RNA–Protein interactions for RNA: ENST00000218348.7

USP11-201, Transcript of ubiquitin specific peptidase 11, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP11, Length 3,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-201ENST00000218348 TESK2Q96S53 571 aa13.44□□□□□ -0.26
USP11-201ENST00000218348 STAC3Q96MF2 364 aa13.44□□□□□ -0.26
USP11-201ENST00000218348 TMF1P82094 1093 aa13.44□□□□□ -0.26
USP11-201ENST00000218348 PTPRUQ92729 1446 aa13.43□□□□□ -0.26
USP11-201ENST00000218348 TECPR2O15040 1411 aa13.43□□□□□ -0.26
USP11-201ENST00000218348 DLC1Q96QB1 1528 aa13.42□□□□□ -0.26
USP11-201ENST00000218348 SAFB2Q14151 953 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP11-201ENST00000218348 TMEM132EQ6IEE7 984 aa13.42□□□□□ -0.26
USP11-201ENST00000218348 PNISRQ8TF01 805 aaKnown RBP13.41□□□□□ -0.26
USP11-201ENST00000218348 RTN4Q9NQC3 1192 aaKnown RBP13.41□□□□□ -0.26
USP11-201ENST00000218348 TRAK1Q9UPV9 953 aa13.41□□□□□ -0.26
USP11-201ENST00000218348 B4GALNT3Q6L9W6 998 aa13.4□□□□□ -0.26
USP11-201ENST00000218348 C14orf93Q9H972 538 aaKnown RBP13.4□□□□□ -0.26
USP11-201ENST00000218348 THEMISQ8N1K5 641 aaPredicted RBP13.4□□□□□ -0.26
USP11-201ENST00000218348 NPHP4O75161 1426 aaPredicted RBP13.39□□□□□ -0.27
USP11-201ENST00000218348 METP08581 1390 aa13.39□□□□□ -0.27
USP11-201ENST00000218348 ZBED9Q6R2W3 1325 aa13.39□□□□□ -0.27
USP11-201ENST00000218348 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.38□□□□□ -0.27
USP11-201ENST00000218348 ADGRB2O60241 1585 aa13.38□□□□□ -0.27
USP11-201ENST00000218348 KTN1Q86UP2 1357 aaKnown RBP13.38□□□□□ -0.27
USP11-201ENST00000218348 MYBBP1AQ9BQG0 1328 aaKnown RBP13.38□□□□□ -0.27
USP11-201ENST00000218348 TNNT2P45379 298 aaPredicted RBP13.38□□□□□ -0.27
USP11-201ENST00000218348 QRICH2Q9H0J4 1663 aa13.37□□□□□ -0.27
USP11-201ENST00000218348 PER1O15534 1290 aaPredicted RBP13.36□□□□□ -0.27
USP11-201ENST00000218348 NALCNQ8IZF0 1738 aa13.36□□□□□ -0.27
USP11-201ENST00000218348 KNSTRNQ9Y448 316 aa13.36□□□□□ -0.27
USP11-201ENST00000218348 LTBP4Q8N2S1 1624 aa13.36□□□□□ -0.27
USP11-201ENST00000218348 PLPPR3Q6T4P5 718 aa13.36□□□□□ -0.27
USP11-201ENST00000218348 PTCH1Q13635 1447 aa13.35□□□□□ -0.27
USP11-201ENST00000218348 VGFO15240 615 aaPredicted RBP13.35□□□□□ -0.27
USP11-201ENST00000218348 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.35□□□□□ -0.27
USP11-201ENST00000218348 STK26Q9P289 416 aa13.35□□□□□ -0.27
USP11-201ENST00000218348 DEKP35659 375 aaKnown RBP13.35□□□□□ -0.27
USP11-201ENST00000218348 RALBP1Q15311 655 aa13.35□□□□□ -0.27
USP11-201ENST00000218348 PIK3R4Q99570 1358 aa13.34□□□□□ -0.27
USP11-201ENST00000218348 NCKAP5LQ9HCH0 1330 aa13.34□□□□□ -0.27
USP11-201ENST00000218348 HSPA2P54652 639 aa13.34□□□□□ -0.27
USP11-201ENST00000218348 NLRP13Q86W25 1043 aa13.34□□□□□ -0.27
USP11-201ENST00000218348 YTHDC2Q9H6S0 1430 aaKnown RBP13.34□□□□□ -0.27
USP11-201ENST00000218348 CDCA7LQ96GN5 454 aa13.33□□□□□ -0.28
USP11-201ENST00000218348 MYOM1P52179 1685 aa13.33□□□□□ -0.28
USP11-201ENST00000218348 TXNDC2Q86VQ3 553 aa13.33□□□□□ -0.28
USP11-201ENST00000218348 LRPPRCP42704 1394 aaKnown RBP13.32□□□□□ -0.28
USP11-201ENST00000218348 TOPAZ1Q8N9V7 1692 aa13.32□□□□□ -0.28
USP11-201ENST00000218348 TBX22Q9Y458 520 aa13.31□□□□□ -0.28
USP11-201ENST00000218348 USP32Q8NFA0 1604 aa13.31□□□□□ -0.28
USP11-201ENST00000218348 ABCC11Q96J66 1382 aa13.31□□□□□ -0.28
USP11-201ENST00000218348 NKTRP30414 1462 aaKnown RBP13.31□□□□□ -0.28
USP11-201ENST00000218348 ANKLE2Q86XL3 938 aa13.31□□□□□ -0.28
USP11-201ENST00000218348 FAM135BQ49AJ0 1406 aa13.31□□□□□ -0.28
USP11-201ENST00000218348 TULP4Q9NRJ4 1543 aa13.3□□□□□ -0.28
USP11-201ENST00000218348 CCDC146Q8IYE0 955 aa13.29□□□□□ -0.28
USP11-201ENST00000218348 NUDCQ9Y266 331 aa13.29□□□□□ -0.28
USP11-201ENST00000218348 ROBO2Q9HCK4 1378 aa13.29□□□□□ -0.28
USP11-201ENST00000218348 STAG3Q9UJ98 1225 aa13.29□□□□□ -0.28
USP11-201ENST00000218348 SBNO2Q9Y2G9 1366 aa13.28□□□□□ -0.28
USP11-201ENST00000218348 ADAMTS8Q9UP79 889 aa13.28□□□□□ -0.28
USP11-201ENST00000218348 FMN2Q9NZ56 1722 aa13.28□□□□□ -0.28
USP11-201ENST00000218348 SLC12A5Q9H2X9 1139 aa13.27□□□□□ -0.28
USP11-201ENST00000218348 BRD4O60885 1362 aaPredicted RBP13.27□□□□□ -0.29
USP11-201ENST00000218348 SIRT1Q96EB6 747 aa13.26□□□□□ -0.29
USP11-201ENST00000218348 CDC42BPGQ6DT37 1551 aa13.26□□□□□ -0.29
USP11-201ENST00000218348 PLEKHH1Q9ULM0 1364 aa13.26□□□□□ -0.29
USP11-201ENST00000218348 LRRC7Q96NW7 1537 aa13.26□□□□□ -0.29
USP11-201ENST00000218348 PLIN1O60240 522 aa13.26□□□□□ -0.29
USP11-201ENST00000218348 WDR43Q15061 677 aaKnown RBP eCLIP13.26□□□□□ -0.29
USP11-201ENST00000218348 EID1Q9Y6B2 187 aa13.26□□□□□ -0.29
USP11-201ENST00000218348 PPP2R1AP30153 589 aa13.25□□□□□ -0.29
USP11-201ENST00000218348 PARD3Q8TEW0 1356 aa13.25□□□□□ -0.29
USP11-201ENST00000218348 HDGFP51858 240 aaKnown RBP13.24□□□□□ -0.29
USP11-201ENST00000218348 PPP4R2Q9NY27 417 aa13.24□□□□□ -0.29
USP11-201ENST00000218348 A0A0U1RQG5 324 aaPredicted RBP13.24□□□□□ -0.29
USP11-201ENST00000218348 CDCA8Q53HL2 280 aa13.24□□□□□ -0.29
USP11-201ENST00000218348 MSH5O43196 834 aa13.24□□□□□ -0.29
USP11-201ENST00000218348 AMER1Q5JTC6 1135 aaPredicted RBP13.23□□□□□ -0.29
USP11-201ENST00000218348 CARD14Q9BXL6 1004 aa13.23□□□□□ -0.29
USP11-201ENST00000218348 RGPD8O14715 1765 aaPredicted RBP13.23□□□□□ -0.29
USP11-201ENST00000218348 NEUROD2Q15784 382 aa13.23□□□□□ -0.29
USP11-201ENST00000218348 SLC26A8Q96RN1 970 aa13.23□□□□□ -0.29
USP11-201ENST00000218348 CENPJQ9HC77 1338 aaPredicted RBP13.23□□□□□ -0.29
USP11-201ENST00000218348 RBM19Q9Y4C8 960 aaKnown RBP13.23□□□□□ -0.29
USP11-201ENST00000218348 IL27Q8NEV9 243 aa13.22□□□□□ -0.29
USP11-201ENST00000218348 CABP2Q9NPB3 220 aa13.22□□□□□ -0.29
USP11-201ENST00000218348 NCOA3Q9Y6Q9 1424 aa13.22□□□□□ -0.29
USP11-201ENST00000218348 EIF3AQ14152 1382 aaKnown RBP13.21□□□□□ -0.29
USP11-201ENST00000218348 MINK1Q8N4C8 1332 aaPredicted RBP13.2□□□□□ -0.3
USP11-201ENST00000218348 NRKQ7Z2Y5 1582 aa13.2□□□□□ -0.3
USP11-201ENST00000218348 KCNA6P17658 529 aa13.19□□□□□ -0.3
USP11-201ENST00000218348 RCAN3Q9UKA8 241 aa13.19□□□□□ -0.3
USP11-201ENST00000218348 AKAP12Q02952 1782 aa13.19□□□□□ -0.3
USP11-201ENST00000218348 SMG6Q86US8 1419 aaKnown RBP13.19□□□□□ -0.3
USP11-201ENST00000218348 SRPK2P78362 688 aaKnown RBP13.19□□□□□ -0.3
USP11-201ENST00000218348 EXOC6Q8TAG9 804 aa13.18□□□□□ -0.3
USP11-201ENST00000218348 ADGRL3Q9HAR2 1447 aa13.18□□□□□ -0.3
USP11-201ENST00000218348 ATP7BP35670 1465 aa13.18□□□□□ -0.3
USP11-201ENST00000218348 CD163L1Q9NR16 1453 aa13.17□□□□□ -0.3
USP11-201ENST00000218348 AMOTL2Q9Y2J4 779 aa13.17□□□□□ -0.3
USP11-201ENST00000218348 RRP7AQ9Y3A4 280 aaKnown RBP13.17□□□□□ -0.3
USP11-201ENST00000218348 ZNF335Q9H4Z2 1342 aaPredicted RBP13.17□□□□□ -0.3
USP11-201ENST00000218348 ITSN1Q15811 1721 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms