RNA–Protein interactions for RNA: ENST00000257262.12

TMEM258-201, Transcript of transmembrane protein 258, humanhuman

TSL 3

Gene TMEM258, Length 468 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM258-201ENST00000257262 MSH6P52701 1360 aa12.39□□□□□ -0.43
TMEM258-201ENST00000257262 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.39□□□□□ -0.43
TMEM258-201ENST00000257262 PCGF6Q9BYE7 350 aa12.38□□□□□ -0.43
TMEM258-201ENST00000257262 LAMC1P11047 1609 aa12.37□□□□□ -0.43
TMEM258-201ENST00000257262 NEUROD1Q13562 356 aa12.37□□□□□ -0.43
TMEM258-201ENST00000257262 STAC3Q96MF2 364 aa12.37□□□□□ -0.43
TMEM258-201ENST00000257262 C19orf44Q9H6X5 657 aa12.37□□□□□ -0.43
TMEM258-201ENST00000257262 STK26Q9P289 416 aa12.37□□□□□ -0.43
TMEM258-201ENST00000257262 ASXL1Q8IXJ9 1541 aa12.37□□□□□ -0.43
TMEM258-201ENST00000257262 ROBO2Q9HCK4 1378 aa12.35□□□□□ -0.43
TMEM258-201ENST00000257262 NALCNQ8IZF0 1738 aa12.35□□□□□ -0.43
TMEM258-201ENST00000257262 SLAIN2Q9P270 581 aa12.35□□□□□ -0.43
TMEM258-201ENST00000257262 KNDC1Q76NI1 1749 aa12.34□□□□□ -0.43
TMEM258-201ENST00000257262 LRPPRCP42704 1394 aaKnown RBP12.34□□□□□ -0.43
TMEM258-201ENST00000257262 ATF3P18847 181 aa12.34□□□□□ -0.43
TMEM258-201ENST00000257262 PTCH1Q13635 1447 aa12.34□□□□□ -0.43
TMEM258-201ENST00000257262 PRAG1Q86YV5 1406 aa12.34□□□□□ -0.43
TMEM258-201ENST00000257262 YTHDC2Q9H6S0 1430 aaKnown RBP12.34□□□□□ -0.43
TMEM258-201ENST00000257262 ROBO1Q9Y6N7 1651 aa12.33□□□□□ -0.44
TMEM258-201ENST00000257262 HSPA1LP34931 641 aa12.33□□□□□ -0.44
TMEM258-201ENST00000257262 WAPLQ7Z5K2 1190 aa12.33□□□□□ -0.44
TMEM258-201ENST00000257262 CADPS2Q86UW7 1296 aa12.33□□□□□ -0.44
TMEM258-201ENST00000257262 L3MBTL2Q969R5 705 aa12.33□□□□□ -0.44
TMEM258-201ENST00000257262 ABCC11Q96J66 1382 aa12.32□□□□□ -0.44
TMEM258-201ENST00000257262 TECPR2O15040 1411 aa12.32□□□□□ -0.44
TMEM258-201ENST00000257262 FAM135BQ49AJ0 1406 aa12.32□□□□□ -0.44
TMEM258-201ENST00000257262 ADGRB1O14514 1584 aa12.31□□□□□ -0.44
TMEM258-201ENST00000257262 ADGRL3Q9HAR2 1447 aa12.31□□□□□ -0.44
TMEM258-201ENST00000257262 DCCP43146 1447 aa12.3□□□□□ -0.44
TMEM258-201ENST00000257262 SIRT1Q96EB6 747 aa12.3□□□□□ -0.44
TMEM258-201ENST00000257262 PLEKHH1Q9ULM0 1364 aa12.3□□□□□ -0.44
TMEM258-201ENST00000257262 KIAA1210Q9ULL0 1709 aa12.29□□□□□ -0.44
TMEM258-201ENST00000257262 TRAK1Q9UPV9 953 aa12.29□□□□□ -0.44
TMEM258-201ENST00000257262 MST1RQ04912 1400 aa12.28□□□□□ -0.44
TMEM258-201ENST00000257262 NBPF1Q3BBV0 1214 aa12.27□□□□□ -0.45
TMEM258-201ENST00000257262 PRAM1Q96QH2 718 aa12.27□□□□□ -0.45
TMEM258-201ENST00000257262 DLC1Q96QB1 1528 aa12.27□□□□□ -0.45
TMEM258-201ENST00000257262 PHLPP1O60346 1717 aa12.26□□□□□ -0.45
TMEM258-201ENST00000257262 SAFB2Q14151 953 aaKnown RBP eCLIP12.26□□□□□ -0.45
TMEM258-201ENST00000257262 BRINP3Q76B58 766 aa12.26□□□□□ -0.45
TMEM258-201ENST00000257262 POGKQ9P215 609 aa12.26□□□□□ -0.45
TMEM258-201ENST00000257262 C1orf167Q5SNV9 1468 aa12.25□□□□□ -0.45
TMEM258-201ENST00000257262 CDC42BPGQ6DT37 1551 aa12.25□□□□□ -0.45
TMEM258-201ENST00000257262 TRPM1Q7Z4N2 1603 aa12.24□□□□□ -0.45
TMEM258-201ENST00000257262 ARHGEF28Q8N1W1 1705 aaKnown RBP12.24□□□□□ -0.45
TMEM258-201ENST00000257262 TONSLQ96HA7 1378 aa12.24□□□□□ -0.45
TMEM258-201ENST00000257262 NUTM2FA1L443 756 aa12.23□□□□□ -0.45
TMEM258-201ENST00000257262 ORAI2Q96SN7 254 aa12.23□□□□□ -0.45
TMEM258-201ENST00000257262 FMN2Q9NZ56 1722 aa12.23□□□□□ -0.45
TMEM258-201ENST00000257262 NBPF8Q3BBV2 869 aa12.22□□□□□ -0.45
TMEM258-201ENST00000257262 RGPD8O14715 1765 aaPredicted RBP12.22□□□□□ -0.45
TMEM258-201ENST00000257262 COL16A1Q07092 1604 aaPredicted RBP12.22□□□□□ -0.45
TMEM258-201ENST00000257262 NHSL1Q5SYE7 1610 aa12.22□□□□□ -0.45
TMEM258-201ENST00000257262 AHDC1Q5TGY3 1603 aaPredicted RBP12.22□□□□□ -0.45
TMEM258-201ENST00000257262 ESCO1Q5FWF5 840 aa12.21□□□□□ -0.45
TMEM258-201ENST00000257262 DDX17Q92841 729 aaKnown RBP12.21□□□□□ -0.45
TMEM258-201ENST00000257262 HIRIP3Q9BW71 556 aaPredicted RBP12.21□□□□□ -0.45
TMEM258-201ENST00000257262 MED1Q15648 1581 aaPredicted RBP12.21□□□□□ -0.46
TMEM258-201ENST00000257262 MINK1Q8N4C8 1332 aaPredicted RBP12.2□□□□□ -0.46
TMEM258-201ENST00000257262 ADGRB2O60241 1585 aa12.18□□□□□ -0.46
TMEM258-201ENST00000257262 CLSPNQ9HAW4 1339 aa12.18□□□□□ -0.46
TMEM258-201ENST00000257262 CCER1Q8TC90 406 aaPredicted RBP12.18□□□□□ -0.46
TMEM258-201ENST00000257262 ROCK2O75116 1388 aaKnown RBP12.18□□□□□ -0.46
TMEM258-201ENST00000257262 WASLO00401 505 aaPredicted RBP12.17□□□□□ -0.46
TMEM258-201ENST00000257262 USP32Q8NFA0 1604 aa12.17□□□□□ -0.46
TMEM258-201ENST00000257262 FOXO3O43524 673 aa12.16□□□□□ -0.46
TMEM258-201ENST00000257262 JCADQ9P266 1359 aa12.16□□□□□ -0.46
TMEM258-201ENST00000257262 QRICH2Q9H0J4 1663 aa12.16□□□□□ -0.46
TMEM258-201ENST00000257262 CENPJQ9HC77 1338 aaPredicted RBP12.15□□□□□ -0.46
TMEM258-201ENST00000257262 LRRC59Q96AG4 307 aaKnown RBP12.15□□□□□ -0.46
TMEM258-201ENST00000257262 AKT1S1Q96B36 256 aa12.15□□□□□ -0.46
TMEM258-201ENST00000257262 KIF1AQ12756 1690 aa12.15□□□□□ -0.46
TMEM258-201ENST00000257262 SHPRHQ149N8 1683 aa12.15□□□□□ -0.46
TMEM258-201ENST00000257262 SOS2Q07890 1332 aaPredicted RBP12.14□□□□□ -0.47
TMEM258-201ENST00000257262 CDK19Q9BWU1 502 aa12.14□□□□□ -0.47
TMEM258-201ENST00000257262 TIMELESSQ9UNS1 1208 aa12.14□□□□□ -0.47
TMEM258-201ENST00000257262 GPRASP1Q5JY77 1395 aa12.14□□□□□ -0.47
TMEM258-201ENST00000257262 NPHP3Q7Z494 1330 aa12.13□□□□□ -0.47
TMEM258-201ENST00000257262 PRR36Q9H6K5 1346 aa12.13□□□□□ -0.47
TMEM258-201ENST00000257262 ANKARQ7Z5J8 1434 aa12.13□□□□□ -0.47
TMEM258-201ENST00000257262 TULP4Q9NRJ4 1543 aa12.13□□□□□ -0.47
TMEM258-201ENST00000257262 XPCQ01831 940 aaPredicted RBP12.13□□□□□ -0.47
TMEM258-201ENST00000257262 PMFBP1Q8TBY8 1022 aa12.13□□□□□ -0.47
TMEM258-201ENST00000257262 CARD11Q9BXL7 1154 aa12.13□□□□□ -0.47
TMEM258-201ENST00000257262 PHF8Q9UPP1 1060 aa12.13□□□□□ -0.47
TMEM258-201ENST00000257262 RALGAPBQ86X10 1494 aa12.13□□□□□ -0.47
TMEM258-201ENST00000257262 EIF3AQ14152 1382 aaKnown RBP12.12□□□□□ -0.47
TMEM258-201ENST00000257262 PXDNQ92626 1479 aa12.12□□□□□ -0.47
TMEM258-201ENST00000257262 KRT28Q7Z3Y7 464 aa12.11□□□□□ -0.47
TMEM258-201ENST00000257262 NUDT16Q96DE0 195 aaKnown RBP12.11□□□□□ -0.47
TMEM258-201ENST00000257262 ITSN1Q15811 1721 aa12.11□□□□□ -0.47
TMEM258-201ENST00000257262 SPATA31A6Q5VVP1 1343 aa12.11□□□□□ -0.47
TMEM258-201ENST00000257262 ATP7BP35670 1465 aa12.09□□□□□ -0.47
TMEM258-201ENST00000257262 PNPLA6Q8IY17 1366 aa12.09□□□□□ -0.47
TMEM258-201ENST00000257262 NUTM2BA6NNL0 878 aaPredicted RBP12.09□□□□□ -0.47
TMEM258-201ENST00000257262 NUTM2EB1AL46 878 aaPredicted RBP12.09□□□□□ -0.47
TMEM258-201ENST00000257262 SRPK2P78362 688 aaKnown RBP12.09□□□□□ -0.47
TMEM258-201ENST00000257262 PSME1Q06323 249 aa12.09□□□□□ -0.47
TMEM258-201ENST00000257262 MKRN4PQ13434 485 aaPredicted RBP12.09□□□□□ -0.47
TMEM258-201ENST00000257262 NUTM2AQ8IVF1 878 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms