RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 IBSPP21815 317 aaPredicted RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 NOS2P35228 1153 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 ALDH7A1P49419 539 aaKnown RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 ZNF135P52742 658 aaPredicted RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 DAOAP59103 153 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 YWHAZP63104 245 aaKnown RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 ADCY1Q08828 1119 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 ZNF211Q13398 564 aaPredicted RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 PPIGQ13427 754 aaKnown RBP eCLIP11.07□□□□□ -0.64
CLN3-248ENST00000636355 CUL1Q13616 776 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 PDK2Q15119 407 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 SLC25A52Q3SY17 297 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 PAN2Q504Q3 1202 aaKnown RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 BOLA3Q53S33 107 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 PM20D1Q6GTS8 502 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 FBXO38Q6PIJ6 1188 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 BNIPLQ7Z465 357 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 DEFB128Q7Z7B8 93 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 SPATA2LQ8IUW3 424 aaPredicted RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 CCDC50Q8IVM0 306 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 MAP7D3Q8IWC1 876 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 IFT20Q8IY31 132 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 EMC1Q8N766 993 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 TTC13Q8NBP0 860 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 CMASQ8NFW8 434 aaPredicted RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 SPPL2BQ8TCT7 592 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 RXFP2Q8WXD0 754 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 SEC14L1Q92503 715 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 NT5C3BQ969T7 300 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 ZNF689Q96CS4 500 aaPredicted RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 VWCEQ96DN2 955 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 PGAP3Q96FM1 320 aaPredicted RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 PIWIL1Q96J94 861 aaKnown RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 SLC9A7Q96T83 725 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 SMOQ99835 787 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 RHOXF2Q9BQY4 288 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 PARD6BQ9BYG5 372 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 OSBPL8Q9BZF1 889 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 POPDC2Q9HBU9 364 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 ARFGAP3Q9NP61 516 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 IL23AQ9NPF7 189 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 COMMD8Q9NX08 183 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.07□□□□□ -0.64
CLN3-248ENST00000636355 SMARCAL1Q9NZC9 954 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 EHD2Q9NZN4 543 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 RCOR3Q9P2K3 495 aaPredicted RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 HSFX1Q9UBD0 423 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 USP18Q9UMW8 372 aa11.07□□□□□ -0.64
CLN3-248ENST00000636355 TIMM13Q9Y5L4 95 aaPredicted RBP11.07□□□□□ -0.64
CLN3-248ENST00000636355 hCG_1818297A0A087WSY0 165 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 LRRD1A4D1F6 860 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 BHMG1C9JSJ3 638 aaPredicted RBP11.06□□□□□ -0.64
CLN3-248ENST00000636355 I3L4J1 428 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 NDC80O14777 642 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 ZNF189O75820 626 aaPredicted RBP11.06□□□□□ -0.64
CLN3-248ENST00000636355 ENDOD1O94919 500 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 GJB6O95452 261 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 ZBED1O96006 694 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 MIPP30301 263 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 CDKN2BP42772 138 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 SSR1P43307 286 aaKnown RBP11.06□□□□□ -0.64
CLN3-248ENST00000636355 TKTL1P51854 596 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 BCAR1P56945 870 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 MAP3K7CLP57077 242 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 WDR5P61964 334 aaKnown RBP11.06□□□□□ -0.64
CLN3-248ENST00000636355 CREMQ03060 361 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 LMNB2Q03252 620 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 NNTQ13423 1086 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 NAA30Q147X3 362 aaPredicted RBP11.06□□□□□ -0.64
CLN3-248ENST00000636355 SIX1Q15475 284 aaPredicted RBP11.06□□□□□ -0.64
CLN3-248ENST00000636355 CCDC14Q49A88 953 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 FAM171A1Q5VUB5 890 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 TRNP1Q6NT89 227 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 PSRC1Q6PGN9 363 aaPredicted RBP11.06□□□□□ -0.64
CLN3-248ENST00000636355 TMCO3Q6UWJ1 677 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 SPOCD1Q6ZMY3 1216 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 PHLDB2Q86SQ0 1253 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 SCUBE3Q8IX30 993 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 PRELID2Q8N945 189 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 ZMIZ2Q8NF64 920 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 FAM71BQ8TC56 605 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 PIK3R5Q8WYR1 880 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 TSC1Q92574 1164 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 KHSRPQ92945 711 aaKnown RBP eCLIP11.06□□□□□ -0.64
CLN3-248ENST00000636355 C8orf48Q96LL4 319 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 ZNF558Q96NG5 402 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 PNKPQ96T60 521 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 KRT12Q99456 494 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 ZNF670Q9BS34 389 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 TTPALQ9BTX7 342 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 PRKAG2Q9UGJ0 569 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 USTQ9Y2C2 406 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 PCDHB5Q9Y5E4 795 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 BACE2Q9Y5Z0 518 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 USP3Q9Y6I4 520 aa11.06□□□□□ -0.64
CLN3-248ENST00000636355 FAM170AA1A519 330 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 TRIM43BA6NCK2 446 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 C3orf70A6NLC5 250 aaPredicted RBP11.05□□□□□ -0.64
CLN3-248ENST00000636355 F8W810 466 aa11.05□□□□□ -0.64
CLN3-248ENST00000636355 CLDN5O00501 218 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms