RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TEDDM1Q5T9Z0 273 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 ZFP1Q6P2D0 407 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 CYFIP1Q7L576 1253 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 PM20D2Q8IYS1 436 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 NKX2-3Q8TAU0 364 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 PIK3R3Q92569 461 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 TBATAQ96M53 351 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 TM9SF2Q99805 663 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 USP44Q9H0E7 712 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 FOXP1Q9H334 677 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 CDC42EP4Q9H3Q1 356 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 SLCO1B3Q9NPD5 702 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 ANGEL1Q9UNK9 670 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 MRPS7Q9Y2R9 242 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 RTCBQ9Y3I0 505 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 CDK12Q9NYV4 1490 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 HECW2Q9P2P5 1572 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 USP42Q9H9J4 1324 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 CHL1O00533 1208 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 ATMINO43313 823 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 SSX5O60225 188 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 KRT18P05783 430 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 RBP3P10745 1247 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 MYL2P10916 166 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 ITGA4P13612 1032 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 NKX2-5P52952 324 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 PTENP60484 403 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 TYSND1Q2T9J0 566 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 METTL24Q5JXM2 366 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 PXDC1Q5TGL8 231 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 ARHGEF16Q5VV41 709 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 UBE2UQ5VVX9 321 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 CCDC137Q6PK04 289 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 APTXQ7Z2E3 356 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 LURAP1LQ8IV03 231 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 BBS7Q8IWZ6 715 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 C4orf33Q8N1A6 199 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 VANGL1Q8TAA9 524 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 TGFBRAP1Q8WUH2 860 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 TTC17Q96AE7 1141 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 SH3KBP1Q96B97 665 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 PHF21AQ96BD5 680 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 QTRT2Q9H974 415 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 CXorf21Q9HAI6 301 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 EPB41L4AQ9HCS5 686 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 WASH6PQ9NQA3 447 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 BMP2KQ9NSY1 1161 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 POLR3BQ9NW08 1133 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 KIF17Q9P2E2 1029 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 PA2G4Q9UQ80 394 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 GNEQ9Y223 722 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 KLHL20Q9Y2M5 609 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 A8MU76 341 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 MEI4A8MW99 385 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 AP1G1O43747 822 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 CRTAMO95727 393 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 GH1P01241 217 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 PRKCBP05771 671 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 S100A9P06702 114 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 C6orf222P0C671 652 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 RBL1P28749 1068 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 COPAP53621 1224 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 TRAP1Q12931 704 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 HERC3Q15034 1050 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 RTN1Q16799 776 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 USPL1Q5W0Q7 1092 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 BTBD8Q5XKL5 378 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 KCNK18Q7Z418 384 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 HDDC2Q7Z4H3 204 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 GALNT12Q8IXK2 581 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 PQLC1Q8N2U9 271 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 ADCY4Q8NFM4 1077 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 C10orf82Q8WW14 230 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 IP6K1Q92551 441 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 GLG1Q92896 1179 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 SDCCAG3Q96C92 435 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 GIMAP5Q96F15 307 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 TNIP3Q96KP6 325 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 HEMGNQ9BXL5 484 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 TRMT112Q9UI30 125 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 KCNJ14Q9UNX9 436 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 NOSIPQ9Y314 301 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 CPSF1Q10570 1443 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 RFX7Q2KHR2 1363 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 FOXP2O15409 715 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 DENRO43583 198 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 DYRK3O43781 588 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 DEXIO95424 95 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 H6PDO95479 791 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 LIFRP42702 1097 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 KLK7P49862 253 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 TAP1Q03518 808 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 SMARCB1Q12824 385 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 COG2Q14746 738 aa5.94□□□□□ -1.46
SCN1A-216ENST00000637968 ALKBH5Q6P6C2 394 aaKnown RBP5.94□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF354CQ86Y25 554 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms