RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 KRCC1Q9NPI7 259 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TCF7L2Q9NQB0 619 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 PFDN2Q9UHV9 154 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 GGA1Q9UJY5 639 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 RNF103O00237 685 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 PDPK1O15530 556 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 SEC24DO94855 1032 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ART4Q93070 314 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 FAXDC2Q96IV6 333 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 SPEF1Q9Y4P9 236 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TRIM49BA6NDI0 452 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 AP5Z1O43299 807 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 EIF3EP60228 445 aaKnown RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TIMM10P62072 90 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 FOLH1Q04609 750 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ST3GAL1Q11201 340 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 MPP3Q13368 585 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 AUHQ13825 339 aaKnown RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF394Q53GI3 561 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 RIPOR1Q6ZS17 1223 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 DEPDC4Q8N2C3 294 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 SGF29Q96ES7 293 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 LRRC19Q9H756 370 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 GLS2Q9UI32 602 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ADGRB2O60241 1585 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 MYO3AQ8NEV4 1616 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 KCNJ2P63252 427 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 LRRC38Q5VT99 294 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 RAB43Q86YS6 212 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CCNYL1Q8N7R7 359 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 PHF21AQ96BD5 680 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 MS4A14Q96JA4 679 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 PURBQ96QR8 312 aaKnown RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 FAM118BQ9BPY3 351 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 KIAA1683Q9H0B3 1180 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 NRBP2Q9NSY0 501 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TRNAU1APQ9NX07 287 aaKnown RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 SLIT1O75093 1534 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ZFYVE16Q7Z3T8 1539 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 USP17L12C9JPN9 530 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 USP17L21D6R901 530 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CCNKO75909 580 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CYP2C8P10632 490 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 WARSP23381 471 aaKnown RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ATP6V1E1P36543 226 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TRAF2Q12933 501 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 PDK2Q15119 407 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TSNQ15631 228 aaKnown RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 FAM47AQ5JRC9 791 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CDCA2Q69YH5 1023 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF280DQ6N043 979 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 C11orf88Q6PI97 169 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CLNKQ7Z7G1 428 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TCF12Q99081 682 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 SMYD2Q9NRG4 433 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 UBP1Q9NZI7 540 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 GPN3Q9UHW5 284 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CDH9Q9ULB4 789 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 B3GNT3Q9Y2A9 372 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 PDE8BO95263 885 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF23P17027 643 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 HNRNPFP52597 415 aaKnown RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 NFX1Q12986 1120 aaKnown RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TCIRG1Q13488 830 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 PDPK2PQ6A1A2 396 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 PACSIN1Q9BY11 444 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 MLXIPLQ9NP71 852 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 AP4B1Q9Y6B7 739 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 GSC2O15499 205 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 HLA-DPA1P20036 260 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CD97P48960 835 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CDK9P50750 372 aaKnown RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ACAP1Q15027 740 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ZNF568Q3ZCX4 644 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ZBED5Q49AG3 693 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TBCELQ5QJ74 424 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 DUPD1Q68J44 220 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 C6orf89Q6UWU4 347 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ZDHHC13Q8IUH4 622 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 EFHBQ8N7U6 833 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 C1orf54Q8WWF1 131 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 CIDECQ96AQ7 238 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ERLEC1Q96DZ1 483 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 KMT5AQ9NQR1 393 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TBC1D22BQ9NU19 505 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 POLIQ9UNA4 740 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 AIM2O14862 343 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TPBGLP0DKB5 382 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 AKAP5P24588 427 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 SDC4P31431 198 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ACLYP53396 1101 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 IST1P53990 364 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 BORAQ6PGQ7 559 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 FAM43BQ6ZT52 329 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 ADHFE1Q8IWW8 467 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TAGAPQ8N103 731 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 PIWIL2Q8TC59 973 aaKnown RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 USP13Q92995 863 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-220ENST00000641603 TBCBQ99426 244 aa4.82□□□□□ -1.64
SCN1A-220ENST00000641603 AGAP1Q9UPQ3 857 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms