RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PATJQ8NI35 1801 aa20.37■□□□□ 0.85
CLN3-260ENST00000637578 BICDL2A1A5D9 508 aa20.36■□□□□ 0.85
CLN3-260ENST00000637578 FAM200BP0CF97 657 aa20.36■□□□□ 0.85
CLN3-260ENST00000637578 TUBP50607 506 aa20.36■□□□□ 0.85
CLN3-260ENST00000637578 STX17P56962 302 aa20.36■□□□□ 0.85
CLN3-260ENST00000637578 MAP3K7CLP57077 242 aa20.36■□□□□ 0.85
CLN3-260ENST00000637578 GAS6Q14393 721 aa20.36■□□□□ 0.85
CLN3-260ENST00000637578 EML3Q32P44 896 aa20.36■□□□□ 0.85
CLN3-260ENST00000637578 DGKKQ5KSL6 1271 aa20.36■□□□□ 0.85
CLN3-260ENST00000637578 SEMA4AQ9H3S1 761 aa20.36■□□□□ 0.85
CLN3-260ENST00000637578 PNPLA8Q9NP80 782 aa20.36■□□□□ 0.85
CLN3-260ENST00000637578 DUS2Q9NX74 493 aaKnown RBP20.36■□□□□ 0.85
CLN3-260ENST00000637578 CHORDC1Q9UHD1 332 aaPredicted RBP20.36■□□□□ 0.85
CLN3-260ENST00000637578 ZFHX2Q9C0A1 2572 aaPredicted RBP20.36■□□□□ 0.85
CLN3-260ENST00000637578 DMDP11532 3685 aa20.36■□□□□ 0.85
CLN3-260ENST00000637578 LEFTY2O00292 366 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 TRDMT1O14717 391 aaKnown RBP20.35■□□□□ 0.85
CLN3-260ENST00000637578 GFRA3O60609 400 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 ADORA2BP29275 332 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 FMO5P49326 533 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 IFRD2Q12894 506 aaPredicted RBP20.35■□□□□ 0.85
CLN3-260ENST00000637578 LRRC32Q14392 662 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 PON2Q15165 354 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 TMEM196Q5HYL7 178 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 ASCL5Q7RTU5 278 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 SLC4A11Q8NBS3 891 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 NKD2Q969F2 451 aaPredicted RBP20.35■□□□□ 0.85
CLN3-260ENST00000637578 DNAI2Q9GZS0 605 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 FBXO44Q9H4M3 255 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 ECT2Q9H8V3 914 aa20.35■□□□□ 0.85
CLN3-260ENST00000637578 PRR23AA6NEV1 266 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 ABL1P00519 1130 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 TDGF1P13385 188 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 RAD23BP54727 409 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 MARSP56192 900 aaKnown RBP20.34■□□□□ 0.85
CLN3-260ENST00000637578 PPP1R26Q5T8A7 1209 aaPredicted RBP20.34■□□□□ 0.85
CLN3-260ENST00000637578 SYNPOQ8N3V7 929 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 ATP2A3Q93084 1043 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 TMEM176AQ96HP8 235 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 MED15Q96RN5 788 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 DUSP16Q9BY84 665 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 LINC00597Q9H2U6 94 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 RBM12Q9NTZ6 932 aaKnown RBP20.34■□□□□ 0.85
CLN3-260ENST00000637578 CPQQ9Y646 472 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 WNT6Q9Y6F9 365 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 COCHO43405 550 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 GJA4P35212 333 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 AMPD2Q01433 879 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 CSTF1Q05048 431 aaKnown RBP20.34■□□□□ 0.85
CLN3-260ENST00000637578 STX1AQ16623 288 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 ZNF394Q53GI3 561 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 HECTD3Q5T447 861 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 GPRIN1Q7Z2K8 1008 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 SPEM1Q8N4L4 309 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 CPA6Q8N4T0 437 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 HEXIM2Q96MH2 286 aaKnown RBP20.34■□□□□ 0.85
CLN3-260ENST00000637578 GMIPQ9P107 970 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 DACH1Q9UI36 760 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 RWDD2AQ9UIY3 292 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 SCML2Q9UQR0 700 aa20.34■□□□□ 0.85
CLN3-260ENST00000637578 SYCE3A1L190 88 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 IFNAR2P48551 515 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 PGFP49763 221 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 TYRO3Q06418 890 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 CUL2Q13617 745 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 CCDC40Q4G0X9 1142 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 ARHGAP17Q68EM7 881 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 ZC3H14Q6PJT7 736 aaKnown RBP20.33■□□□□ 0.84
CLN3-260ENST00000637578 TRIM59Q8IWR1 403 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 UBR7Q8N806 425 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 ZBTB44Q8NCP5 570 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 LMO3Q8TAP4 145 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 ZFRQ96KR1 1074 aaKnown RBP20.33■□□□□ 0.84
CLN3-260ENST00000637578 ANO10Q9NW15 660 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 R4GN57 208 aa20.33■□□□□ 0.84
CLN3-260ENST00000637578 FANCMQ8IYD8 2048 aa20.32■□□□□ 0.84
CLN3-260ENST00000637578 P4HA2O15460 535 aa20.32■□□□□ 0.84
CLN3-260ENST00000637578 LETM1O95202 739 aaPredicted RBP20.32■□□□□ 0.84
CLN3-260ENST00000637578 PAPSS2O95340 614 aaPredicted RBP20.32■□□□□ 0.84
CLN3-260ENST00000637578 GNA14O95837 355 aa20.32■□□□□ 0.84
CLN3-260ENST00000637578 CCR3P51677 355 aa20.32■□□□□ 0.84
CLN3-260ENST00000637578 KIF11P52732 1056 aa20.32■□□□□ 0.84
CLN3-260ENST00000637578 FSTL4Q6MZW2 842 aa20.32■□□□□ 0.84
CLN3-260ENST00000637578 C11orf57Q6ZUT1 292 aaPredicted RBP20.32■□□□□ 0.84
CLN3-260ENST00000637578 DDX42Q86XP3 938 aaKnown RBP eCLIP20.32■□□□□ 0.84
CLN3-260ENST00000637578 ADGRG2Q8IZP9 1017 aa20.32■□□□□ 0.84
CLN3-260ENST00000637578 FAM126AQ9BYI3 521 aaPredicted RBP20.32■□□□□ 0.84
CLN3-260ENST00000637578 UBXN6Q9BZV1 441 aa20.32■□□□□ 0.84
CLN3-260ENST00000637578 CCSER2Q9H7U1 834 aa20.32■□□□□ 0.84
CLN3-260ENST00000637578 ZSCAN32Q9NX65 697 aa20.32■□□□□ 0.84
CLN3-260ENST00000637578 PCDHGA2Q9Y5H1 932 aa20.32■□□□□ 0.84
CLN3-260ENST00000637578 HELZP42694 1942 aaKnown RBP20.32■□□□□ 0.84
CLN3-260ENST00000637578 MBL2P11226 248 aaPredicted RBP20.31■□□□□ 0.84
CLN3-260ENST00000637578 ERCC5P28715 1186 aaPredicted RBP20.31■□□□□ 0.84
CLN3-260ENST00000637578 GALK1P51570 392 aa20.31■□□□□ 0.84
CLN3-260ENST00000637578 ZSCAN23Q3MJ62 389 aa20.31■□□□□ 0.84
CLN3-260ENST00000637578 Q6ZS52 159 aa20.31■□□□□ 0.84
CLN3-260ENST00000637578 SRRTQ9BXP5 876 aaKnown RBP20.31■□□□□ 0.84
CLN3-260ENST00000637578 FBRSL1Q9HCM7 1045 aaKnown RBP20.31■□□□□ 0.84
CLN3-260ENST00000637578 TLR8Q9NR97 1041 aaKnown RBP20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms