.96□□□□□ -0.34
LIG3-201ENST00000262327 SAFB2Q14151 953 aaKnown RBP eCLIP12.95□□□□□ -0.34
LIG3-201ENST00000262327 ADGRB1O14514 1584 aa12.95□□□□□ -0.34
LIG3-201ENST00000262327 CEBPAP49715 358 aaPredicted RBP12.94□□□□□ -0.34
LIG3-201ENST00000262327 UBR1Q8IWV7 1749 aa12.94□□□□□ -0.34
LIG3-201ENST00000262327 RLBP1P12271 317 aa12.94□□□□□ -0.34
LIG3-201ENST00000262327 TCP11L2Q8N4U5 519 aa12.93□□□□□ -0.34
LIG3-201ENST00000262327 SLKQ9H2G2 1235 aaPredicted RBP12.93□□□□□ -0.34
LIG3-201ENST00000262327 RIMS1Q86UR5 1692 aaKnown RBP12.93□□□□□ -0.34
LIG3-201ENST00000262327 MYOM1P52179 1685 aa12.92□□□□□ -0.34
LIG3-201ENST00000262327 MYO3AQ8NEV4 1616 aa12.92□□□□□ -0.34
LIG3-201ENST00000262327 TMEM2Q9UHN6 1383 aa12.92□□□□□ -0.34
LIG3-201ENST00000262327 NSD3Q9BZ95 1437 aa12.92□□□□□ -0.34
LIG3-201ENST00000262327 MTHFSP49914 203 aa12.92□□□□□ -0.34
LIG3-201ENST00000262327 PCDHB15Q9Y5E8 787 aa12.91□□□□□ -0.34
LIG3-201ENST00000262327 SPRYD3Q8NCJ5 442 aa12.91□□□□□ -0.34
LIG3-201ENST00000262327 USP19O94966 1318 aa12.91□□□□□ -0.34
LIG3-201ENST00000262327 SBNO2Q9Y2G9 1366 aa12.9□□□□□ -0.34
LIG3-201ENST00000262327 ALKQ9UM73 1620 aa12.9□□□□□ -0.34
LIG3-201ENST00000262327 NPC1L1Q9UHC9 1359 aa12.9□□□□□ -0.35
LIG3-201ENST00000262327 RARSP54136 660 aaKnown RBP12.9□□□□□ -0.35
LIG3-201ENST00000262327 CGNL1Q0VF96 1302 aa12.89□□□□□ -0.35
LIG3-201ENST00000262327 SLIT1O75093 1534 aa12.89□□□□□ -0.35
LIG3-201ENST00000262327 ARXQ96QS3 562 aa12.89□□□□□ -0.35
LIG3-201ENST00000262327 ARHGAP23Q9P227 1491 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms