RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 A0A0A0MRY4 1105 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 TCRBV21S2A2A0A5A6 115 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 CLDN5O00501 218 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 ADAM23O75077 832 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 TACC1O75410 805 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 ENGP17813 658 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 TNNI1P19237 187 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 HOXD13P35453 343 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 TNFRSF4P43489 277 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 MAP7D1Q3KQU3 841 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 DDX42Q86XP3 938 aaKnown RBP eCLIP20.64■□□□□ 0.89
CLN3-262ENST00000637699 NAT16Q8N8M0 369 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 B3GNT5Q9BYG0 378 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 ELOVL4Q9GZR5 314 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 UPF2Q9HAU5 1272 aaKnown RBP20.64■□□□□ 0.89
CLN3-262ENST00000637699 KIAA1586Q9HCI6 787 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 TBC1D14Q9P2M4 693 aa20.64■□□□□ 0.89
CLN3-262ENST00000637699 TBC1D3BA6NDS4 549 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.63■□□□□ 0.89
CLN3-262ENST00000637699 PDCP20941 246 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 ITPKAP23677 461 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 YWHAQP27348 245 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 TNNC1P63316 161 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 BYSLQ13895 437 aaKnown RBP20.63■□□□□ 0.89
CLN3-262ENST00000637699 SNRNP35Q16560 246 aaKnown RBP20.63■□□□□ 0.89
CLN3-262ENST00000637699 WDR72Q3MJ13 1102 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 LYSMD4Q5XG99 296 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 NUP93Q8N1F7 819 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 DEFB119Q8N690 84 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 GATA6Q92908 595 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 CCDC127Q96BQ5 260 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 SLC32A1Q9H598 525 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 FSCN3Q9NQT6 498 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 CHORDC1Q9UHD1 332 aaPredicted RBP20.63■□□□□ 0.89
CLN3-262ENST00000637699 PI4KAP42356 2102 aa20.63■□□□□ 0.89
CLN3-262ENST00000637699 MYO18AQ92614 2054 aaKnown RBP20.63■□□□□ 0.89
CLN3-262ENST00000637699 ZFYVE26Q68DK2 2539 aa20.62■□□□□ 0.89
CLN3-262ENST00000637699 E2F8A0AVK6 867 aa20.62■□□□□ 0.89
CLN3-262ENST00000637699 A8MXQ7 604 aa20.62■□□□□ 0.89
CLN3-262ENST00000637699 COCHO43405 550 aa20.62■□□□□ 0.89
CLN3-262ENST00000637699 CFIP05156 583 aa20.62■□□□□ 0.89
CLN3-262ENST00000637699 GAD2Q05329 585 aa20.62■□□□□ 0.89
CLN3-262ENST00000637699 PHTF2Q8N3S3 785 aa20.62■□□□□ 0.89
CLN3-262ENST00000637699 FBXO32Q969P5 355 aa20.62■□□□□ 0.89
CLN3-262ENST00000637699 USP28Q96RU2 1077 aa20.62■□□□□ 0.89
CLN3-262ENST00000637699 NXF1Q9UBU9 619 aaKnown RBP20.62■□□□□ 0.89
CLN3-262ENST00000637699 PILRBQ9UKJ0 227 aa20.62■□□□□ 0.89
CLN3-262ENST00000637699 CACNA1EQ15878 2313 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 ATRXP46100 2492 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 TMEM8BA6NDV4 472 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 PCNX2A6NKB5 2137 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 CLIC2O15247 247 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 HYAL3O43820 417 aaPredicted RBP20.61■□□□□ 0.89
CLN3-262ENST00000637699 FAM163BP0C2L3 166 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 CYP2J2P51589 502 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 CUL4AQ13619 759 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 SLC39A14Q15043 492 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 SPDYCQ5MJ68 293 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 BTBD8Q5XKL5 378 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 SLC23A3Q6PIS1 610 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 B3GALNT2Q8NCR0 500 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 PDZD8Q8NEN9 1154 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 ZFRQ96KR1 1074 aaKnown RBP20.61■□□□□ 0.89
CLN3-262ENST00000637699 KCNK16Q96T55 309 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 CGRRF1Q99675 332 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 GTPBP2Q9BX10 602 aaKnown RBP20.61■□□□□ 0.89
CLN3-262ENST00000637699 AGPAT3Q9NRZ7 376 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 SH3BP1Q9Y3L3 701 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 TNRC6BQ9UPQ9 1833 aaKnown RBP20.61■□□□□ 0.89
CLN3-262ENST00000637699 WDFY3Q8IZQ1 3526 aa20.61■□□□□ 0.89
CLN3-262ENST00000637699 SPAARA0A1B0GVQ0 90 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 TULP3O75386 442 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 RTN3O95197 1032 aaPredicted RBP20.6■□□□□ 0.89
CLN3-262ENST00000637699 SYT1P21579 422 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 WASP42768 502 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 ATXN3P54252 364 aaPredicted RBP20.6■□□□□ 0.89
CLN3-262ENST00000637699 MYL6P60660 151 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 RPL6Q02878 288 aaKnown RBP20.6■□□□□ 0.89
CLN3-262ENST00000637699 TRPC3Q13507 836 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 PSMD6Q15008 389 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 ANO4Q32M45 955 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 HECTD3Q5T447 861 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 BBS7Q8IWZ6 715 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 ZNF513Q8N8E2 541 aaPredicted RBP20.6■□□□□ 0.89
CLN3-262ENST00000637699 SCAMP5Q8TAC9 235 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 CCSER2Q9H7U1 834 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 DEC1Q9P2X7 70 aa20.6■□□□□ 0.89
CLN3-262ENST00000637699 SRRM3A6NNA2 597 aaPredicted RBP20.59■□□□□ 0.89
CLN3-262ENST00000637699 EIF3DO15371 548 aaKnown RBP eCLIP20.59■□□□□ 0.89
CLN3-262ENST00000637699 TGFB1I1O43294 461 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 AP5Z1O43299 807 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 IRF1P10914 325 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 DPP6P42658 865 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 SIM1P81133 766 aaPredicted RBP20.59■□□□□ 0.89
CLN3-262ENST00000637699 CYP24A1Q07973 514 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 C10orf76Q5T2E6 689 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 TMEM25Q86YD3 366 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 ETFBKMTQ8IXQ9 262 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 ZNF507Q8TCN5 953 aa20.59■□□□□ 0.89
CLN3-262ENST00000637699 ZCCHC14Q8WYQ9 949 aaKnown RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms