RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 ATAD2Q6PL18 1390 aa31.06■■■□□ 2.56
MSX2-201ENST00000239243 SENP3Q9H4L4 574 aaPredicted RBP31.06■■■□□ 2.56
MSX2-201ENST00000239243 SAFB2Q14151 953 aaKnown RBP eCLIP31.05■■■□□ 2.56
MSX2-201ENST00000239243 UBR1Q8IWV7 1749 aa31.05■■■□□ 2.56
MSX2-201ENST00000239243 NLRP1Q9C000 1473 aa31.04■■■□□ 2.56
MSX2-201ENST00000239243 NRXN3Q9Y4C0 1643 aa31.04■■■□□ 2.56
MSX2-201ENST00000239243 CGNL1Q0VF96 1302 aa31.03■■■□□ 2.56
MSX2-201ENST00000239243 CABP2Q9NPB3 220 aa31.03■■■□□ 2.56
MSX2-201ENST00000239243 NSD2O96028 1365 aa31.03■■■□□ 2.56
MSX2-201ENST00000239243 TRHP20396 242 aaPredicted RBP31.02■■■□□ 2.56
MSX2-201ENST00000239243 SRPK2P78362 688 aaKnown RBP31.02■■■□□ 2.56
MSX2-201ENST00000239243 ABCC11Q96J66 1382 aa31.02■■■□□ 2.56
MSX2-201ENST00000239243 ADAMTS8Q9UP79 889 aa31.01■■■□□ 2.56
MSX2-201ENST00000239243 MINK1Q8N4C8 1332 aaPredicted RBP30.99■■■□□ 2.55
MSX2-201ENST00000239243 TMEM2Q9UHN6 1383 aa30.99■■■□□ 2.55
MSX2-201ENST00000239243 MORC1Q86VD1 984 aa30.98■■■□□ 2.55
MSX2-201ENST00000239243 POLR3AO14802 1390 aaPredicted RBP30.96■■■□□ 2.55
MSX2-201ENST00000239243 SENP3-EIF4A1A0A087X0R7 540 aa30.96■■■□□ 2.55
MSX2-201ENST00000239243 FER1L4A9Z1Z3 1794 aa30.95■■■□□ 2.55
MSX2-201ENST00000239243 KNDC1Q76NI1 1749 aa30.94■■■□□ 2.54
MSX2-201ENST00000239243 C3P01024 1663 aa30.94■■■□□ 2.54
MSX2-201ENST00000239243 RNF123Q5XPI4 1314 aa30.93■■■□□ 2.54
MSX2-201ENST00000239243 TERF2IPQ9NYB0 399 aa30.93■■■□□ 2.54
MSX2-201ENST00000239243 IRX6P78412 446 aaPredicted RBP30.92■■■□□ 2.54
MSX2-201ENST00000239243 A0A1W2PP64 1363 aa30.91■■■□□ 2.54
MSX2-201ENST00000239243 SALL2Q9Y467 1007 aaPredicted RBP30.9■■■□□ 2.54
MSX2-201ENST00000239243 SIRT1Q96EB6 747 aa30.9■■■□□ 2.54
MSX2-201ENST00000239243 CDK19Q9BWU1 502 aa30.9■■■□□ 2.54
MSX2-201ENST00000239243 TECPR2O15040 1411 aa30.9■■■□□ 2.54
MSX2-201ENST00000239243 METP08581 1390 aa30.89■■■□□ 2.54
MSX2-201ENST00000239243 FAM135BQ49AJ0 1406 aa30.89■■■□□ 2.53
MSX2-201ENST00000239243 PPP4R2Q9NY27 417 aa30.86■■■□□ 2.53
MSX2-201ENST00000239243 CPS1P31327 1500 aa30.85■■■□□ 2.53
MSX2-201ENST00000239243 PLEKHG1Q9ULL1 1385 aa30.85■■■□□ 2.53
MSX2-201ENST00000239243 HDGFL2Q7Z4V5 671 aaPredicted RBP30.85■■■□□ 2.53
MSX2-201ENST00000239243 WAPLQ7Z5K2 1190 aa30.84■■■□□ 2.53
MSX2-201ENST00000239243 CEBPAP49715 358 aaPredicted RBP30.83■■■□□ 2.53
MSX2-201ENST00000239243 CD163L1Q9NR16 1453 aa30.83■■■□□ 2.53
MSX2-201ENST00000239243 PLEKHH1Q9ULM0 1364 aa30.83■■■□□ 2.53
MSX2-201ENST00000239243 MED14O60244 1454 aa30.82■■■□□ 2.53
MSX2-201ENST00000239243 NGEFQ8N5V2 710 aa30.81■■■□□ 2.52
MSX2-201ENST00000239243 ANKRD26Q9UPS8 1709 aa30.81■■■□□ 2.52
MSX2-201ENST00000239243 SLIT1O75093 1534 aa30.81■■■□□ 2.52
MSX2-201ENST00000239243 ATP7BP35670 1465 aa30.8■■■□□ 2.52
MSX2-201ENST00000239243 CFAP53Q96M91 514 aa30.8■■■□□ 2.52
MSX2-201ENST00000239243 EID1Q9Y6B2 187 aa30.79■■■□□ 2.52
MSX2-201ENST00000239243 ADAMTS13Q76LX8 1427 aa30.79■■■□□ 2.52
MSX2-201ENST00000239243 ARHGAP23Q9P227 1491 aa30.78■■■□□ 2.52
MSX2-201ENST00000239243 TNNT2P45379 298 aaPredicted RBP30.78■■■□□ 2.52
MSX2-201ENST00000239243 RCAN3Q9UKA8 241 aa30.78■■■□□ 2.52
MSX2-201ENST00000239243 SHPRHQ149N8 1683 aa30.78■■■□□ 2.52
MSX2-201ENST00000239243 CDCA7LQ96GN5 454 aa30.76■■■□□ 2.51
MSX2-201ENST00000239243 WASLO00401 505 aaPredicted RBP30.75■■■□□ 2.51
MSX2-201ENST00000239243 CABP1Q9NZU7 370 aa30.75■■■□□ 2.51
MSX2-201ENST00000239243 TXNDC2Q86VQ3 553 aa30.75■■■□□ 2.51
MSX2-201ENST00000239243 ZNF521Q96K83 1311 aa30.75■■■□□ 2.51
MSX2-201ENST00000239243 MTHFSP49914 203 aa30.74■■■□□ 2.51
MSX2-201ENST00000239243 LTKP29376 864 aa30.74■■■□□ 2.51
MSX2-201ENST00000239243 THEMISQ8N1K5 641 aaPredicted RBP30.72■■■□□ 2.51
MSX2-201ENST00000239243 KIF20BQ96Q89 1820 aa30.72■■■□□ 2.51
MSX2-201ENST00000239243 CCDC146Q8IYE0 955 aa30.71■■■□□ 2.51
MSX2-201ENST00000239243 GOLGA2Q08379 1002 aa30.7■■■□□ 2.51
MSX2-201ENST00000239243 FYB1O15117 783 aa30.7■■■□□ 2.5
MSX2-201ENST00000239243 RRP1P56182 461 aaKnown RBP30.69■■■□□ 2.5
MSX2-201ENST00000239243 APAF1O14727 1248 aa30.68■■■□□ 2.5
MSX2-201ENST00000239243 GGNBP2Q9H3C7 697 aa30.67■■■□□ 2.5
MSX2-201ENST00000239243 ADGRB2O60241 1585 aa30.67■■■□□ 2.5
MSX2-201ENST00000239243 DIP2AQ14689 1571 aa30.67■■■□□ 2.5
MSX2-201ENST00000239243 PPIP5K1Q6PFW1 1433 aa30.66■■■□□ 2.5
MSX2-201ENST00000239243 ROBO2Q9HCK4 1378 aa30.65■■■□□ 2.5
MSX2-201ENST00000239243 CPSF1Q10570 1443 aaKnown RBP30.64■■■□□ 2.5
MSX2-201ENST00000239243 PLPPR3Q6T4P5 718 aa30.63■■■□□ 2.49
MSX2-201ENST00000239243 RUNDC1Q96C34 613 aa30.62■■■□□ 2.49
MSX2-201ENST00000239243 TBX22Q9Y458 520 aa30.62■■■□□ 2.49
MSX2-201ENST00000239243 EDC4Q6P2E9 1401 aaKnown RBP30.62■■■□□ 2.49
MSX2-201ENST00000239243 NUDT16Q96DE0 195 aaKnown RBP30.62■■■□□ 2.49
MSX2-201ENST00000239243 CCDC61Q9Y6R9 512 aa30.62■■■□□ 2.49
MSX2-201ENST00000239243 CDC42BPGQ6DT37 1551 aa30.62■■■□□ 2.49
MSX2-201ENST00000239243 DUSP27Q5VZP5 1158 aa30.61■■■□□ 2.49
MSX2-201ENST00000239243 RIMS1Q86UR5 1692 aaKnown RBP30.6■■■□□ 2.49
MSX2-201ENST00000239243 CEP170BQ9Y4F5 1589 aaPredicted RBP30.6■■■□□ 2.49
MSX2-201ENST00000239243 SLFN5Q08AF3 891 aa30.59■■■□□ 2.49
MSX2-201ENST00000239243 SLC26A8Q96RN1 970 aa30.57■■■□□ 2.48
MSX2-201ENST00000239243 IQSEC2Q5JU85 1478 aa30.57■■■□□ 2.48
MSX2-201ENST00000239243 MON2Q7Z3U7 1717 aa30.56■■■□□ 2.48
MSX2-201ENST00000239243 NCBP3Q53F19 620 aaKnown RBP30.56■■■□□ 2.48
MSX2-201ENST00000239243 TSHZ2Q9NRE2 1034 aa30.56■■■□□ 2.48
MSX2-201ENST00000239243 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.56■■■□□ 2.48
MSX2-201ENST00000239243 PTCH1Q13635 1447 aa30.56■■■□□ 2.48
MSX2-201ENST00000239243 PTPRUQ92729 1446 aa30.56■■■□□ 2.48
MSX2-201ENST00000239243 ITSN1Q15811 1721 aa30.55■■■□□ 2.48
MSX2-201ENST00000239243 E9PSI1 815 aa30.55■■■□□ 2.48
MSX2-201ENST00000239243 TRMT2AQ8IZ69 625 aaKnown RBP30.55■■■□□ 2.48
MSX2-201ENST00000239243 B4GALNT3Q6L9W6 998 aa30.55■■■□□ 2.48
MSX2-201ENST00000239243 COL3A1P02461 1466 aaPredicted RBP30.55■■■□□ 2.48
MSX2-201ENST00000239243 AKAP12Q02952 1782 aa30.54■■■□□ 2.48
MSX2-201ENST00000239243 ZNF692Q9BU19 519 aaPredicted RBP30.54■■■□□ 2.48
MSX2-201ENST00000239243 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.53■■■□□ 2.48
MSX2-201ENST00000239243 U2AF1L5P0DN76 240 aaPredicted RBP30.51■■■□□ 2.48
MSX2-201ENST00000239243 U2AF1Q01081 240 aaKnown RBP eCLIP30.51■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms