RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 NGEFQ8N5V2 710 aa15.88■□□□□ 0.13
NUP88-201ENST00000225696 TBC1D32Q96NH3 1257 aa15.88■□□□□ 0.13
NUP88-201ENST00000225696 KIAA1210Q9ULL0 1709 aa15.88■□□□□ 0.13
NUP88-201ENST00000225696 RTEL1-TNFRSF6BF6WH68 1400 aa15.87■□□□□ 0.13
NUP88-201ENST00000225696 MTHFSP49914 203 aa15.87■□□□□ 0.13
NUP88-201ENST00000225696 BECN1Q14457 450 aa15.87■□□□□ 0.13
NUP88-201ENST00000225696 NINLQ9Y2I6 1382 aa15.87■□□□□ 0.13
NUP88-201ENST00000225696 IQSEC2Q5JU85 1478 aa15.86■□□□□ 0.13
NUP88-201ENST00000225696 TMEM132EQ6IEE7 984 aa15.86■□□□□ 0.13
NUP88-201ENST00000225696 VWDEQ8N2E2 1590 aa15.85■□□□□ 0.13
NUP88-201ENST00000225696 PMFBP1Q8TBY8 1022 aa15.85■□□□□ 0.13
NUP88-201ENST00000225696 ARXQ96QS3 562 aa15.85■□□□□ 0.13
NUP88-201ENST00000225696 NPM1P06748 294 aaKnown RBP eCLIP15.85■□□□□ 0.13
NUP88-201ENST00000225696 MYOM2P54296 1465 aa15.84■□□□□ 0.13
NUP88-201ENST00000225696 KANK1Q14678 1352 aa15.84■□□□□ 0.13
NUP88-201ENST00000225696 EIF5BO60841 1220 aaKnown RBP15.84■□□□□ 0.13
NUP88-201ENST00000225696 CHGAP10645 457 aaKnown RBP15.83■□□□□ 0.13
NUP88-201ENST00000225696 MROH2AA6NES4 1674 aa15.83■□□□□ 0.12
NUP88-201ENST00000225696 ARAP3Q8WWN8 1544 aa15.83■□□□□ 0.12
NUP88-201ENST00000225696 NOS1P29475 1434 aa15.83■□□□□ 0.12
NUP88-201ENST00000225696 FAM43AQ8N2R8 423 aa15.83■□□□□ 0.12
NUP88-201ENST00000225696 TSR2Q969E8 191 aaKnown RBP15.83■□□□□ 0.12
NUP88-201ENST00000225696 MROH1Q8NDA8 1641 aa15.82■□□□□ 0.12
NUP88-201ENST00000225696 WDR63Q8IWG1 891 aa15.82■□□□□ 0.12
NUP88-201ENST00000225696 ATP7AQ04656 1500 aa15.82■□□□□ 0.12
NUP88-201ENST00000225696 RRAGDQ9NQL2 400 aaPredicted RBP15.81■□□□□ 0.12
NUP88-201ENST00000225696 RIMBP3CA6NJZ7 1639 aa15.81■□□□□ 0.12
NUP88-201ENST00000225696 RIMBP3BA6NNM3 1639 aa15.81■□□□□ 0.12
NUP88-201ENST00000225696 RIMBP3Q9UFD9 1639 aa15.81■□□□□ 0.12
NUP88-201ENST00000225696 SBNO2Q9Y2G9 1366 aa15.8■□□□□ 0.12
NUP88-201ENST00000225696 SLC24A1O60721 1099 aa15.8■□□□□ 0.12
NUP88-201ENST00000225696 MVPQ14764 893 aaKnown RBP15.8■□□□□ 0.12
NUP88-201ENST00000225696 RWDD1Q9H446 243 aaPredicted RBP15.8■□□□□ 0.12
NUP88-201ENST00000225696 ZNF518AQ6AHZ1 1483 aa15.79■□□□□ 0.12
NUP88-201ENST00000225696 NRXN1Q9ULB1 1477 aa15.79■□□□□ 0.12
NUP88-201ENST00000225696 GZF1Q9H116 711 aaPredicted RBP15.79■□□□□ 0.12
NUP88-201ENST00000225696 UPF2Q9HAU5 1272 aaKnown RBP15.79■□□□□ 0.12
NUP88-201ENST00000225696 IFT172Q9UG01 1749 aa15.79■□□□□ 0.12
NUP88-201ENST00000225696 U2AF1L5P0DN76 240 aaPredicted RBP15.79■□□□□ 0.12
NUP88-201ENST00000225696 U2AF1Q01081 240 aaKnown RBP eCLIP15.79■□□□□ 0.12
NUP88-201ENST00000225696 NUTM2DQ5VT03 806 aaPredicted RBP15.79■□□□□ 0.12
NUP88-201ENST00000225696 MYO3AQ8NEV4 1616 aa15.79■□□□□ 0.12
NUP88-201ENST00000225696 INO80Q9ULG1 1556 aaPredicted RBP15.78■□□□□ 0.12
NUP88-201ENST00000225696 ASXL2Q76L83 1435 aa15.78■□□□□ 0.12
NUP88-201ENST00000225696 KIF1BO60333 1816 aa15.78■□□□□ 0.12
NUP88-201ENST00000225696 MFAP1P55081 439 aaKnown RBP15.77■□□□□ 0.12
NUP88-201ENST00000225696 FANCAO15360 1455 aa15.77■□□□□ 0.12
NUP88-201ENST00000225696 NEURL4Q96JN8 1562 aa15.77■□□□□ 0.11
NUP88-201ENST00000225696 CCDC27Q2M243 656 aa15.77■□□□□ 0.11
NUP88-201ENST00000225696 SENP3Q9H4L4 574 aaPredicted RBP15.77■□□□□ 0.11
NUP88-201ENST00000225696 ABCA9Q8IUA7 1624 aa15.77■□□□□ 0.11
NUP88-201ENST00000225696 CFAP65Q6ZU64 1925 aaKnown RBP15.76■□□□□ 0.11
NUP88-201ENST00000225696 XRCC6P12956 609 aaKnown RBP eCLIP15.76■□□□□ 0.11
NUP88-201ENST00000225696 PANK2Q9BZ23 570 aa15.76■□□□□ 0.11
NUP88-201ENST00000225696 C14orf93Q9H972 538 aaKnown RBP15.76■□□□□ 0.11
NUP88-201ENST00000225696 PPRC1Q5VV67 1664 aaKnown RBP15.76■□□□□ 0.11
NUP88-201ENST00000225696 TRIM27P14373 513 aa15.76■□□□□ 0.11
NUP88-201ENST00000225696 ZKSCAN2Q63HK3 967 aa15.76■□□□□ 0.11
NUP88-201ENST00000225696 FTSJ3Q8IY81 847 aaKnown RBP15.76■□□□□ 0.11
NUP88-201ENST00000225696 DZIP1LQ8IYY4 767 aaKnown RBP15.76■□□□□ 0.11
NUP88-201ENST00000225696 EFCAB6Q5THR3 1501 aa15.75■□□□□ 0.11
NUP88-201ENST00000225696 MCM4P33991 863 aa15.75■□□□□ 0.11
NUP88-201ENST00000225696 EXOSC9Q06265 439 aaKnown RBP15.75■□□□□ 0.11
NUP88-201ENST00000225696 AAMPQ13685 434 aa15.75■□□□□ 0.11
NUP88-201ENST00000225696 C22orf23Q9BZE7 217 aa15.75■□□□□ 0.11
NUP88-201ENST00000225696 MYH16Q9H6N6 1097 aa15.75■□□□□ 0.11
NUP88-201ENST00000225696 SSH1Q8WYL5 1049 aa15.74■□□□□ 0.11
NUP88-201ENST00000225696 QRICH2Q9H0J4 1663 aa15.74■□□□□ 0.11
NUP88-201ENST00000225696 ADGRB1O14514 1584 aa15.74■□□□□ 0.11
NUP88-201ENST00000225696 SAFB2Q14151 953 aaKnown RBP eCLIP15.73■□□□□ 0.11
NUP88-201ENST00000225696 CABP2Q9NPB3 220 aa15.73■□□□□ 0.11
NUP88-201ENST00000225696 SMC4Q9NTJ3 1288 aa15.73■□□□□ 0.11
NUP88-201ENST00000225696 ZMYM3Q14202 1370 aa15.73■□□□□ 0.11
NUP88-201ENST00000225696 ADGRL1O94910 1474 aa15.73■□□□□ 0.11
NUP88-201ENST00000225696 CFAP53Q96M91 514 aa15.73■□□□□ 0.11
NUP88-201ENST00000225696 CD109Q6YHK3 1445 aa15.72■□□□□ 0.11
NUP88-201ENST00000225696 ITPRIPQ8IWB1 547 aa15.72■□□□□ 0.11
NUP88-201ENST00000225696 TRIM35Q9UPQ4 493 aa15.72■□□□□ 0.11
NUP88-201ENST00000225696 ZC3H13Q5T200 1668 aaKnown RBP15.72■□□□□ 0.11
NUP88-201ENST00000225696 FSD2A1L4K1 749 aa15.72■□□□□ 0.11
NUP88-201ENST00000225696 ADGRB3O60242 1522 aa15.71■□□□□ 0.11
NUP88-201ENST00000225696 PLEKHF1Q96S99 279 aa15.71■□□□□ 0.11
NUP88-201ENST00000225696 NOB1Q9ULX3 412 aaKnown RBP15.71■□□□□ 0.11
NUP88-201ENST00000225696 SETBP1Q9Y6X0 1596 aa15.71■□□□□ 0.11
NUP88-201ENST00000225696 U2SURPO15042 1029 aaKnown RBP15.7■□□□□ 0.1
NUP88-201ENST00000225696 L1TD1Q5T7N2 865 aaKnown RBP15.7■□□□□ 0.1
NUP88-201ENST00000225696 RSPH6AQ9H0K4 717 aa15.7■□□□□ 0.1
NUP88-201ENST00000225696 TMPOP42166 694 aaKnown RBP15.69■□□□□ 0.1
NUP88-201ENST00000225696 TMEM57Q8N5G2 664 aa15.69■□□□□ 0.1
NUP88-201ENST00000225696 ZNF692Q9BU19 519 aaPredicted RBP15.69■□□□□ 0.1
NUP88-201ENST00000225696 GGNBP2Q9H3C7 697 aa15.69■□□□□ 0.1
NUP88-201ENST00000225696 NPATQ14207 1427 aa15.69■□□□□ 0.1
NUP88-201ENST00000225696 GOLGA6L3A6NEY3 463 aa15.69■□□□□ 0.1
NUP88-201ENST00000225696 TRAK2O60296 914 aa15.69■□□□□ 0.1
NUP88-201ENST00000225696 HDAC1Q13547 482 aaPredicted RBP15.69■□□□□ 0.1
NUP88-201ENST00000225696 GGT6Q6P531 493 aa15.69■□□□□ 0.1
NUP88-201ENST00000225696 ATF7IPQ6VMQ6 1270 aa15.68■□□□□ 0.1
NUP88-201ENST00000225696 CFAP74Q9C0B2 1584 aa15.68■□□□□ 0.1
NUP88-201ENST00000225696 TULP4Q9NRJ4 1543 aa15.68■□□□□ 0.1
NUP88-201ENST00000225696 CHMP5Q9NZZ3 219 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms